mRNA_H-paniculata_contig81425.16165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF) HSP 1 Score: 159 bits (403), Expect = 6.540e-45 Identity = 77/174 (44.25%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 4 ERLELVHTDIAGPVDK-SFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
E+LEL+HTD+ GP+D S + I+F+ D++RM VY +R+KSEV K+F+ + K +G IK LRSD+G ++T K FH FC + G+++ ++ YTPQQNGV ER +++ EM +S M L + +WAEA AV+ NR PT TP E W G P ++HL+VFG
Sbjct: 38 EKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 167 bits (422), Expect = 1.170e-44 Identity = 80/172 (46.51%), Postives = 116/172 (67.44%), Query Frame = 1
Query: 10 LELVHTDIAGPVDKSFEGR-HFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
LEL+HTDI GP+ S G+ ++ ++F+ D+SR VY L++KSE K+F+ + K +GL IK +RSD+GG+FT + F FC ++GI++ ++ +PQQNGVAER R++ +M RS + + NL + +WAEA AV+ LNR+PTR G TP E W G P + HLRVFG
Sbjct: 175 LELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFG 346
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF) HSP 1 Score: 160 bits (404), Expect = 2.220e-44 Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 4 ERLELVHTDIAGPVDK-SFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
E+LEL+HTDI GP+D S + I+F+ D++RM VY +R+KSEV K+F+ + K +G IK LRSD+G ++T K FH FC + G+++ ++ YTPQQNGV ER +++ EM +S M L + +WAEA AV+ NR PT TP E W G P ++HL+VFG
Sbjct: 38 EKLELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTMAIPNKTPFEAWSGRRPSVNHLKVFG 211
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A2Z6P4L8_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6P4L8_TRISU) HSP 1 Score: 166 bits (419), Expect = 3.230e-44 Identity = 83/174 (47.70%), Postives = 108/174 (62.07%), Query Frame = 1
Query: 4 ERLELVHTDIAGPVDKSFEG-RHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
E+LELVH DI GP+ EG + + I F+ DYSR VY L KS+ K F+ + K GL IK LR+D+GG+FT F ++C NGIK+ ++ AYTPQQNGVAER R+V M RS ++ N+ R++W EA A + LNR PT TP E W+G P + HLRVFG
Sbjct: 490 EKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFG 663
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A8J5HFT2_ZINOF (Integrase catalytic domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HFT2_ZINOF) HSP 1 Score: 159 bits (403), Expect = 6.180e-44 Identity = 77/174 (44.25%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 4 ERLELVHTDIAGPVDK-SFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
E+LEL+HTD+ GP+D S + I+F+ D++RM VY +R+KSEV K+F+ + K +G IK LRSD+G ++T K FH FC + G+++ ++ YTPQQNGV ER +++ EM +S M L + +WAEA AV+ NR PT TP E W G P ++HL+VFG
Sbjct: 38 EKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 164 bits (416), Expect = 7.890e-44 Identity = 82/172 (47.67%), Postives = 112/172 (65.12%), Query Frame = 1
Query: 10 LELVHTDIAGPVD-KSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
LE+VHTDIAGP D S G + + F+ D+SR +Y L++KSE L LK+F+ K +G +K LRSD+GG++T K+F +FC E+GI ++A YTPQQNGVAER R++ +M RS + L R +WAEA R AV+ LNR PT+ TP E W G P + H ++FG
Sbjct: 390 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFG 561
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY) HSP 1 Score: 164 bits (416), Expect = 8.210e-44 Identity = 82/172 (47.67%), Postives = 113/172 (65.70%), Query Frame = 1
Query: 10 LELVHTDIAGPVD-KSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
LE+VHTDIAGP D S G + + F+ D+SR +Y L++KSE L L++F+ K +G +K LRSD+GG++T K+F +FC E+GI ++A YTPQQNGVAER R++ +M RS + L R +WAEA R AV+ LNR PT+ TP E W G P + HL++FG
Sbjct: 389 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFG 560
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR) HSP 1 Score: 164 bits (414), Expect = 1.420e-43 Identity = 84/174 (48.28%), Postives = 108/174 (62.07%), Query Frame = 1
Query: 4 ERLELVHTDIAGPVDKSFEG-RHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
E+LELVH DI GP+ EG + + I F+ DYSR VY L KS+ K F+ + K L IK LR+D+GG+FT F ++C NGIK+ ++AAYTPQQNGVAER R+V M RS ++ N+ R++WAEA A + LNR PT TP E W G P + HLRVFG
Sbjct: 186 EKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLRVFG 359
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 163 bits (412), Expect = 2.820e-43 Identity = 81/172 (47.09%), Postives = 112/172 (65.12%), Query Frame = 1
Query: 10 LELVHTDIAGPVD-KSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
LE+VHTDIAGP D S G + + F+ D+SR +Y L++KSE L L++F+ K +G +K LRSD+GG++T K+F +FC E+GI ++ YTPQQNGVAER R++ +M RS + L R +WAEA R AV+ LNR PT+ TP E W G P + HL++FG
Sbjct: 1311 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFG 1482
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Match: A0A151TPH7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TPH7_CAJCA) HSP 1 Score: 157 bits (396), Expect = 3.530e-43 Identity = 79/172 (45.93%), Postives = 108/172 (62.79%), Query Frame = 1
Query: 10 LELVHTDIAGPV-DKSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWALKQFERDIAKANGLQIKRLRSDQGGQFTGKVFHQFCAENGIKKNVSAAYTPQQNGVAERSWRSVFEMTRSKMITANLGRRYWAEAARAAVHCLNRAPTRPQNGGTPCEKWHGSIPKLDHLRVFG 522
LEL+HTDI GP+ S + I+F+ D+SRM VY +++KSEV LK+F+ + K +G QIK LRSD+G ++T F +FC + GI++ ++ +Y+PQQNGV+ER R+V EM RS + L +WAE AV+ LNR PTR T E W G P HLRVFG
Sbjct: 97 LELIHTDICGPMRTSSLHNNRYFILFIDDFSRMTWVYFIKEKSEVFGILKKFKTLVEKQSGKQIKVLRSDRGKEYTSHEFDKFCEDEGIEQKLTVSYSPQQNGVSERKNRTVMEMARSMLKEKGLPNTFWAEVVYTAVYILNRCPTRTVQDKTLIEAWSGKKPSTKHLRVFG 268 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81425.16165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig81425.16165.1 >prot_H-paniculata_contig81425.16165.1 ID=prot_H-paniculata_contig81425.16165.1|Name=mRNA_H-paniculata_contig81425.16165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp MERLELVHTDIAGPVDKSFEGRHFAIIFVHDYSRMRKVYALRKKSEVLWAback to top mRNA from alignment at H-paniculata_contig81425:2..523+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig81425.16165.1 ID=mRNA_H-paniculata_contig81425.16165.1|Name=mRNA_H-paniculata_contig81425.16165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at H-paniculata_contig81425:2..523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig81425:2..523+ >mRNA_H-paniculata_contig81425.16165.1 ID=mRNA_H-paniculata_contig81425.16165.1|Name=mRNA_H-paniculata_contig81425.16165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig81425:2..523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |