mRNA_H-paniculata_contig8220.16245.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8220.16245.1
Unique NamemRNA_H-paniculata_contig8220.16245.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: D7G1F0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F0_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 9.450e-26
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 153
            VESD+DLPFAC+ICRQGF DPIVTNCGHYFCE+CAQ+HYKT+ RCAACGKQ
Sbjct:  284 VESDDDLPFACLICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQ 334
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A836CP80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP80_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.580e-20
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 153
            V+ D DLPFAC ICR+ FRDP+VTNCGH+FCE CA D+YK   RCAACGKQ
Sbjct:  262 VDEDGDLPFACFICREAFRDPVVTNCGHHFCEACAMDNYKRSTRCAACGKQ 312
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: I2CSE3_NANGC (Pre-mrna-splicing factor cwc-24 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CSE3_NANGC)

HSP 1 Score: 84.3 bits (207), Expect = 3.350e-20
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGK 150
            ++ D++LPFAC +CR+GFRDP+VT CGHYFC  CA +H+K D  CAACG+
Sbjct:   34 IKDDDELPFACFLCREGFRDPVVTVCGHYFCSPCAVEHHKNDPTCAACGE 83
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A6V1N7Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N7Z0_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 1.030e-19
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 153
            ++SD++LPFAC ICR+ F  P+ T CGHYFCE+CA +HYKTD+RCA CGKQ
Sbjct:  213 IDSDDELPFACHICREDFEQPVATLCGHYFCEECALEHYKTDKRCAICGKQ 263
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A482S3A6_9ARCH (RING-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3A6_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 3.290e-18
Identity = 32/51 (62.75%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 153
            ++ DEDLPFAC +CR  F DP+VT CGHYFCE CA  H+K    CAAC KQ
Sbjct:   19 IKEDEDLPFACFLCRNPFVDPVVTPCGHYFCEACALAHHKKSTHCAACSKQ 69
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A1X2HJ51_SYNRA (Pre-mRNA-splicing factor CWC24 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HJ51_SYNRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.870e-18
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 ESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACG 147
            +SDE+LPFAC++CR+ F++P+VT CGHYFCEKCA DH +T  +C ACG
Sbjct:  193 DSDEELPFACLLCREEFKEPVVTKCGHYFCEKCAIDHQRTSPKCYACG 240
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: UPI001939BBEE (E3 ubiquitin-protein ligase RNF113A-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939BBEE)

HSP 1 Score: 82.0 bits (201), Expect = 2.430e-17
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    7 SDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 153
             DEDLPF C+ICR  F+DPIVT C HY+CEKCA DHYK  +RC  CG Q
Sbjct:  237 DDEDLPFKCLICRNTFKDPIVTKCKHYYCEKCALDHYKKSKRCFVCGTQ 285
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A226EEG1_FOLCA (Zinc finger CCCH domain-containing protein 1 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EEG1_FOLCA)

HSP 1 Score: 81.6 bits (200), Expect = 4.970e-17
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 SDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 153
             DEDLPF CV+CR  F +P+VT C HYFCEKCA DHYK  QRC AC  Q
Sbjct:  264 DDEDLPFKCVLCRSSFTNPVVTKCNHYFCEKCALDHYKKSQRCFACKAQ 312
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: B3RMM5_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RMM5_TRIAD)

HSP 1 Score: 80.9 bits (198), Expect = 7.200e-17
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 ESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGKQ 153
            +SD++LPFAC ICR+ F++P+VT C HYFCEKCA DHY+  QRC  C  Q
Sbjct:  241 DSDDELPFACFICRESFKNPVVTKCQHYFCEKCALDHYRKTQRCFVCSAQ 290
[Close]
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Match: A0A8H7PJQ2_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PJQ2_9FUNG)

