prot_H-paniculata_contig8229.16248.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8229.16248.1
Unique Nameprot_H-paniculata_contig8229.16248.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length277
Homology
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.810e-30
Identity = 78/236 (33.05%), Postives = 123/236 (52.12%), Query Frame = 0
Query:   16 PNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDHQ-KGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRKKRKNKIDQ-----------HLRETSMLPATAG 239
            P  +  V     +  K   +G + K+K RLV  G  +   V    +S P P++AS K++L++   +   L H   +QAY  A +++E F+ +P   G     +G+ ++ I G   +GR W       L   GFEQ  ADPCVF K+VDE VV +I+IY+DD+L++ +  +  +ELLA L+     K+LG+  ++ RC I RD +    KI Q            ++ TS +PA+ G
Sbjct:  201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVA-ESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRIPASPG 435          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.650e-29
Identity = 75/212 (35.38%), Postives = 112/212 (52.83%), Query Frame = 0
Query:   24 TMMLYKRKIGEDGSVEKYKCRLVGHGDHQ-KGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRKKRKNKIDQHLRETSML 234
            +M  +  K  ++G V+K+K  LV  G  Q   V    +S P P++AS K++L++   +   L H   +QAY  A +++E F+ IP  YG     + + ++ I G   +GR W       L   GFEQ  ADPCVF K+VDE VV VI+IY+DD+L++       +ELLA L      K+ G+  ++  C I RD +    KI Q     SM+
Sbjct:    3 SMWCFSWKTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDED-CEELLASLNKKFPTKNRGEYEWFDGCAIDRDVEPGTFKISQTAYIDSMV 213          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 127 bits (318), Expect = 3.110e-29
Identity = 84/261 (32.18%), Postives = 139/261 (53.26%), Query Frame = 0
Query:    1 MQGLIDNWVWTQVEHPNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDHQK-GVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEY-GKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRK-----KRKNKIDQHLRETSML---PATAGNNTMIKKRRVED 251
            M  L +N  W  V+ P  K VV    ++  K+G DG +++YK RLV  G  Q  G+  +E   P     S ++L+SL A  DW+L  +  + A+L   + +E ++++P  + G+    V R +K + G   + R W  + +T +   G+ QS AD  +F K   +E  A++I+Y+DD++I+    + +D L + L+ + K+KDLG  +Y+L   I R +K     +RK  +D  LRET  L   PAT   +   K + +ED
Sbjct:  872 MAALEENKTWDIVKLPKEKKVVGCRWIFTTKMGADGKIDRYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGENNDVVCRLNKSLYGLKQSPRAWFTRFSTTMKQLGYVQSQADHTLFVKKSKDERRAILIVYVDDMVITGDDNQEIDNLKSCLQAEFKVKDLGQLQYFLGMEIARSKKGIFISQRKYTLDL-LRETGKLGCRPATTPLDRNWKHKIIED 1131          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.600e-28
Identity = 76/236 (32.20%), Postives = 122/236 (51.69%), Query Frame = 0
Query:   16 PNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDHQ-KGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRKKRKNKIDQ-----------HLRETSMLPATAG 239
            P  +  V +   +  K  ++G ++ +K RLV  G  Q   V    +S P P++AS K++L++   +   L H   +QAY  A +++E F+++P   G     + + ++ I G   +GR W       L   GFEQ  ADPCVF K+VDE VV +I+IY+DD+L++       +ELLA L      K+LG+ +++  C I RD +    +I Q            ++ TS +PAT G
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED-CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1010          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.710e-28
Identity = 76/236 (32.20%), Postives = 122/236 (51.69%), Query Frame = 0
Query:   16 PNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDHQ-KGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRKKRKNKIDQ-----------HLRETSMLPATAG 239
            P  +  V +   +  K  ++G ++ +K RLV  G  Q   V    +S P P++AS K++L++   +   L H   +QAY  A +++E F+++P   G     + + ++ I G   +GR W       L   GFEQ  ADPCVF K+VDE VV +I+IY+DD+L++       +ELLA L      K+LG+ +++  C I RD +    +I Q            ++ TS +PAT G
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED-CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1389          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.750e-28
Identity = 76/236 (32.20%), Postives = 122/236 (51.69%), Query Frame = 0
Query:   16 PNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDHQ-KGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRKKRKNKIDQ-----------HLRETSMLPATAG 239
            P  +  V +   +  K  ++G ++ +K RLV  G  Q   V    +S P P++AS K++L++   +   L H   +QAY  A +++E F+++P   G     + + ++ I G   +GR W       L   GFEQ  ADPCVF K+VDE VV +I+IY+DD+L++       +ELLA L      K+LG+ +++  C I RD +    +I Q            ++ TS +PAT G
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED-CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1552          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A438GJA5_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GJA5_VITVI)

