prot_H-paniculata_contig81425.16165.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig81425.16165.1
Unique Nameprot_H-paniculata_contig81425.16165.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length174
Homology
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A151TGQ2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGQ2_CAJCA)

HSP 1 Score: 167 bits (424), Expect = 6.400e-45
Identity = 80/172 (46.51%), Postives = 116/172 (67.44%), Query Frame = 0
Query:    4 LELVHTDIAGPVDKSFEGR-HFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            LEL+HTD+ GP+     G+ ++ ++F+ D+SR   VY L++KSEV    K+F+  + K +GL IK LRSD+GG+FT K F ++C +NGI++ ++   +PQQNGVAER  R++ EM RS + +  L + +WAEA   AV+  NR+PTR  +G TP E W G  P + HLRVFG
Sbjct:  459 LELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFG 630          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF)

HSP 1 Score: 159 bits (403), Expect = 6.540e-45
Identity = 77/174 (44.25%), Postives = 111/174 (63.79%), Query Frame = 0
Query:    2 ERLELVHTDIAGPVDK-SFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            E+LEL+HTD+ GP+D  S     + I+F+ D++RM  VY +R+KSEV    K+F+  + K +G  IK LRSD+G ++T K FH FC + G+++ ++  YTPQQNGV ER  +++ EM +S M    L + +WAEA   AV+  NR PT      TP E W G  P ++HL+VFG
Sbjct:   38 EKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A151RPT4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RPT4_CAJCA)

HSP 1 Score: 167 bits (424), Expect = 6.690e-45
Identity = 80/172 (46.51%), Postives = 116/172 (67.44%), Query Frame = 0
Query:    4 LELVHTDIAGPVDKSFEGR-HFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            LEL+HTD+ GP+     G+ ++ ++F+ D+SR   VY L++KSEV    K+F+  + K +GL IK LRSD+GG+FT K F ++C +NGI++ ++   +PQQNGVAER  R++ EM RS + +  L + +WAEA   AV+  NR+PTR  +G TP E W G  P + HLRVFG
Sbjct:  525 LELIHTDVCGPIKPRSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKKFKAHVEKESGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKKLPKEFWAEAVACAVYLTNRSPTRSVSGKTPQEAWSGRKPGISHLRVFG 696          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 167 bits (422), Expect = 1.170e-44
Identity = 80/172 (46.51%), Postives = 116/172 (67.44%), Query Frame = 0
Query:    4 LELVHTDIAGPVDKSFEGR-HFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            LEL+HTDI GP+  S  G+ ++ ++F+ D+SR   VY L++KSE     K+F+  + K +GL IK +RSD+GG+FT + F  FC ++GI++ ++   +PQQNGVAER  R++ +M RS + + NL + +WAEA   AV+ LNR+PTR   G TP E W G  P + HLRVFG
Sbjct:  175 LELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFG 346          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: V9H0W6_ARATH (Lectin receptor kinase (Fragment) n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=V9H0W6_ARATH)

HSP 1 Score: 164 bits (416), Expect = 1.390e-44
Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = 0
Query:    4 LELVHTDIAGPVD-KSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            +EL+HTD+ GP+  KS    ++ ++F+ D+SR   VY L++KSEV    K+F+  + K +GL IK +RSD GG+FT K F ++C +NGI++ ++   +PQQNGVAER  R++ EM RS + +  L +  WAEA   AV+ LNR+PT+  +G TP E W G  P + HLRVFG
Sbjct:   24 VELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFG 195          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF)

HSP 1 Score: 160 bits (404), Expect = 2.220e-44
Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 0
Query:    2 ERLELVHTDIAGPVDK-SFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            E+LEL+HTDI GP+D  S     + I+F+ D++RM  VY +R+KSEV    K+F+  + K +G  IK LRSD+G ++T K FH FC + G+++ ++  YTPQQNGV ER  +++ EM +S M    L + +WAEA   AV+  NR PT      TP E W G  P ++HL+VFG
Sbjct:   38 EKLELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTMAIPNKTPFEAWSGRRPSVNHLKVFG 211          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH)

