mRNA_H-paniculata_contig82344.16254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82344.16254.1
Unique NamemRNA_H-paniculata_contig82344.16254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.920e-10
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VRSDGGGEFTGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VR+DGGGEF G F+++CRT G++QE+T   +P+YNGVAER
Sbjct:   88 VRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAER 127
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JUA6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.810e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:   41 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 81
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.870e-7
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  LCR   ++QE+T A SPEYNGVAER
Sbjct:    3 VRSDNGGEFFEGEFGKLCRKYCIKQEFTPAYSPEYNGVAER 43
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  791 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 831
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  648 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 688
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  635 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 675
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.230e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  800 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 840
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5KSH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.240e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:    3 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 43
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.240e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  661 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 701
[Close]
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.240e-7
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 VRSDGGGEF-TGPFSDLCRTRGVRQEYTLADSPEYNGVAER 120
            VRSD GGEF  G F  +CR   ++QE+T A SPEYNGVAER
Sbjct:  433 VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAER 473
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82344.16254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2T3_9PHAE2.920e-1062.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JUA6_9PHAE1.810e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSK5_9PHAE3.870e-765.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF60_9PHAE7.230e-763.41Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE7.230e-763.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE7.230e-763.41Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTI6_9PHAE7.230e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KSH9_9PHAE7.240e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JXF7_9PHAE7.240e-763.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE7.240e-763.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82344contigH-paniculata_contig82344:347..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.2657022-CDS-H-paniculata_contig82344:346..4661622931033.2657022-CDS-H-paniculata_contig82344:346..466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82344 347..466 -
1691481559.2864046-CDS-H-paniculata_contig82344:346..4661691481559.2864046-CDS-H-paniculata_contig82344:346..466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82344 347..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82344.16254.1prot_H-paniculata_contig82344.16254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82344 347..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82344.16254.1

>prot_H-paniculata_contig82344.16254.1 ID=prot_H-paniculata_contig82344.16254.1|Name=mRNA_H-paniculata_contig82344.16254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
VRSDGGGEFTGPFSDLCRTRGVRQEYTLADSPEYNGVAER
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mRNA from alignment at H-paniculata_contig82344:347..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82344.16254.1 ID=mRNA_H-paniculata_contig82344.16254.1|Name=mRNA_H-paniculata_contig82344.16254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at H-paniculata_contig82344:347..466- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGGTCGGACGGTGGAGGTGAATTTACGGGACCTTTTAGTGATCTTTG
TAGGACACGAGGTGTGAGGCAGGAATACACACTAGCAGACAGTCCGGAGT
ATAATGGTGTTGCTGAGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig82344:347..466-

>mRNA_H-paniculata_contig82344.16254.1 ID=mRNA_H-paniculata_contig82344.16254.1|Name=mRNA_H-paniculata_contig82344.16254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig82344:347..466- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCAGGTCGGACGGTGGAGGTGAATTTACGGGACCTTTTAGTGATCTTTG
TAGGACACGAGGTGTGAGGCAGGAATACACACTAGCAGACAGTCCGGAGT
ATAATGGTGTTGCTGAGCGCGTCAGGTCGGACGGTGGAGGTGAATTTACG
GGACCTTTTAGTGATCTTTGTAGGACACGAGGTGTGAGGCAGGAATACAC
ACTAGCAGACAGTCCGGAGTATAATGGTGTTGCTGAGCGC
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