mRNA_H-paniculata_contig82598.16279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82598.16279.1
Unique NamemRNA_H-paniculata_contig82598.16279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A151T5R0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R0_CAJCA)

HSP 1 Score: 60.1 bits (144), Expect = 5.200e-9
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKS 174
            P+TYKEA++ P+AEKW LAM +EM S   N+ + LV   E+P G   +G +W+YK KS
Sbjct:  437 PTTYKEAISHPEAEKWILAMREEMESLYKNQTWKLV---ELPKGRHVVGCKWIYKKKS 491          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI0016610B54 (hypothetical protein n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0016610B54)

HSP 1 Score: 57.0 bits (136), Expect = 1.180e-8
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
            P++++EAM    + KW  AM  EM S  TN+V+DL +   IP G K++G +W+YK K D+
Sbjct:    5 PTSFEEAMRSDHSSKWLKAMEDEMKSMSTNKVWDLEI---IPKGAKTVGCKWIYKTKYDS 61          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: B5RTR8_DEBHA (DEHA2D06061p n=4 Tax=Debaryomyces hansenii TaxID=4959 RepID=B5RTR8_DEBHA)

HSP 1 Score: 58.9 bits (141), Expect = 1.350e-8
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSD 177
            P TYK+AM+  +AEKWK+AM+ EMS+  +N  +DLV    +P   K+IG RWV+  K D
Sbjct:  992 PVTYKQAMSSDEAEKWKIAMDSEMSAHYSNNTWDLV---SLPKDRKAIGNRWVFTKKDD 1047          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI0018A7FDA1 (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Lucilia sericata TaxID=13632 RepID=UPI0018A7FDA1)

HSP 1 Score: 57.8 bits (138), Expect = 1.580e-8
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVK 171
            PSTYK+A+   + EKW  AMN+EM S + N+ + +V    +P G K+IG +W+YK+K
Sbjct:  107 PSTYKQAIECNEKEKWVEAMNEEMKSLENNKTWKVV---PLPEGRKAIGCKWIYKIK 160          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A3L6T4V2_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6T4V2_PANMI)

HSP 1 Score: 58.5 bits (140), Expect = 1.840e-8
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
            P +++EAM    + KW  AM  EM S +TNRV+DL    EIP G K++G +W+YK K D+
Sbjct:  858 PISFEEAMRSRHSSKWFEAMEDEMKSMRTNRVWDL---EEIPEGAKTVGCKWIYKTKCDS 914          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: UPI00138F77A0 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00138F77A0)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-8
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDNT 183
            P+TY+EA+  P ++KW+ AM  EM S   N+V++LV   + P G K I  +W++K+K+D+T
Sbjct:  194 PATYREAIESPNSDKWRQAMESEMQSMYDNQVWNLV---DAPQGAKVIECKWIFKLKADDT 251          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A3L6SZH4_PANMI (Integrase catalytic domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6SZH4_PANMI)

HSP 1 Score: 57.4 bits (137), Expect = 4.680e-8
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
            P +++EAM    + KW  AM  E+ S +TNRV+DL    EIP G K++G +WVYK K D+
Sbjct:  257 PISFEEAMRSRHSSKWFEAMEDEIKSMRTNRVWDL---KEIPEGAKTVGCKWVYKTKCDS 313          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A1X7U495_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U495_AMPQE)

HSP 1 Score: 57.4 bits (137), Expect = 4.700e-8
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKS 174
            P +  EAM   + EKW  AM +EM S ++N+V++LV   E+P G K IG +WVYKVK+
Sbjct:  822 PQSVTEAMTSNEREKWSEAMEREMKSIESNKVWELV---ELPEGKKPIGCKWVYKVKT 876          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: M8B5V9_AEGTA (RNA helicase n=1 Tax=Aegilops tauschii TaxID=37682 RepID=M8B5V9_AEGTA)

HSP 1 Score: 57.4 bits (137), Expect = 4.730e-8
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
            P++Y+EAM  P + KW  AM  EM S  +  V+DL    EIP G K++G +WVYK+K ++
Sbjct:  956 PTSYEEAMRSPHSLKWMRAMEDEMKSMSSKDVWDL---EEIPKGAKTVGCKWVYKIKYES 1012          
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Match: A0A445M227_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M227_GLYSO)