HSP 1 Score: 166 bits (419), Expect = 3.130e-44
Identity = 80/172 (46.51%), Postives = 115/172 (66.86%), Query Frame = 0
Query:    4 LELVHTDIAGPVD-KSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            LEL+HTD+ GP+  KS    ++ ++F+ D+SR   VY L++KSEV    K+F+  + K +GL IK +RSD GG+FT K F ++C +NGI++ ++   +PQQNGVAER  R++ EM RS + +  L +  WAEA   AV+ LNR+PT+  +G TP E W G  P + HLRVFG
Sbjct:  527 LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFG 698          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU)

HSP 1 Score: 166 bits (419), Expect = 3.230e-44
Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 0
Query:    2 ERLELVHTDIAGPVDKSFEG-RHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            E+LELVH DI GP+    EG + + I F+ DYSR   VY L  KS+     K F+  + K  GL IK LR+D+GG+FT   F ++C  NGIK+ ++ AYTPQQNGVAER  R+V  M RS ++  N+ R++W EA   A + LNR PT      TP E W+G  P + HLRVFG
Sbjct:  490 EKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFG 663          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E)

HSP 1 Score: 165 bits (417), Expect = 5.380e-44
Identity = 80/172 (46.51%), Postives = 116/172 (67.44%), Query Frame = 0
Query:    4 LELVHTDIAGPVD-KSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            LEL+HTD+ GP+  KS    ++ ++F+ D+SR   VY L++KSEV    K+F+  + K +GL IK +RSD+GG+FT K F ++C +NGI++ ++   +PQQNGVAER  R++ EM RS + +  L +  WAEA   AV+ LNR+PT+  +G TP E W G  P + HLRVFG
Sbjct:  526 LELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFG 697          
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A8J5HFT2_ZINOF (Integrase catalytic domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HFT2_ZINOF)

HSP 1 Score: 159 bits (403), Expect = 6.180e-44
Identity = 77/174 (44.25%), Postives = 111/174 (63.79%), Query Frame = 0
Query:    2 ERLELVHTDIAGPVDK-SFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 174
            E+LEL+HTD+ GP+D  S     + I+F+ D++RM  VY +R+KSEV    K+F+  + K +G  IK LRSD+G ++T K FH FC + G+++ ++  YTPQQNGV ER  +++ EM +S M    L + +WAEA   AV+  NR PT      TP E W G  P ++HL+VFG
Sbjct:   38 EKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151TGQ2_CAJCA6.400e-4546.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5C7R4_ZINOF6.540e-4544.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A151RPT4_CAJCA6.690e-4546.51Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F0044641.170e-4446.51DDE-type integrase/transposase/recombinase n=1 Tax... [more]
V9H0W6_ARATH1.390e-4445.93Lectin receptor kinase (Fragment) n=1 Tax=Arabidop... [more]
A0A8J5MAE0_ZINOF2.220e-4444.83Integrase catalytic domain-containing protein n=1 ... [more]
Q9M197_ARATH3.130e-4446.51Copia-type reverse transcriptase-like protein n=6 ... [more]
A0A2Z6P4L8_TRISU3.230e-4447.70Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
UPI000A29CC5E5.380e-4446.51uncharacterized protein LOC110224828 n=1 Tax=Arabi... [more]
A0A8J5HFT2_ZINOF6.180e-4444.25Integrase catalytic domain-containing protein n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 4..114
e-value: 6.2E-21
score: 74.8
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..164
score: 19.625
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..172
e-value: 4.0E-32
score: 113.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..141
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..141
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 4..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81425contigH-paniculata_contig81425:2..523 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81425.16165.1mRNA_H-paniculata_contig81425.16165.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig81425 2..523 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig81425.16165.1 ID=prot_H-paniculata_contig81425.16165.1|Name=mRNA_H-paniculata_contig81425.16165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MERLELVHTDIAGPVDKSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWA
LKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYT
PQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRP
QNGGTPCEKWHGSIPKLDHLRVFG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf