prot_H-paniculata_contig82598.16279.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig82598.16279.1
Unique Nameprot_H-paniculata_contig82598.16279.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length56
Homology
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A438JWQ6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JWQ6_VITVI)

HSP 1 Score: 53.5 bits (127), Expect = 7.850e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    3 LPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            L ++E W  AM  EMSS + N V+DLV   E+P G KSIG +WV+K+K D+
Sbjct:  170 LQESELWYNAMKDEMSSMRCNNVWDLV---ELPNGAKSIGCKWVFKIKKDS 217          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A1X7U495_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U495_AMPQE)

HSP 1 Score: 53.1 bits (126), Expect = 1.090e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    1 MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKS 51
            M   + EKW  AM +EM S ++N+V++LV   E+P G K IG +WVYKVK+
Sbjct:  829 MTSNEREKWSEAMEREMKSIESNKVWELV---ELPEGKKPIGCKWVYKVKT 876          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A3L6T4V2_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6T4V2_PANMI)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-6
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0
Query:    6 AEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            + KW  AM  EM S +TNRV+DL    EIP G K++G +W+YK K D+
Sbjct:  870 SSKWFEAMEDEMKSMRTNRVWDL---EEIPEGAKTVGCKWIYKTKCDS 914          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A3L6SZH4_PANMI (Integrase catalytic domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SZH4_PANMI)

HSP 1 Score: 51.6 bits (122), Expect = 3.800e-6
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0
Query:    6 AEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            + KW  AM  E+ S +TNRV+DL    EIP G K++G +WVYK K D+
Sbjct:  269 SSKWFEAMEDEIKSMRTNRVWDL---KEIPEGAKTVGCKWVYKTKCDS 313          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI0016610B54 (hypothetical protein n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0016610B54)

HSP 1 Score: 50.1 bits (118), Expect = 4.230e-6
Identity = 23/53 (43.40%), Postives = 32/53 (60.38%), Query Frame = 0
Query:    1 MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            M    + KW  AM  EM S  TN+V+DL +   IP G K++G +W+YK K D+
Sbjct:   12 MRSDHSSKWLKAMEDEMKSMSTNKVWDLEI---IPKGAKTVGCKWIYKTKYDS 61          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI000E21B5FB (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Glycine max TaxID=3847 RepID=UPI000E21B5FB)

HSP 1 Score: 49.7 bits (117), Expect = 4.240e-6
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    1 MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            M+  ++  W  AM  E+ S  +N+V+DLV   E+PAG+K IG RWV+K K D+
Sbjct:    1 MSSKESNLWYNAMRDEIDSMASNQVWDLV---ELPAGVKVIGCRWVFKTKKDS 50          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A3L6R887_PANMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6R887_PANMI)

HSP 1 Score: 51.2 bits (121), Expect = 5.120e-6
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 0
Query:    8 KWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            KW  AM  EM S ++NRV+DL    EIP G K++G +WVYK K D+
Sbjct:  253 KWFEAMEDEMKSMRSNRVWDL---EEIPEGAKTVGCKWVYKTKCDS 295          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A445M227_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M227_GLYSO)

HSP 1 Score: 50.8 bits (120), Expect = 7.170e-6
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    1 MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            M+  ++  W  AM  EMSS Q+N+V++LV   E+P G K+IG +WV+K K+D+
Sbjct: 1095 MSCKESNLWYDAMKDEMSSMQSNKVWNLV---ELPNGAKAIGCKWVFKTKNDS 1144          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: B5U9F7_SOYBN (Gag-protease-integrase-RT-RNaseH polyprotein n=1 Tax=Glycine max TaxID=3847 RepID=B5U9F7_SOYBN)

HSP 1 Score: 50.4 bits (119), Expect = 9.800e-6
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    1 MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 53
            M+  ++  W  AM  EMSS Q+N+V++LV   E+P G K+IG +WV+K K D+
Sbjct:  807 MSCKESNLWYDAMKDEMSSMQSNKVWNLV---ELPNGAKAIGCKWVFKTKKDS 856          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A453NGN6_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NGN6_AEGTS)

HSP 1 Score: 50.1 bits (118), Expect = 1.340e-5
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 0
Query:    7 EKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSD 52
            E W+ AM++E+ S + N+V++L    ++P G K+IGL+WVYKVK D
Sbjct:  724 EYWRRAMDEELGSIRDNKVWELA---DLPNGHKTIGLKWVYKVKKD 766          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438JWQ6_VITVI7.850e-750.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7U495_AMPQE1.090e-649.02Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A3L6T4V2_PANMI1.490e-650.00Uncharacterized protein n=1 Tax=Panicum miliaceum ... [more]
A0A3L6SZH4_PANMI3.800e-650.00Integrase catalytic domain-containing protein n=1 ... [more]
UPI0016610B544.230e-643.40hypothetical protein n=1 Tax=Serratia marcescens T... [more]
UPI000E21B5FB4.240e-645.28uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A3L6R887_PANMI5.120e-652.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A445M227_GLYSO7.170e-645.28Retrovirus-related Pol polyprotein from transposon... [more]
B5U9F7_SOYBN9.800e-645.28Gag-protease-integrase-RT-RNaseH polyprotein n=1 T... [more]
A0A453NGN6_AEGTS1.340e-547.83Uncharacterized protein n=3 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82598contigH-paniculata_contig82598:63..230 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82598.16279.1mRNA_H-paniculata_contig82598.16279.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig82598 63..251 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig82598.16279.1 ID=prot_H-paniculata_contig82598.16279.1|Name=mRNA_H-paniculata_contig82598.16279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVK
SDNTS*
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