mRNA_H-paniculata_contig8229.16248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.130e-33 Identity = 81/199 (40.70%), Postives = 119/199 (59.80%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW AT TRP IA+A+ ++C +P M H +A + IL VR T+ +GIT+ G G+ M + D DYA+ RRSVS G ++ GG ++ SR + + TTE EYVA+ +++ EVLFL QV F++P + EDNQ A ++AHN + + HI V+HH +R+ VE K++ + V T QHAD TK +
Sbjct: 107 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAI 305
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.560e-33 Identity = 80/199 (40.20%), Postives = 119/199 (59.80%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW AT TRP IA+A+ ++C +P M H +A + IL VR T+ +GIT+ G G+ M + D DYA+ RRSVS G ++ GG ++ SR + + TTE EYVA+ +++ EVLFL QV F++P + EDNQ A ++ HN + + HI V+HH +R+ VE K++ + +V T QHAD TK +
Sbjct: 162 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAI 360
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.930e-33 Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW AT TRP IA+A+ ++C +P M H +A + IL VR T+ +GIT+ G G+ M + D DYA+ RRSVS G ++ GG ++ SR + + TTE EYVA+ +++ EVLFL QV F++P + EDNQ A ++AHN + + HI V+HH +R+ VE K++ + +V T QHAD TK +
Sbjct: 224 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAI 422
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 134 bits (338), Expect = 3.400e-32 Identity = 79/199 (39.70%), Postives = 117/199 (58.79%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
VMW AT TRP IA+A+ ++C +P M H +A + IL VR T+ +GIT+ G G+ M + D DY RRSVS G ++ GG ++ SR + + TTE EYVA+ +++ EVLFL QV F++P + EDNQ A ++AHN + + HI +HH++R VE K++ + +V + QHAD TK +
Sbjct: 79 VMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAI 277
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JPC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC7_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.400e-31 Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGG-AISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW AT TRP IA+A+ ++C +P + H A + IL R T+ G ++ G G + YAD D+A+ RRSVS G + GG A+S SR + + TTE EYVAL ++V E+LFL Q+ F++P + + EDNQ A ++A N ++W + HI+V+HH +R+ VE K++ V++V + Q D TK L
Sbjct: 169 LMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMGILGFARRTSHFGTSFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNWNSKHINVRHHFLRELVERKEISVIHVPSPYQRGDFLTKSL 367
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE) HSP 1 Score: 132 bits (332), Expect = 2.240e-31 Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGG-AISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW AT TRP IA+A+ ++C +P + H A + IL R T+ GI++ G G+ + YAD D+A+ RRSVS G + GG A+S SR + + TTE EYVAL ++V E+LFL Q+ F++P + + EDNQ A ++A N ++ + HI V+HH +R+ VE K++ V++V + Q AD TK L
Sbjct: 112 LMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 310
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 138 bits (348), Expect = 3.170e-31 Identity = 80/199 (40.20%), Postives = 120/199 (60.30%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW AT TRP IA+A+ ++C +P M H +A + IL VR T+ +GIT+ G G+ M + D DYA+ RRSVS G ++ GG ++ SR + + TTE EYVA+ +++ EVLFL QV F++P + EDNQ A ++AHN + + HI V+HH +R+ VE K++ + +V + QHAD TK +
Sbjct: 1258 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 1456
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KD11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD11_9PHAE) HSP 1 Score: 137 bits (344), Expect = 8.460e-31 Identity = 79/199 (39.70%), Postives = 118/199 (59.30%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGG-AISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW T TRP IA+A+ ++C +P M H +A + IL VR T+ +GIT+ G G+ M ++D DYA+ RRSV G ++ GG ++ SR + TTE EYVA+ +++ EVLFL QV F++P + EDNQ A ++AHN + + HI V+HH +R+ VE K++ + +V T QHAD TK +
Sbjct: 250 LMWLVTQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFSDADYASKATDRRSVPGGLMMCGGECVTWFSRMQRCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAI 448
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE) HSP 1 Score: 131 bits (329), Expect = 8.700e-31 Identity = 81/197 (41.12%), Postives = 113/197 (57.36%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYVGQDC-GVEMLAYADLDYATCQDSRRSVSRGALL-LGGAISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTK 1412
+MW AT TRP IA A ++C +P M H +A + IL VR T+ +GIT+ G G+ M + D DYA+ RRSVS G ++ + G ++ SR + + TTE EYVA+ +++ EVLFL QV FI+P + EDNQ A + AHN + HI V HH +R+ VE K + + +V T QHAD TK
Sbjct: 114 LMWLATQTRPDIADAARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGGVTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQVWRFILPDASMPCIPVFEDNQGAIQNAHNPIINSNLKHIDVMHHFIRELVERKDITITHVPTQVQHADFLTK 310
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 132 bits (333), Expect = 9.690e-31 Identity = 78/199 (39.20%), Postives = 119/199 (59.80%), Query Frame = 3
Query: 828 VMWAATMTRPGIAHAIHTTTKFCENPGMEHKRAVVKILQCVRTTADLGITYV-GQDCGVEMLAYADLDYATCQDSRRSVSRGALLLGGA-ISGHSRA*EVTAVGTTEVEYVALVEMVNEVLFLLQVQAFIMPMLEHYPAIMKEDNQRAEKMAHNKQNSWRTCHIHVKHHIVRDAVEAKKVDVVYVGTGEQHADVHTKVL 1418
+MW AT TRP IA+A+ ++C +P M H +A + IL VR T+ +GIT+ G G+ M + D D A+ RRSVS G ++ GG ++ SR + + TTEVEYVA+ +++ EVLFL QV ++ + + EDNQ A ++AHN + + HI V+HH +R+ VE K++ + +V + QHAD TK +
Sbjct: 160 LMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 358 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8229.16248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8229.16248.1 >prot_H-paniculata_contig8229.16248.1 ID=prot_H-paniculata_contig8229.16248.1|Name=mRNA_H-paniculata_contig8229.16248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp MQGLIDNWVWTQVEHPNNKLVVRTMMLYKRKIGEDGSVEKYKCRLVGHGDback to top mRNA from alignment at H-paniculata_contig8229:320..1768+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8229.16248.1 ID=mRNA_H-paniculata_contig8229.16248.1|Name=mRNA_H-paniculata_contig8229.16248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1449bp|location=Sequence derived from alignment at H-paniculata_contig8229:320..1768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8229:320..1768+ >mRNA_H-paniculata_contig8229.16248.1 ID=mRNA_H-paniculata_contig8229.16248.1|Name=mRNA_H-paniculata_contig8229.16248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig8229:320..1768+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |