mRNA_H-paniculata_contig8229.16248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8229.16248.1
Unique NamemRNA_H-paniculata_contig8229.16248.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.130e-33
Identity = 81/199 (40.70%), Postives = 119/199 (59.80%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW AT TRP IA+A+    ++C +P M H +A + IL  VR T+ +GIT+  G   G+ M  + D DYA+    RRSVS G ++ GG  ++  SR  +   + TTE EYVA+ +++ EVLFL QV  F++P        + EDNQ A ++AHN   +  + HI V+HH +R+ VE K++ +  V T  QHAD  TK +
Sbjct:  107 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAI 305          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.560e-33
Identity = 80/199 (40.20%), Postives = 119/199 (59.80%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW AT TRP IA+A+    ++C +P M H +A + IL  VR T+ +GIT+  G   G+ M  + D DYA+    RRSVS G ++ GG  ++  SR  +   + TTE EYVA+ +++ EVLFL QV  F++P        + EDNQ A ++ HN   +  + HI V+HH +R+ VE K++ + +V T  QHAD  TK +
Sbjct:  162 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAI 360          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.930e-33
Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW AT TRP IA+A+    ++C +P M H +A + IL  VR T+ +GIT+  G   G+ M  + D DYA+    RRSVS G ++ GG  ++  SR  +   + TTE EYVA+ +++ EVLFL QV  F++P        + EDNQ A ++AHN   +  + HI V+HH +R+ VE K++ + +V T  QHAD  TK +
Sbjct:  224 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAI 422          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.400e-32
Identity = 79/199 (39.70%), Postives = 117/199 (58.79%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            VMW AT TRP IA+A+    ++C +P M H +A + IL  VR T+ +GIT+  G   G+ M  + D DY      RRSVS G ++ GG  ++  SR  +   + TTE EYVA+ +++ EVLFL QV  F++P        + EDNQ A ++AHN   +  + HI  +HH++R  VE K++ + +V +  QHAD  TK +
Sbjct:   79 VMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAI 277          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JPC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC7_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 1.400e-31
Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGG-AISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW AT TRP IA+A+    ++C +P + H  A + IL   R T+  G ++  G   G  +  YAD D+A+    RRSVS G +  GG A+S  SR  +   + TTE EYVAL ++V E+LFL Q+  F++P +      + EDNQ A ++A N  ++W + HI+V+HH +R+ VE K++ V++V +  Q  D  TK L
Sbjct:  169 LMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMGILGFARRTSHFGTSFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNWNSKHINVRHHFLRELVERKEISVIHVPSPYQRGDFLTKSL 367          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.240e-31
Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGG-AISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW AT TRP IA+A+    ++C +P + H  A + IL   R T+  GI++  G   G+ +  YAD D+A+    RRSVS G +  GG A+S  SR  +   + TTE EYVAL ++V E+LFL Q+  F++P +      + EDNQ A ++A N  ++  + HI V+HH +R+ VE K++ V++V +  Q AD  TK L
Sbjct:  112 LMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 310          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.170e-31
Identity = 80/199 (40.20%), Postives = 120/199 (60.30%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW AT TRP IA+A+    ++C +P M H +A + IL  VR T+ +GIT+  G   G+ M  + D DYA+    RRSVS G ++ GG  ++  SR  +   + TTE EYVA+ +++ EVLFL QV  F++P        + EDNQ A ++AHN   +  + HI V+HH +R+ VE K++ + +V +  QHAD  TK +
Sbjct: 1258 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 1456          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD11_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 8.460e-31
Identity = 79/199 (39.70%), Postives = 118/199 (59.30%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGG-AISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW  T TRP IA+A+    ++C +P M H +A + IL  VR T+ +GIT+  G   G+ M  ++D DYA+    RRSV  G ++ GG  ++  SR      + TTE EYVA+ +++ EVLFL QV  F++P        + EDNQ A ++AHN   +  + HI V+HH +R+ VE K++ + +V T  QHAD  TK +
Sbjct:  250 LMWLVTQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFSDADYASKATDRRSVPGGLMMCGGECVTWFSRMQRCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAI 448          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.700e-31
Identity = 81/197 (41.12%), Postives = 113/197 (57.36%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYVGQDC-GVEMLAYADLDYATCQDSRRSVSRGALL-LGGAISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTK 1412
            +MW AT TRP IA A     ++C +P M H +A + IL  VR T+ +GIT+ G    G+ M  + D DYA+    RRSVS G ++ + G ++  SR  +   + TTE EYVA+ +++ EVLFL QV  FI+P        + EDNQ A + AHN   +    HI V HH +R+ VE K + + +V T  QHAD  TK
Sbjct:  114 LMWLATQTRPDIADAARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGGVTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQVWRFILPDASMPCIPVFEDNQGAIQNAHNPIINSNLKHIDVMHHFIRELVERKDITITHVPTQVQHADFLTK 310          
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 9.690e-31
Identity = 78/199 (39.20%), Postives = 119/199 (59.80%), Query Frame = 3
Query:  828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
            +MW AT TRP IA+A+    ++C +P M H +A + IL  VR T+ +GIT+  G   G+ M  + D D A+    RRSVS G ++ GG  ++  SR  +   + TTEVEYVA+ +++ EVLFL QV   ++   +     + EDNQ A ++AHN   +  + HI V+HH +R+ VE K++ + +V +  QHAD  TK +
Sbjct:  160 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP70_9PHAE1.130e-3340.70Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE2.560e-3340.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE2.930e-3340.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8K2_9PHAE3.400e-3239.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPC7_9PHAE1.400e-3139.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT9_9PHAE2.240e-3139.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE3.170e-3140.20Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KD11_9PHAE8.460e-3139.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2P8_9PHAE8.700e-3141.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJP2_9PHAE9.690e-3139.20Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8229contigH-paniculata_contig8229:320..1768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.8
Seed ortholog evalue2e-24
Seed eggNOG ortholog981085.XP_010113352.1
Preferred nameTRRAP
KEGG koko:K08852,ko:K08874
KEGG Pathwayko04140,ko04141,ko04210,ko04932,ko05010,ko05166,map04140,map04141,map04210,map04932,map05010,map05166
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the PI3 PI4-kinase family
