mRNA_H-paniculata_contig82598.16279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A151T5R0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R0_CAJCA) HSP 1 Score: 60.1 bits (144), Expect = 5.200e-9 Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKS 174
P+TYKEA++ P+AEKW LAM +EM S N+ + LV E+P G +G +W+YK KS
Sbjct: 437 PTTYKEAISHPEAEKWILAMREEMESLYKNQTWKLV---ELPKGRHVVGCKWIYKKKS 491
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI0016610B54 (hypothetical protein n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0016610B54) HSP 1 Score: 57.0 bits (136), Expect = 1.180e-8 Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
P++++EAM + KW AM EM S TN+V+DL + IP G K++G +W+YK K D+
Sbjct: 5 PTSFEEAMRSDHSSKWLKAMEDEMKSMSTNKVWDLEI---IPKGAKTVGCKWIYKTKYDS 61
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: B5RTR8_DEBHA (DEHA2D06061p n=4 Tax=Debaryomyces hansenii TaxID=4959 RepID=B5RTR8_DEBHA) HSP 1 Score: 58.9 bits (141), Expect = 1.350e-8 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSD 177
P TYK+AM+ +AEKWK+AM+ EMS+ +N +DLV +P K+IG RWV+ K D
Sbjct: 992 PVTYKQAMSSDEAEKWKIAMDSEMSAHYSNNTWDLV---SLPKDRKAIGNRWVFTKKDD 1047
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI0018A7FDA1 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Lucilia sericata TaxID=13632 RepID=UPI0018A7FDA1) HSP 1 Score: 57.8 bits (138), Expect = 1.580e-8 Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVK 171
PSTYK+A+ + EKW AMN+EM S + N+ + +V +P G K+IG +W+YK+K
Sbjct: 107 PSTYKQAIECNEKEKWVEAMNEEMKSLENNKTWKVV---PLPEGRKAIGCKWIYKIK 160
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A3L6T4V2_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6T4V2_PANMI) HSP 1 Score: 58.5 bits (140), Expect = 1.840e-8 Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
P +++EAM + KW AM EM S +TNRV+DL EIP G K++G +W+YK K D+
Sbjct: 858 PISFEEAMRSRHSSKWFEAMEDEMKSMRTNRVWDL---EEIPEGAKTVGCKWIYKTKCDS 914
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI00138F77A0 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00138F77A0) HSP 1 Score: 58.2 bits (139), Expect = 2.500e-8 Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDNT 183
P+TY+EA+ P ++KW+ AM EM S N+V++LV + P G K I +W++K+K+D+T
Sbjct: 194 PATYREAIESPNSDKWRQAMESEMQSMYDNQVWNLV---DAPQGAKVIECKWIFKLKADDT 251
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A3L6SZH4_PANMI (Integrase catalytic domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SZH4_PANMI) HSP 1 Score: 57.4 bits (137), Expect = 4.680e-8 Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
P +++EAM + KW AM E+ S +TNRV+DL EIP G K++G +WVYK K D+
Sbjct: 257 PISFEEAMRSRHSSKWFEAMEDEIKSMRTNRVWDL---KEIPEGAKTVGCKWVYKTKCDS 313
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A1X7U495_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U495_AMPQE) HSP 1 Score: 57.4 bits (137), Expect = 4.700e-8 Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKS 174
P + EAM + EKW AM +EM S ++N+V++LV E+P G K IG +WVYKVK+
Sbjct: 822 PQSVTEAMTSNEREKWSEAMEREMKSIESNKVWELV---ELPEGKKPIGCKWVYKVKT 876
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: M8B5V9_AEGTA (RNA helicase n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8B5V9_AEGTA) HSP 1 Score: 57.4 bits (137), Expect = 4.730e-8 Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
P++Y+EAM P + KW AM EM S + V+DL EIP G K++G +WVYK+K ++
Sbjct: 956 PTSYEEAMRSPHSLKWMRAMEDEMKSMSSKDVWDL---EEIPKGAKTVGCKWVYKIKYES 1012
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A445M227_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M227_GLYSO) HSP 1 Score: 57.0 bits (136), Expect = 6.460e-8 Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
P T+ +AM+ ++ W AM EMSS Q+N+V++LV E+P G K+IG +WV+K K+D+
Sbjct: 1088 PETFDQAMSCKESNLWYDAMKDEMSSMQSNKVWNLV---ELPNGAKAIGCKWVFKTKNDS 1144 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig82598.16279.1 >prot_H-paniculata_contig82598.16279.1 ID=prot_H-paniculata_contig82598.16279.1|Name=mRNA_H-paniculata_contig82598.16279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKback to top mRNA from alignment at H-paniculata_contig82598:63..251- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig82598.16279.1 ID=mRNA_H-paniculata_contig82598.16279.1|Name=mRNA_H-paniculata_contig82598.16279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig82598:63..251- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig82598:63..251- >mRNA_H-paniculata_contig82598.16279.1 ID=mRNA_H-paniculata_contig82598.16279.1|Name=mRNA_H-paniculata_contig82598.16279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig82598:63..251- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |