prot_H-paniculata_contig8220.16245.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8220.16245.1
Unique Nameprot_H-paniculata_contig8220.16245.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length51
Homology
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: D7G1F0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 9.450e-26
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 0
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 51
            VESD+DLPFAC+ICRQGF DPIVTNCGHYFCE+CAQ+HYKT+ RCAACGKQ
Sbjct:  284 VESDDDLPFACLICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQ 334          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A836CP80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP80_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.580e-20
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 51
            V+ D DLPFAC ICR+ FRDP+VTNCGH+FCE CA D+YK   RCAACGKQ
Sbjct:  262 VDEDGDLPFACFICREAFRDPVVTNCGHHFCEACAMDNYKRSTRCAACGKQ 312          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: I2CSE3_NANGC (Pre-mrna-splicing factor cwc-24 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSE3_NANGC)

HSP 1 Score: 84.3 bits (207), Expect = 3.350e-20
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGK 50
            ++ D++LPFAC +CR+GFRDP+VT CGHYFC  CA +H+K D  CAACG+
Sbjct:   34 IKDDDELPFACFLCREGFRDPVVTVCGHYFCSPCAVEHHKNDPTCAACGE 83          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A6V1N7Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N7Z0_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 1.030e-19
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 51
            ++SD++LPFAC ICR+ F  P+ T CGHYFCE+CA +HYKTD+RCA CGKQ
Sbjct:  213 IDSDDELPFACHICREDFEQPVATLCGHYFCEECALEHYKTDKRCAICGKQ 263          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A482S3A6_9ARCH (RING-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3A6_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 3.290e-18
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 51
            ++ DEDLPFAC +CR  F DP+VT CGHYFCE CA  H+K    CAAC KQ
Sbjct:   19 IKEDEDLPFACFLCRNPFVDPVVTPCGHYFCEACALAHHKKSTHCAACSKQ 69          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A1X2HJ51_SYNRA (Pre-mRNA-splicing factor CWC24 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HJ51_SYNRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.870e-18
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    2 ESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACG 49
            +SDE+LPFAC++CR+ F++P+VT CGHYFCEKCA DH +T  +C ACG
Sbjct:  193 DSDEELPFACLLCREEFKEPVVTKCGHYFCEKCAIDHQRTSPKCYACG 240          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: UPI001939BBEE (E3 ubiquitin-protein ligase RNF113A-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939BBEE)

HSP 1 Score: 82.0 bits (201), Expect = 2.430e-17
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    3 SDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 51
             DEDLPF C+ICR  F+DPIVT C HY+CEKCA DHYK  +RC  CG Q
Sbjct:  237 DDEDLPFKCLICRNTFKDPIVTKCKHYYCEKCALDHYKKSKRCFVCGTQ 285          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A226EEG1_FOLCA (Zinc finger CCCH domain-containing protein 1 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EEG1_FOLCA)

HSP 1 Score: 81.6 bits (200), Expect = 4.970e-17
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0
Query:    3 SDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 51
             DEDLPF CV+CR  F +P+VT C HYFCEKCA DHYK  QRC AC  Q
Sbjct:  264 DDEDLPFKCVLCRSSFTNPVVTKCNHYFCEKCALDHYKKSQRCFACKAQ 312          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: B3RMM5_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RMM5_TRIAD)

HSP 1 Score: 80.9 bits (198), Expect = 7.200e-17
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    2 ESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 51
            +SD++LPFAC ICR+ F++P+VT C HYFCEKCA DHY+  QRC  C  Q
Sbjct:  241 DSDDELPFACFICRESFKNPVVTKCQHYFCEKCALDHYRKTQRCFVCSAQ 290          
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A8H7PJQ2_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PJQ2_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 1.950e-16
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    2 ESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACG 49
            +SD++LPFAC+ICRQ F +PIVT CGHYFCEKCA  HY    +C ACG
Sbjct:  228 DSDDELPFACLICRQEFTNPIVTKCGHYFCEKCAIKHYTKSPKCFACG 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F0_ECTSI9.450e-2686.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CP80_9STRA1.580e-2072.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I2CSE3_NANGC3.350e-2062.00Pre-mrna-splicing factor cwc-24 (Fragment) n=1 Tax... [more]
A0A6V1N7Z0_HETAK1.030e-1966.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482S3A6_9ARCH3.290e-1862.75RING-type domain-containing protein (Fragment) n=1... [more]
A0A1X2HJ51_SYNRA7.870e-1864.58Pre-mRNA-splicing factor CWC24 n=1 Tax=Syncephalas... [more]
UPI001939BBEE2.430e-1767.35E3 ubiquitin-protein ligase RNF113A-like n=1 Tax=S... [more]
A0A226EEG1_FOLCA4.970e-1767.35Zinc finger CCCH domain-containing protein 1 n=1 T... [more]
B3RMM5_TRIAD7.200e-1762.00Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A8H7PJQ2_9FUNG1.950e-1666.67Pre-mRNA-splicing factor CWC24 n=1 Tax=Umbelopsis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 11..48
e-value: 1.9E-6
score: 37.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 11..48
score: 10.66
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 10..50
e-value: 2.5E-9
score: 36.9
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 9..50
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 9..51
e-value: 9.0E-15
score: 56.0
IPR039971Pre-mRNA-splicing factor CWC24-likePANTHERPTHR12930ZINC FINGER PROTEIN 183coord: 3..51
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 26..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8220contigH-paniculata_contig8220:9569..9721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8220.16245.1mRNA_H-paniculata_contig8220.16245.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8220 9569..9721 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8220.16245.1 ID=prot_H-paniculata_contig8220.16245.1|Name=mRNA_H-paniculata_contig8220.16245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGK
Q
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR039971CWC24-like
IPR017907Znf_RING_CS