HSP 1 Score: 57.0 bits (136), Expect = 6.460e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 PSTYKEAMNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVKSDN 180
            P T+ +AM+  ++  W  AM  EMSS Q+N+V++LV   E+P G K+IG +WV+K K+D+
Sbjct: 1088 PETFDQAMSCKESNLWYDAMKDEMSSMQSNKVWNLV---ELPNGAKAIGCKWVFKTKNDS 1144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82598.16279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T5R0_CAJCA5.200e-950.00Retrovirus-related Pol polyprotein from transposon... [more]
UPI0016610B541.180e-843.33hypothetical protein n=1 Tax=Serratia marcescens T... [more]
B5RTR8_DEBHA1.350e-849.15DEHA2D06061p n=4 Tax=Debaryomyces hansenii TaxID=4... [more]
UPI0018A7FDA11.580e-845.61uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A3L6T4V2_PANMI1.840e-846.67Uncharacterized protein n=1 Tax=Panicum miliaceum ... [more]
UPI00138F77A02.500e-842.62Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A3L6SZH4_PANMI4.680e-846.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A1X7U495_AMPQE4.700e-848.28Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
M8B5V9_AEGTA4.730e-845.00RNA helicase n=1 Tax=Aegilops tauschii TaxID=37682... [more]
A0A445M227_GLYSO6.460e-845.00Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82598contigH-paniculata_contig82598:63..251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size189
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7638075-CDS-H-paniculata_contig82598:62..2301622931036.7638075-CDS-H-paniculata_contig82598:62..230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82598 63..230 -
1691481560.8350692-CDS-H-paniculata_contig82598:62..2301691481560.8350692-CDS-H-paniculata_contig82598:62..230Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82598 63..230 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7843938-UTR-H-paniculata_contig82598:230..2511622931036.7843938-UTR-H-paniculata_contig82598:230..251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82598 231..251 -
1691481560.8444312-UTR-H-paniculata_contig82598:230..2511691481560.8444312-UTR-H-paniculata_contig82598:230..251Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig82598 231..251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82598.16279.1prot_H-paniculata_contig82598.16279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82598 63..230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82598.16279.1

>prot_H-paniculata_contig82598.16279.1 ID=prot_H-paniculata_contig82598.16279.1|Name=mRNA_H-paniculata_contig82598.16279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MNLPQAEKWKLAMNKEMSSFQTNRVYDLVLQNEIPAGLKSIGLRWVYKVK
SDNTS*
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mRNA from alignment at H-paniculata_contig82598:63..251-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82598.16279.1 ID=mRNA_H-paniculata_contig82598.16279.1|Name=mRNA_H-paniculata_contig82598.16279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig82598:63..251- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTCAACCTATAAGGAGGCAATGAATCTTCCTCAAGCTGAGAAGTGGAA GCTAGCGATGAACAAGGAGATGTCAAGCTTCCAAACCAACAGGGTATACG ACCTAGTTCTCCAAAACGAAATACCGGCAGGCCTGAAGAGCATCGGATTA CGATGGGTATACAAAGTCAAGTCTGACAACACATCCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig82598:63..251-

>mRNA_H-paniculata_contig82598.16279.1 ID=mRNA_H-paniculata_contig82598.16279.1|Name=mRNA_H-paniculata_contig82598.16279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig82598:63..251- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATCTTCCTCAAGCTGAGAAGTGGAAGCTAGCGATGAACAAGGAGAT
GTCAAGCTTCCAAACCAACAGGGTATACGACCTAGTTCTCCAAAACGAAA
TACCGGCAGGCCTGAAGAGCATCGGATTACGATGGGTATACAAAGTCAAG
TCTGACAACACATCCTAAATGAATCTTCCTCAAGCTGAGAAGTGGAAGCT
AGCGATGAACAAGGAGATGTCAAGCTTCCAAACCAACAGGGTATACGACC
TAGTTCTCCAAAACGAAATACCGGCAGGCCTGAAGAGCATCGGATTACGA
TGGGTATACAAAGTCAAGTCTGACAACACATCCTAA
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