EggNOG OGs37KZ4@33090,3GEXY@35493,4JJF8@91835,COG2801@1,COG5032@1,KOG0017@2759,KOG0889@2759
EC2.7.11.1
COG Functional cat.BDLT
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03021,ko03036
Exons2
Model size1418
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8229.16248.1prot_H-paniculata_contig8229.16248.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8229 338..1199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.1395454-UTR-H-paniculata_contig8229:319..3371622931032.1395454-UTR-H-paniculata_contig8229:319..337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8229 320..337 +
1691481558.8172758-UTR-H-paniculata_contig8229:319..3371691481558.8172758-UTR-H-paniculata_contig8229:319..337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8229 320..337 +
1622931032.1897867-UTR-H-paniculata_contig8229:1199..17681622931032.1897867-UTR-H-paniculata_contig8229:1199..1768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8229 1200..1768 +
1691481558.8433726-UTR-H-paniculata_contig8229:1199..17681691481558.8433726-UTR-H-paniculata_contig8229:1199..1768Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8229 1200..1768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931032.1588883-CDS-H-paniculata_contig8229:337..10271622931032.1588883-CDS-H-paniculata_contig8229:337..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8229 338..1027 +
1691481558.8271058-CDS-H-paniculata_contig8229:337..10271691481558.8271058-CDS-H-paniculata_contig8229:337..1027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8229 338..1027 +
1622931032.1742015-CDS-H-paniculata_contig8229:1058..11991622931032.1742015-CDS-H-paniculata_contig8229:1058..1199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8229 1059..1199 +
1691481558.8351216-CDS-H-paniculata_contig8229:1058..11991691481558.8351216-CDS-H-paniculata_contig8229:1058..1199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8229 1059..1199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8229.16248.1

>prot_H-paniculata_contig8229.16248.1 ID=prot_H-paniculata_contig8229.16248.1|Name=mRNA_H-paniculata_contig8229.16248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MQGLIDNWVWTQVEHPNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGD
HQKGVHLQEASPPAPAAASTKMLLSLVAIQDWELRHVGFEQAYLQAPINQ
ESFVEIPVEYGKLPGAVGRFDKVIDGSVLAGRCWSMKVTTDLTAKGFEQS
HADPCVFCKIVDEEVVAVIIIYMDDLLISTKGPKIMDELLADLRLDHKLK
DLGDARYYLRCHITRDRKKRKNKIDQHLRETSMLPATAGNNTMIKKRRVE
DLTGSRGDTSVPIQRGSWRRSCGRRQ*
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mRNA from alignment at H-paniculata_contig8229:320..1768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8229.16248.1 ID=mRNA_H-paniculata_contig8229.16248.1|Name=mRNA_H-paniculata_contig8229.16248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1449bp|location=Sequence derived from alignment at H-paniculata_contig8229:320..1768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGCGGAGGAAGTCGAGATGCAAGGCCTCATCGACAACTGGGTTTGGAC GCAGGTGGAGCACCCGAATAACAAGCTGGTCGTGAGGACGATGATGCTCT ACAAAAGGAAGATCGGCGAGGATGGTAGCGTGGAGAAATACAAGTGCCGC CTGGTCGGCCACGGGGACCATCAGAAGGGTGTCCACTTGCAGGAAGCTTC GCCCCCCGCACCCGCAGCGGCCAGCACAAAAATGTTGTTGTCACTTGTGG CAATCCAGGACTGGGAGCTTCGGCACGTCGGCTTTGAACAAGCGTATCTG CAGGCGCCCATCAACCAGGAGAGTTTCGTCGAAATTCCCGTAGAATACGG GAAGCTCCCAGGAGCGGTGGGGCGCTTTGATAAGGTAATCGACGGATCGG TGCTAGCCGGCAGATGCTGGAGTATGAAGGTTACCACGGACCTCACGGCG AAAGGGTTCGAGCAATCGCACGCCGATCCGTGCGTGTTTTGCAAGATCGT GGACGAGGAGGTGGTCGCAGTGATCATCATATACATGGACGACCTTCTAA TCAGTACCAAGGGACCCAAAATTATGGACGAGTTGCTGGCAGACCTGCGA TTGGATCACAAGCTCAAAGACCTGGGAGATGCAAGATACTATTTGAGATG TCACATTACCCGTGATAGGAAAAAGAGGAAGAACAAGATTGACCAGCATC TACGCGAGGTCTATGGCCGAACATTTCGGGATAATCAAGACCAGCATGCT GCCGGCCACGGCGGGAAATAACACCATGATCAAGAAACGACGGGTCGAAG ACCTTACAGGAAGCCGAGGAGATACGAGCGTTCCCATACAGAGAGGTAGT TGGAGGAGGTCATGTGGGCGGCGACAATGACGCGACCCGGCATCGCACAC GCCATACACACTACGACAAAGTTCTGTGAGAACCCAGGGATGGAGCACAA GAGGGCTGTGGTGAAGATTCTGCAGTGCGTACGAACGACTGCGGACCTGG GAATCACCTACGTCGGACAGGACTGCGGGGTCGAAATGTTGGCTTACGCT GACTTGGACTACGCAACATGCCAAGACAGTCGACGCTCGGTATCCCGCGG AGCGTTACTGCTGGGGGGGGCGATCAGTGGCCACTCGAGGGCTTAGGAGG TGACAGCGGTGGGGACAACAGAAGTCGAGTACGTGGCGTTGGTGGAGATG GTGAACGAAGTCCTGTTTCTGCTTCAAGTGCAAGCGTTCATAATGCCGAT GCTGGAGCACTACCCAGCAATAATGAAGGAAGACAACCAAAGGGCCGAAA AGATGGCCCACAACAAGCAGAACAGTTGGAGGACGTGTCACATCCACGTG AAGCACCACATTGTTCGCGATGCGGTTGAGGCTAAGAAGGTTGACGTAGT CTATGTGGGGACGGGAGAGCAACACGCGGACGTACACACGAAGGTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8229:320..1768+

>mRNA_H-paniculata_contig8229.16248.1 ID=mRNA_H-paniculata_contig8229.16248.1|Name=mRNA_H-paniculata_contig8229.16248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig8229:320..1768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGGCCTCATCGACAACTGGGTTTGGACGCAGGTGGAGCACCCGAA
TAACAAGCTGGTCGTGAGGACGATGATGCTCTACAAAAGGAAGATCGGCG
AGGATGGTAGCGTGGAGAAATACAAGTGCCGCCTGGTCGGCCACGGGGAC
CATCAGAAGGGTGTCCACTTGCAGGAAGCTTCGCCCCCCGCACCCGCAGC
GGCCAGCACAAAAATGTTGTTGTCACTTGTGGCAATCCAGGACTGGGAGC
TTCGGCACGTCGGCTTTGAACAAGCGTATCTGCAGGCGCCCATCAACCAG
GAGAGTTTCGTCGAAATTCCCGTAGAATACGGGAAGCTCCCAGGAGCGGT
GGGGCGCTTTGATAAGGTAATCGACGGATCGGTGCTAGCCGGCAGATGCT
GGAGTATGAAGGTTACCACGGACCTCACGGCGAAAGGGTTCGAGCAATCG
CACGCCGATCCGTGCGTGTTTTGCAAGATCGTGGACGAGGAGGTGGTCGC
AGTGATCATCATATACATGGACGACCTTCTAATCAGTACCAAGGGACCCA
AAATTATGGACGAGTTGCTGGCAGACCTGCGATTGGATCACAAGCTCAAA
GACCTGGGAGATGCAAGATACTATTTGAGATGTCACATTACCCGTGATAG
GAAAAAGAGGAAGAACAAGATTGACCAGCATCTACGCGAGATGCAAGGCC
TCATCGACAACTGGGTTTGGACGCAGGTGGAGCACCCGAATAACAAGCTG
GTCGTGAGGACGATGATGCTCTACAAAAGGAAGATCGGCGAGGATGGTAG
CGTGGAGAAATACAAGTGCCGCCTGGTCGGCCACGGGGACCATCAGAAGG
GTGTCCACTTGCAGGAAGCTTCGCCCCCCGCACCCGCAGCGGCCAGCACA
AAAATGTTGTTGTCACTTGTGGCAATCCAGGACTGGGAGCTTCGGCACGT
CGGCTTTGAACAAGCGTATCTGCAGGCGCCCATCAACCAGGAGAGTTTCG
TCGAAATTCCCGTAGAATACGGGAAGCTCCCAGGAGCGGTGGGGCGCTTT
GATAAGGTAATCGACGGATCGGTGCTAGCCGGCAGATGCTGGAGTATGAA
GGTTACCACGGACCTCACGGCGAAAGGGTTCGAGCAATCGCACGCCGATC
CGTGCGTGTTTTGCAAGATCGTGGACGAGGAGGTGGTCGCAGTGATCATC
ATATACATGGACGACCTTCTAATCAGTACCAAGGGACCCAAAATTATGGA
CGAGTTGCTGGCAGACCTGCGATTGGATCACAAGCTCAAAGACCTGGGAG
ATGCAAGATACTATTTGAGATGTCACATTACCCGTGATAGGAAAAAGAGG
AAGAACAAGATTGACCAGCATCTACGCGAGACCAGCATGCTGCCGGCCAC
GGCGGGAAATAACACCATGATCAAGAAACGACGGGTCGAAGACCTTACAG
GAAGCCGAGGAGATACGAGCGTTCCCATACAGAGAGGTAGTTGGAGGAGG
TCATGTGGGCGGCGACAATGAACCAGCATGCTGCCGGCCACGGCGGGAAA
TAACACCATGATCAAGAAACGACGGGTCGAAGACCTTACAGGAAGCCGAG
GAGATACGAGCGTTCCCATACAGAGAGGTAGTTGGAGGAGGTCATGTGGG
CGGCGACAATGA
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