mRNA_H-paniculata_contig81850.16205.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig81850.16205.1
Unique NamemRNA_H-paniculata_contig81850.16205.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.990e-17
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 IAGRGFAMATTASG--TCFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWC 150
            IAGRGF M TTAS   TCF CGEKGHIRRNC ++RGKGR ++TKPAGA KWC
Sbjct:   92 IAGRGFPMVTTASEQETCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWC 143
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 8.540e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 IAGRGFAMATTASG--TCFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAM  T S   TCF+CGEKGHI RNC  KRGKG+ ++TKPAGAAKWCS
Sbjct:  207 IAGRGFAMTATTSEEPTCFDCGEKGHIWRNCSEKRGKGK-KKTKPAGAAKWCS 258
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.060e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:   92 IAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 142
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.610e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:  229 IAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 279
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.840e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:   40 IAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 90
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.910e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:   92 IAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 142
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.910e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:  247 IAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 297
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.910e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:   22 IAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 72
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5K9Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y0_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:  232 IAGRGFAMATTASDIICHSCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 282
[Close]
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.920e-11
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 IAGRGFAMATTASGT-CFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS 153
            IAGRGFAMATTAS   C  C E GHIRRNCP+ + + + ++TKPAGA KWCS
Sbjct:  240 IAGRGFAMATTASDIICHRCYEPGHIRRNCPKIKNRAK-KKTKPAGATKWCS 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81850.16205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G6Q1_ECTSI5.990e-1775.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KW66_9PHAE8.540e-1573.58CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZM5_9PHAE3.060e-1165.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF66_9PHAE3.610e-1165.38CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KP59_9PHAE3.840e-1165.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZ53_9PHAE3.910e-1165.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L580_9PHAE3.910e-1165.38CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMG5_9PHAE3.910e-1165.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Y0_9PHAE3.920e-1165.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8P7_9PHAE3.920e-1165.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81850contigH-paniculata_contig81850:9..161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.4909348-CDS-H-paniculata_contig81850:8..1401622931025.4909348-CDS-H-paniculata_contig81850:8..140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81850 9..140 -
1691481555.9329615-CDS-H-paniculata_contig81850:8..1401691481555.9329615-CDS-H-paniculata_contig81850:8..140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig81850 9..140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931025.5371015-UTR-H-paniculata_contig81850:140..1611622931025.5371015-UTR-H-paniculata_contig81850:140..161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81850 141..161 -
1691481555.9415271-UTR-H-paniculata_contig81850:140..1611691481555.9415271-UTR-H-paniculata_contig81850:140..161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig81850 141..161 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81850.16205.1prot_H-paniculata_contig81850.16205.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig81850 9..140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig81850.16205.1

>prot_H-paniculata_contig81850.16205.1 ID=prot_H-paniculata_contig81850.16205.1|Name=mRNA_H-paniculata_contig81850.16205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MATTASGTCFECGEKGHIRRNCPRKRGKGRMQRTKPAGAAKWCS
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mRNA from alignment at H-paniculata_contig81850:9..161-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig81850.16205.1 ID=mRNA_H-paniculata_contig81850.16205.1|Name=mRNA_H-paniculata_contig81850.16205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig81850:9..161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGCCGGCCGCGGCTTCGCCATGGCCACAACCGCATCGGGGACCTGTTT
CGAATGCGGCGAGAAAGGACACATCCGCAGGAACTGCCCCCGAAAGAGAG
GCAAGGGAAGAATGCAGAGGACCAAGCCGGCGGGAGCCGCCAAGTGGTGC
TCC
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Coding sequence (CDS) from alignment at H-paniculata_contig81850:9..161-

>mRNA_H-paniculata_contig81850.16205.1 ID=mRNA_H-paniculata_contig81850.16205.1|Name=mRNA_H-paniculata_contig81850.16205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig81850:9..161- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCACAACCGCATCGGGGACCTGTTTCGAATGCGGCGAGAAAGGACA
CATCCGCAGGAACTGCCCCCGAAAGAGAGGCAAGGGAAGAATGCAGAGGA
CCAAGCCGGCGGGAGCCGCCAAGTGGTGCTCCATGGCCACAACCGCATCG
GGGACCTGTTTCGAATGCGGCGAGAAAGGACACATCCGCAGGAACTGCCC
CCGAAAGAGAGGCAAGGGAAGAATGCAGAGGACCAAGCCGGCGGGAGCCG
CCAAGTGGTGCTCC
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