prot_H-paniculata_contig81850.16205.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig81850.16205.1
Unique Nameprot_H-paniculata_contig81850.16205.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length44
Homology
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.510e-13
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 MATTASG--TCFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWC 43
            M TTAS   TCF CGEKGHIRRNC ++RGKGR ++TKPAGA KWC
Sbjct:   99 MVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWC 143          
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 3.910e-11
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 0
Query:    3 TTASGTCFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 44
            T+   TCF+CGEKGHI RNC  KRGKG+ ++TKPAGAAKWCS
Sbjct:  218 TSEEPTCFDCGEKGHIWRNCSEKRGKGK-KKTKPAGAAKWCS 258          
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.190e-6
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 0
Query:    3 TTASG-TCFECGEKGHIRRNCPRKRGKGRMQRTKPAGA 39
            TT+ G TCF+CGEKGHIR +CP ++GKG  ++TKPAGA
Sbjct:  182 TTSEGPTCFDCGEKGHIRSSCPERKGKG-TKKTKPAGA 218          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI2.510e-1373.33CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KW66_9PHAE3.910e-1171.43CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JSB5_9PHAE1.190e-665.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 8..24
e-value: 0.0011
score: 28.2
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 7..23
e-value: 1.8E-6
score: 27.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 9..24
score: 10.774
NoneNo IPR availableGENE3D4.10.60.10coord: 2..37
e-value: 1.8E-9
score: 39.4
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 5..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81850contigH-paniculata_contig81850:9..140 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81850.16205.1mRNA_H-paniculata_contig81850.16205.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig81850 9..161 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig81850.16205.1 ID=prot_H-paniculata_contig81850.16205.1|Name=mRNA_H-paniculata_contig81850.16205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MATTASGTCFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf