prot_H-paniculata_contig82344.16254.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig82344.16254.1
Unique Nameprot_H-paniculata_contig82344.16254.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length40
Homology
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.920e-10
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query:    1 VRSDGGGEFTGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VR+DGGGEF G F+++CRT G++QE+T   +P+YNGVAER
Sbjct:   88 VRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAER 127          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JUA6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.810e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:   41 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 81          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.870e-7
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  LCR   ++QE+T A SPEYNGVAER
Sbjct:    3 VRSDNGGEFFEGEFGKLCRKYCIKQEFTPAYSPEYNGVAER 43          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  791 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 831          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  648 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 688          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  635 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 675          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  800 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 840          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5KSH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.240e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:    3 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 43          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.240e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  661 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 701          
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.240e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 40
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  433 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 473          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2T3_9PHAE2.920e-1062.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JUA6_9PHAE1.810e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSK5_9PHAE3.870e-765.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF60_9PHAE7.230e-763.41Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE7.230e-763.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE7.230e-763.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTI6_9PHAE7.230e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KSH9_9PHAE7.240e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXF7_9PHAE7.240e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE7.240e-763.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..40
e-value: 1.6E-5
score: 26.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..40
score: 10.19
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82344contigH-paniculata_contig82344:347..466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82344.16254.1mRNA_H-paniculata_contig82344.16254.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig82344 347..466 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig82344.16254.1 ID=prot_H-paniculata_contig82344.16254.1|Name=mRNA_H-paniculata_contig82344.16254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
VRSDGGGEFTGPFSDLCRTRGVRQEYTLADSPEYNGVAER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf