prot_H-paniculata_contig82585.16278.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig82585.16278.1
Unique Nameprot_H-paniculata_contig82585.16278.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length77
Homology
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: C5DHN3_LACTC (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Lachancea TaxID=300275 RepID=C5DHN3_LACTC)

HSP 1 Score: 100 bits (249), Expect = 3.200e-24
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 0
Query:    7 NNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA---------SASRFRLSSLRNSIWL 68
            N +S++DRKKLDG+YECILCACCSTSCPSYWWN ++YLGPAVLMQA          AS+FR   L+NS+ L
Sbjct:  160 NLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDEASKFRKEMLQNSMSL 230          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A815T628_9BILA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815T628_9BILA)

HSP 1 Score: 99.8 bits (247), Expect = 4.610e-24
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    4 ALGNNK---SVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 52
            A+GN +   SV+DRKK+DGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA
Sbjct:  175 AVGNKQLFQSVEDRKKMDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 226          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A6H5GUQ3_9HEMI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GUQ3_9HEMI)

HSP 1 Score: 99.8 bits (247), Expect = 8.220e-24
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 52
            PA    N +SV+DRKKLDG+YECILCACCSTSCPSYWWN DKYLGPAVLMQA
Sbjct:  157 PAGTKQNLQSVEDRKKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 208          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: C4Y771_CLAL4 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=9 Tax=Metschnikowiaceae TaxID=27319 RepID=C4Y771_CLAL4)

HSP 1 Score: 99.4 bits (246), Expect = 8.250e-24
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 0
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA---------SASRFRLSSLRNSIWL 68
            PA    N +S++DR KLDG+YECILCACCSTSCPSYWWN  +YLGPAVLMQA          AS+FR   L+NS+ L
Sbjct:  150 PADGRENLQSIEDRAKLDGLYECILCACCSTSCPSYWWNQQQYLGPAVLMQAYRWLIDSRDQASKFRKEMLQNSMSL 226          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A813BXY5_9DINO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BXY5_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 8.670e-24
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    7 NNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 52
            N +S++DRKKLDGMYECILCACCSTSCPSYWWN D+YLGPAVLMQA
Sbjct:   78 NLQSIEDRKKLDGMYECILCACCSTSCPSYWWNGDRYLGPAVLMQA 123          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A0K8SDS3_LYGHE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SDS3_LYGHE)

HSP 1 Score: 99.8 bits (247), Expect = 1.020e-23
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 52
            PA    N +SV+DRKKLDG+YECILCACCSTSCPSYWWN DKYLGPAVLMQA
Sbjct:  169 PAGTKQNLQSVEDRKKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 220          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A4P9WE09_9FUNG (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WE09_9FUNG)

HSP 1 Score: 99.4 bits (246), Expect = 1.220e-23
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 0
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 52
            PA    N +S+ DRKKLDG+YECILCACCSTSCPSYWWNSDKYLGPAVLMQA
Sbjct:  170 PAPERENLQSIADRKKLDGLYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 221          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: UPI0011442DCF (succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like n=1 Tax=Formica exsecta TaxID=72781 RepID=UPI0011442DCF)

HSP 1 Score: 98.2 bits (243), Expect = 1.220e-23
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0
Query:    2 ARALGNNK---SVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQAS 53
            A+ +GN +   SV+DRKKLDG+YECILCACCSTSCPSYWWN DKYLGPAVLMQ S
Sbjct:  154 AKKVGNQQYLQSVEDRKKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQVS 208          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A819ZWV3_9BILA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A819ZWV3_9BILA)

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-23
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0
Query:    9 KSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 52
            +SV+DRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA
Sbjct:  179 QSVEDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 222          
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.710e-23
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 0
Query:    9 KSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 52
            +S+QDRKKLDGMYECILCACCSTSCPSYWWN+DKYLGPAVLMQA
Sbjct:  179 QSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C5DHN3_LACTC3.200e-2464.79Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A815T628_9BILA4.610e-2484.62Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6H5GUQ3_9HEMI8.220e-2482.69Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
C4Y771_CLAL48.250e-2461.04Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A813BXY5_9DINO8.670e-2486.96Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A0K8SDS3_LYGHE1.020e-2382.69Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A4P9WE09_9FUNG1.220e-2382.69Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
UPI0011442DCF1.220e-2378.18succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A819ZWV3_9BILA1.600e-2395.45Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
D7FWF5_ECTSI1.710e-2393.18Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009051Alpha-helical ferredoxinGENE3D1.10.1060.10coord: 3..65
e-value: 3.1E-22
score: 80.7
IPR009051Alpha-helical ferredoxinSUPERFAMILY46548alpha-helical ferredoxincoord: 11..53
NoneNo IPR availablePFAMPF13534Fer4_17coord: 22..53
e-value: 7.1E-5
score: 23.3
NoneNo IPR availablePANTHERPTHR11921SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEINcoord: 8..53
NoneNo IPR availablePANTHERPTHR11921:SF29SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIALcoord: 8..53
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 23..34
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 13..43
score: 7.601

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82585contigH-paniculata_contig82585:230..460 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82585.16278.1mRNA_H-paniculata_contig82585.16278.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig82585 230..460 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig82585.16278.1 ID=prot_H-paniculata_contig82585.16278.1|Name=mRNA_H-paniculata_contig82585.16278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLM
QASASRFRLSSLRNSIWLPGQLWIHG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009051Helical_ferredxn
IPR0179004Fe4S_Fe_S_CS
IPR0178964Fe4S_Fe-S-bd