HSP 1 Score: 122 bits (306), Expect = 5.060e-28
Identity = 87/282 (30.85%), Postives = 142/282 (50.35%), Query Frame = 0
Query:    1 MQGLIDNWVWTQVEHPNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDHQK-GVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIP--VEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRK-----KRKNKIDQHLRETSMLPATAGNNTMIKKRRVEDLTGSRGDTSVPIQRGSWRRSCGR 274
            +  L  N  WT ++ P  K  V    ++  K   DGSVE++K RLV  G  Q  G+  QE   P     + ++LLSL   QDW L+H+  + A+L   + +E ++EIP   E       V +  K   G     R W  + T  +   G++Q  AD  +F K    E +A++I+Y+DD+++S    + + +L   L  + ++KDLG+ +Y+L   + R RK     +RK  +D  L+ETSML     +  M  ++++    G   + S P+ RG ++R  GR
Sbjct:  152 IDALEKNGTWTIIDLPVGKRPVGCKWIFTIKYKADGSVERFKARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQHLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSFYGLKQYPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAEKMAILIVYVDDIILSGNDMEELQKLKKYLSEEFEVKDLGNLKYFLGMEVARSRKGMVVSQRKYILDL-LKETSMLGCKPIDTPMDSQKKL----GIEKE-STPVDRGRYQRLVGR 427          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 6.820e-28
Identity = 75/236 (31.78%), Postives = 122/236 (51.69%), Query Frame = 0
Query:   16 PNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDHQ-KGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRKKRKNKIDQ-----------HLRETSMLPATAG 239
            P  +  V +   +  K  ++G ++ +K RLV  G  Q   V    +S P P++AS K++L++   +   L H   +QAY  A +++E F+++P   G     + + ++ I G   +GR W       L   GFEQ  ADPCVF K+VD+ VV +I+IY+DD+L++       +ELLA L      K+LG+ +++  C I RD +    +I Q            ++ TS +PAT G
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDED-CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG 1409          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6D2JTF8_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JTF8_9BRAS)

HSP 1 Score: 122 bits (307), Expect = 9.070e-28
Identity = 72/216 (33.33%), Postives = 116/216 (53.70%), Query Frame = 0
Query:   10 WTQVEHPNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHG-DHQKGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEYGKLPG------AVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITRDRK 218
            W     P++K  +    +YK K+  DGS+E+YK RLV  G   Q+GV   +   P     + K LL++ A +DW L  +    A+L   +++E ++ +P  Y   PG      AV R  K + G   A R W +K ++ L   GF +SHAD  +F K V  + +AV++ Y+DD++I++     +D+L  DL+   +L+DLG  RY+L   I R ++
Sbjct:  991 WEICSLPDDKHAIGCRWVYKTKLNADGSLERYKARLVAKGFTQQEGVDFVDTFSPVAKMTTVKTLLAVAAAKDWSLTQLDISNAFLNGDLDEEIYMTLPPGYTAKPGESLPPNAVCRLKKSLYGLKQASRQWFLKFSSVLLKLGFAKSHADHTLFVKNVSGKYLAVLV-YVDDIIITSNCDADVDQLKEDLKKAFRLRDLGALRYFLGLEIARSKR 1205          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A2Z7D0U1_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7D0U1_9LAMI)

HSP 1 Score: 122 bits (305), Expect = 1.580e-27
Identity = 76/221 (34.39%), Postives = 116/221 (52.49%), Query Frame = 0
Query:    1 MQGLIDNWVWTQVEHPNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHG-DHQKGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQESFVEIPVEY----GKLPG-AVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQSHADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLKDLGDARYYLRCHITR 215
            ++ L  N  W+ V  P  K VV    +YK K   DGS+++YK RLV  G   Q+G+   E   P     + + LL+L A + W L  +    A+L   +++E ++ +P  Y    G LP  AV +  K + G   A R W  K ++ L + GF QSHAD  +F K+ D  V  V+++Y+DD++I+T   +   EL + L    KLKDLG  +Y+L   + R
Sbjct:  861 LKALELNHTWSIVSLPLGKSVVGCRWVYKAKFAADGSLQRYKARLVAKGYTQQEGLDYLETFSPVAKMVTVRTLLALAAARGWSLIQLDVNNAFLHGELDEEVYMSLPPGYSSEGGPLPPQAVCKLHKSLYGLKQASRQWFAKFSSTLLSVGFSQSHADNSLFIKVRDN-VFLVLLVYVDDIVIATNNEEAASELKSFLNNKFKLKDLGKLKYFLGIELAR 1080          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLS1_9PHAE4.810e-3033.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIS9_9PHAE1.650e-2935.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T5R4_CAJCA3.110e-2932.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KSG8_9PHAE2.600e-2832.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.710e-2832.20Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.750e-2832.20Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A438GJA5_VITVI5.060e-2830.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JN00_9PHAE6.820e-2831.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6D2JTF8_9BRAS9.070e-2833.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z7D0U1_9LAMI1.580e-2734.39Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..220
e-value: 1.1E-30
score: 107.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..212
NoneNo IPR availablePANTHERPTHR11439:SF267coord: 3..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8229contigH-paniculata_contig8229:338..1199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8229.16248.1mRNA_H-paniculata_contig8229.16248.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8229 320..1768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8229.16248.1 ID=prot_H-paniculata_contig8229.16248.1|Name=mRNA_H-paniculata_contig8229.16248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MQGLIDNWVWTQVEHPNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGD
HQKGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQ
ESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQS
HADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLK
DLGDARYYLRCHITRDRKKRKNKIDQHLRETSMLPATAGNNTMIKKRRVE
DLTGSRGDTSVPIQRGSWRRSCGRRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like