prot_H-paniculata_contig8.16022.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8.16022.1
Unique Name	prot_H-paniculata_contig8.16022.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	460

Homology

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BLAST of mRNA_H-paniculata_contig8.16022.1 vs. uniprot
Match: A0A6H5KL52_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL52_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 6.120e-58
Identity = 175/432 (40.51%), Postives = 230/432 (53.24%), Query Frame = 0

Query:    3 SEGARAGRAQPEAELLAT--GSETPRVKLAVTNVYDNSTIEEVMLEATDTILQLKVVLQNSLPDHPSPLRQRLIFRGKQC-EEGQQLWDVLQGVDLAARQTFHLVVTQPTAAN--AGAATA--LGQPSREAMWPPDASVTTTRSIGAGVAEASVAGVSGPADASPE--------AAAQPERVQLSSNQMVQLQWQYQQALREQXXXXXXXXXXYQHLAWQCMALAQQNG-RAPSSGAPWSSVQHPLCQVPSQWPATESFEVASSTATRALGGSMPGPTFGGAVHDITHPAP-GMIQEAGLAGEDGRPAGQNAVDPPPVAAPV-RVNRG--RLLMQLCALVFVFGAEAEEWQLLLLGLGAGLVFLYKTGVLAILLGEGREGGGLWKTVCTFATVIPENKGRLTDLGVFTFALFASLFPPWKPTRSPAVIAAEA 414
            S+   AGR+ PEAE++A   GS+   VKL VT+VY  S+ +   LE T TI  LK +LQ +    P+P +QRLIFRGKQC EE QQL  +++G+DL+ +   HL+V+QP      AG +TA     P+ +    P                +S A  + P D +          +  +PE VQLS  Q+ QLQ          XXXXXX    +  L+ Q  AL QQ   R  +  A +SS                + EV++  ATRALGG+MPGP  GG V D+T   P G I  AGL G++G     N VDP P A  + R  R   +++ Q   ++ VFG +A+ W L LL LG    FL++TG+L  +LG GREGGGLWK +CT ATVI E  G L D   F  A F SLFP W+P RSP  IA +A
Sbjct:   10 SDARAAGRSHPEAEMIAAARGSDGTPVKLFVTDVYHRSS-KVFSLETTITIGDLKRLLQEAFVSRPAPQQQRLIFRGKQCKEETQQLGHIMRGLDLSGQHNMHLIVSQPVEQELPAGGSTADVARTPTAQQSSLPQQRPXXXXXXXXXSLRSSSASPAAPHDTAXXXXXXXXXXSNERPECVQLSQTQLEQLQRXXXXXXXXXXXXXXXHRQRFNFLSAQSRALTQQRQYRHRTPTATYSSPXXXXXXXXXXXXXXYT-EVSARAATRALGGNMPGPAGGGGVRDVTGAPPEGHIPAAGL-GQEGEVWRGNLVDPAPNAPDIGREARSWLKMVFQCMGVILVFGIDADGWVLALLALGGLFAFLFRTGLLKEILGSGREGGGLWKKLCTGATVITEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAIAVQA 438

[Close]

BLAST of mRNA_H-paniculata_contig8.16022.1 vs. uniprot
Match: D7G6U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U9_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.340e-21
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0

Query:  314 LLMQLCALVFVFGAEAEEWQLLLLGLGAGLVFLYKTGVLAILLGEGREGGGLWKTVCTFATVIPENKGRLTDLGVFTFALFASLFPPWKPTRSPAVI 410
            ++ Q   ++ VFG +A  W L LL LG    FL++TG+L  +LG GREGGGLWK +CT ATVI E  G L D   F  A F SLFP W+P RSP  I
Sbjct:    1 MVFQCMGVILVFGIDANGWVLALLALGGLFAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVIMEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAI 97

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8.16022.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8.16022.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KL52_9PHAE	6.120e-58	40.51	Ubiquitin-like domain-containing protein n=1 Tax=E...	[more]
D7G6U9_ECTSI	1.340e-21	51.55	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 425..445
None	No IPR available	COILS	Coil	Coil	coord: 176..207
None	No IPR available	GENE3D	3.10.20.90		coord: 21..113 e-value: 3.7E-15 score: 57.4
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 335..357
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 314..329
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 358..459
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..313
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 330..334
IPR039751	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 /2	PANTHER	PTHR12943	FAMILY NOT NAMED	coord: 42..448
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 27..110 score: 9.961
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 23..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8	contig	H-paniculata_contig8:73508..76424 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8.16022.1	mRNA_H-paniculata_contig8.16022.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8 73146..76989 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8.16022.1 ID=prot_H-paniculata_contig8.16022.1|Name=mRNA_H-paniculata_contig8.16022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=460bp
MVSEGARAGRAQPEAELLATGSETPRVKLAVTNVYDNSTIEEVMLEATDT
ILQLKVVLQNSLPDHPSPLRQRLIFRGKQCEEGQQLWDVLQGVDLAARQT
FHLVVTQPTAANAGAATALGQPSREAMWPPDASVTTTRSIGAGVAEASVA
GVSGPADASPEAAAQPERVQLSSNQMVQLQWQYQQALREQQQALQQQQQR
YQHLAWQCMALAQQNGRAPSSGAPWSSVQHPLCQVPSQWPATESFEVASS
TATRALGGSMPGPTFGGAVHDITHPAPGMIQEAGLAGEDGRPAGQNAVDP
PPVAAPVRVNRGRLLMQLCALVFVFGAEAEEWQLLLLGLGAGLVFLYKTG
VLAILLGEGREGGGLWKTVCTFATVIPENKGRLTDLGVFTFALFASLFPP
WKPTRSPAVIAAEAAAREAAAAAAAEAANQRAEDAAAARARASDAARAEV
VQPAAIGVD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039751	HERPUD1/2
IPR000626	Ubiquitin_dom
IPR029071	Ubiquitin-like_domsf