HSP 1 Score: 79.7 bits (195), Expect = 1.950e-16
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 ESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACG 147
            +SD++LPFAC+ICRQ F +PIVT CGHYFCEKCA  HY    +C ACG
Sbjct:  228 DSDDELPFACLICRQEFTNPIVTKCGHYFCEKCAIKHYTKSPKCFACG 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8220.16245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F0_ECTSI9.450e-2686.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CP80_9STRA1.580e-2072.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I2CSE3_NANGC3.350e-2062.00Pre-mrna-splicing factor cwc-24 (Fragment) n=1 Tax... [more]
A0A6V1N7Z0_HETAK1.030e-1966.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482S3A6_9ARCH3.290e-1862.75RING-type domain-containing protein (Fragment) n=1... [more]
A0A1X2HJ51_SYNRA7.870e-1864.58Pre-mRNA-splicing factor CWC24 n=1 Tax=Syncephalas... [more]
UPI001939BBEE2.430e-1767.35E3 ubiquitin-protein ligase RNF113A-like n=1 Tax=S... [more]
A0A226EEG1_FOLCA4.970e-1767.35Zinc finger CCCH domain-containing protein 1 n=1 T... [more]
B3RMM5_TRIAD7.200e-1762.00Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A8H7PJQ2_9FUNG1.950e-1666.67Pre-mRNA-splicing factor CWC24 n=1 Tax=Umbelopsis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8220contigH-paniculata_contig8220:9569..9721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue7.3e-21
Seed eggNOG ortholog2880.D7G1F0
Preferred nameRNF113A
KEGG koko:K03661,ko:K13127,ko:K15696
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016020,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0030154,GO:0030182,GO:0031323,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990904
EggNOG free text desc.snoRNA splicing
EggNOG OGsCOG5152@1,KOG1813@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931031.8204582-CDS-H-paniculata_contig8220:9568..97211622931031.8204582-CDS-H-paniculata_contig8220:9568..9721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8220 9569..9721 +
1691481558.7114563-CDS-H-paniculata_contig8220:9568..97211691481558.7114563-CDS-H-paniculata_contig8220:9568..9721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8220 9569..9721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8220.16245.1prot_H-paniculata_contig8220.16245.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8220 9569..9721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8220.16245.1

>prot_H-paniculata_contig8220.16245.1 ID=prot_H-paniculata_contig8220.16245.1|Name=mRNA_H-paniculata_contig8220.16245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
VESDEDLPFACVICRQGFRDPIVTNCGHYFCEKCAQDHYKTDQRCAACGK
Q
back to top

mRNA from alignment at H-paniculata_contig8220:9569..9721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8220.16245.1 ID=mRNA_H-paniculata_contig8220.16245.1|Name=mRNA_H-paniculata_contig8220.16245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig8220:9569..9721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAAAGCGACGAAGACCTACCCTTCGCCTGCGTGATCTGCAGGCAAGG
GTTCCGGGACCCGATCGTGACAAATTGCGGGCACTACTTCTGCGAGAAAT
GTGCACAGGACCACTACAAGACAGATCAGCGGTGCGCGGCTTGTGGGAAA
CAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8220:9569..9721+

>mRNA_H-paniculata_contig8220.16245.1 ID=mRNA_H-paniculata_contig8220.16245.1|Name=mRNA_H-paniculata_contig8220.16245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig8220:9569..9721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAAAGCGACGAAGACCTACCCTTCGCCTGCGTGATCTGCAGGCAAGG
GTTCCGGGACCCGATCGTGACAAATTGCGGGCACTACTTCTGCGAGAAAT
GTGCACAGGACCACTACAAGACAGATCAGCGGTGCGCGGCTTGTGGGAAA
CAGGTAGAAAGCGACGAAGACCTACCCTTCGCCTGCGTGATCTGCAGGCA
AGGGTTCCGGGACCCGATCGTGACAAATTGCGGGCACTACTTCTGCGAGA
AATGTGCACAGGACCACTACAAGACAGATCAGCGGTGCGCGGCTTGTGGG
AAACAG
back to top