mRNA_H-paniculata_contig82585.16278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82585.16278.1
Unique NamemRNA_H-paniculata_contig82585.16278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: C5DHN3_LACTC (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Lachancea TaxID=300275 RepID=C5DHN3_LACTC)

HSP 1 Score: 100 bits (249), Expect = 3.200e-24
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:   19 NNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA---------SASRFRLSSLRNSIWL 204
            N +S++DRKKLDG+YECILCACCSTSCPSYWWN ++YLGPAVLMQA          AS+FR   L+NS+ L
Sbjct:  160 NLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDEASKFRKEMLQNSMSL 230
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A815T628_9BILA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815T628_9BILA)

HSP 1 Score: 99.8 bits (247), Expect = 4.610e-24
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   10 ALGNNK---SVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 156
            A+GN +   SV+DRKK+DGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA
Sbjct:  175 AVGNKQLFQSVEDRKKMDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 226
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A6H5GUQ3_9HEMI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GUQ3_9HEMI)

HSP 1 Score: 99.8 bits (247), Expect = 8.220e-24
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 156
            PA    N +SV+DRKKLDG+YECILCACCSTSCPSYWWN DKYLGPAVLMQA
Sbjct:  157 PAGTKQNLQSVEDRKKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 208
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: C4Y771_CLAL4 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=9 Tax=Metschnikowiaceae TaxID=27319 RepID=C4Y771_CLAL4)

HSP 1 Score: 99.4 bits (246), Expect = 8.250e-24
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA---------SASRFRLSSLRNSIWL 204
            PA    N +S++DR KLDG+YECILCACCSTSCPSYWWN  +YLGPAVLMQA          AS+FR   L+NS+ L
Sbjct:  150 PADGRENLQSIEDRAKLDGLYECILCACCSTSCPSYWWNQQQYLGPAVLMQAYRWLIDSRDQASKFRKEMLQNSMSL 226
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A813BXY5_9DINO (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BXY5_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 8.670e-24
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   19 NNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 156
            N +S++DRKKLDGMYECILCACCSTSCPSYWWN D+YLGPAVLMQA
Sbjct:   78 NLQSIEDRKKLDGMYECILCACCSTSCPSYWWNGDRYLGPAVLMQA 123
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A0K8SDS3_LYGHE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SDS3_LYGHE)

HSP 1 Score: 99.8 bits (247), Expect = 1.020e-23
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 156
            PA    N +SV+DRKKLDG+YECILCACCSTSCPSYWWN DKYLGPAVLMQA
Sbjct:  169 PAGTKQNLQSVEDRKKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQA 220
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A4P9WE09_9FUNG (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WE09_9FUNG)

HSP 1 Score: 99.4 bits (246), Expect = 1.220e-23
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:    1 PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 156
            PA    N +S+ DRKKLDG+YECILCACCSTSCPSYWWNSDKYLGPAVLMQA
Sbjct:  170 PAPERENLQSIADRKKLDGLYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 221
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: UPI0011442DCF (succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like n=1 Tax=Formica exsecta TaxID=72781 RepID=UPI0011442DCF)

HSP 1 Score: 98.2 bits (243), Expect = 1.220e-23
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    4 ARALGNNK---SVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQAS 159
            A+ +GN +   SV+DRKKLDG+YECILCACCSTSCPSYWWN DKYLGPAVLMQ S
Sbjct:  154 AKKVGNQQYLQSVEDRKKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQVS 208
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: A0A819ZWV3_9BILA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A819ZWV3_9BILA)

HSP 1 Score: 99.4 bits (246), Expect = 1.600e-23
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   25 KSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 156
            +SV+DRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA
Sbjct:  179 QSVEDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 222
[Close]
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.710e-23
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:   25 KSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLMQA 156
            +S+QDRKKLDGMYECILCACCSTSCPSYWWN+DKYLGPAVLMQA
Sbjct:  179 QSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQA 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82585.16278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C5DHN3_LACTC3.200e-2464.79Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A815T628_9BILA4.610e-2484.62Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6H5GUQ3_9HEMI8.220e-2482.69Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
C4Y771_CLAL48.250e-2461.04Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A813BXY5_9DINO8.670e-2486.96Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A0K8SDS3_LYGHE1.020e-2382.69Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A4P9WE09_9FUNG1.220e-2382.69Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
UPI0011442DCF1.220e-2378.18succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A819ZWV3_9BILA1.600e-2395.45Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
D7FWF5_ECTSI1.710e-2393.18Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82585contigH-paniculata_contig82585:230..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score99.8
Seed ortholog evalue6.1e-19
Seed eggNOG ortholog381046.XP_002553731.1
Preferred nameSDH2
KEGG rclassRC00045
KEGG koko:K00235
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categoryother localisation
GOsGO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)
EggNOG OGs38CDD@33154,3NVAA@4751,3QNWJ@4890,3RRVT@4891,3RZC6@4893,COG0479@1,KOG3049@2759
EC1.3.5.1
COG Functional cat.C
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931036.7128446-CDS-H-paniculata_contig82585:229..4601622931036.7128446-CDS-H-paniculata_contig82585:229..460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82585 230..460 -
1691481560.8237517-CDS-H-paniculata_contig82585:229..4601691481560.8237517-CDS-H-paniculata_contig82585:229..460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82585 230..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82585.16278.1prot_H-paniculata_contig82585.16278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82585 230..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82585.16278.1

>prot_H-paniculata_contig82585.16278.1 ID=prot_H-paniculata_contig82585.16278.1|Name=mRNA_H-paniculata_contig82585.16278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
PARALGNNKSVQDRKKLDGMYECILCACCSTSCPSYWWNSDKYLGPAVLM
QASASRFRLSSLRNSIWLPGQLWIHG*
back to top

mRNA from alignment at H-paniculata_contig82585:230..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82585.16278.1 ID=mRNA_H-paniculata_contig82585.16278.1|Name=mRNA_H-paniculata_contig82585.16278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig82585:230..460- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCGCGCGCGCTTGGAAATAACAAGTCTGTACAAGATCGCAAAAAGCT
TGACGGTATGTACGAGTGCATCCTGTGCGCCTGCTGCAGCACGTCTTGTC
CATCGTACTGGTGGAACTCGGACAAATACCTTGGTCCCGCGGTGCTCATG
CAGGCAAGTGCCTCAAGATTCAGATTGTCTTCCCTTCGGAATAGTATCTG
GCTCCCTGGTCAGCTGTGGATTCACGGTTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig82585:230..460-

>mRNA_H-paniculata_contig82585.16278.1 ID=mRNA_H-paniculata_contig82585.16278.1|Name=mRNA_H-paniculata_contig82585.16278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig82585:230..460- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCGCGCGCGCTTGGAAATAACAAGTCTGTACAAGATCGCAAAAAGCT
TGACGGTATGTACGAGTGCATCCTGTGCGCCTGCTGCAGCACGTCTTGTC
CATCGTACTGGTGGAACTCGGACAAATACCTTGGTCCCGCGGTGCTCATG
CAGGCAAGTGCCTCAAGATTCAGATTGTCTTCCCTTCGGAATAGTATCTG
GCTCCCTGGTCAGCTGTGGATTCACGGTTAACCCGCGCGCGCGCTTGGAA
ATAACAAGTCTGTACAAGATCGCAAAAAGCTTGACGGTATGTACGAGTGC
ATCCTGTGCGCCTGCTGCAGCACGTCTTGTCCATCGTACTGGTGGAACTC
GGACAAATACCTTGGTCCCGCGGTGCTCATGCAGGCAAGTGCCTCAAGAT
TCAGATTGTCTTCCCTTCGGAATAGTATCTGGCTCCCTGGTCAGCTGTGG
ATTCACGGTTAA
back to top