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Homology
BLAST of mRNA_H-paniculata_contig8.16022.1 vs. uniprot
Match: A0A6H5KL52_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL52_9PHAE) HSP 1 Score: 211 bits (538), Expect = 3.540e-56 Identity = 177/436 (40.60%), Postives = 232/436 (53.21%), Query Frame = 3
Query: 357 TAMVSEGARAGRAQPEAELLAT--GSETPRVKLAVTNVYDNSTIEEVMLEATDTILQLKVVLQNSLPDHPSPLRQRLIFRGKQC-EEGQQLWDVLQGVDLAARQTFHLVVTQPTAAN--AGAATA--LGQPSREAMWPPDASVTTTRSIGAGVAEASVAGVSGPADASPE--------AAAQPERVQLSSNQMVQLQWQYQQALREQXXXXXXXXXXYQHLAWQCMALAQQNG-RAPSSGAPWSSVQHPLCQVPSQWPATESFEVASSTATRALGGSMPGPTFGGAVHDITHPAP-GMIQEAGLAGEDGRPAGQNAVDPPPVAAPV-RVNRG--RLLMQLCALVFVFGAEAEEWQLLLLGLGAGLVFLYKTGVLAILLGEGREGGGLWKTVCTFATVIPENKGRLTDLGVFTFALFASLFPPWKPTRSPAVIAAEA 1604
TA S+ AGR+ PEAE++A GS+ VKL VT+VY S+ + LE T TI LK +LQ + P+P +QRLIFRGKQC EE QQL +++G+DL+ + HL+V+QP AG +TA P+ + P +S A + P D + + +PE VQLS Q+ QLQ XXXXXX + L+ Q AL QQ R + A +SS + EV++ ATRALGG+MPGP GG V D+T P G I AGL G++G N VDP P A + R R +++ Q ++ VFG +A+ W L LL LG FL++TG+L +LG GREGGGLWK +CT ATVI E G L D F A F SLFP W+P RSP IA +A
Sbjct: 6 TAGESDARAAGRSHPEAEMIAAARGSDGTPVKLFVTDVYHRSS-KVFSLETTITIGDLKRLLQEAFVSRPAPQQQRLIFRGKQCKEETQQLGHIMRGLDLSGQHNMHLIVSQPVEQELPAGGSTADVARTPTAQQSSLPQQRPXXXXXXXXXSLRSSSASPAAPHDTAXXXXXXXXXXSNERPECVQLSQTQLEQLQRXXXXXXXXXXXXXXXHRQRFNFLSAQSRALTQQRQYRHRTPTATYSSPXXXXXXXXXXXXXXYT-EVSARAATRALGGNMPGPAGGGGVRDVTGAPPEGHIPAAGL-GQEGEVWRGNLVDPAPNAPDIGREARSWLKMVFQCMGVILVFGIDADGWVLALLALGGLFAFLFRTGLLKEILGSGREGGGLWKKLCTGATVITEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAIAVQA 438
BLAST of mRNA_H-paniculata_contig8.16022.1 vs. uniprot
Match: D7G6U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U9_ECTSI) HSP 1 Score: 101 bits (252), Expect = 3.940e-21 Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 3
Query: 1302 LLMQLCALVFVFGAEAEEWQLLLLGLGAGLVFLYKTGVLAILLGEGREGGGLWKTVCTFATVIPENKGRLTDLGVFTFALFASLFPPWKPTRSPAVI 1592
++ Q ++ VFG +A W L LL LG FL++TG+L +LG GREGGGLWK +CT ATVI E G L D F A F SLFP W+P RSP I
Sbjct: 1 MVFQCMGVILVFGIDANGWVLALLALGGLFAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVIMEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAI 97
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 75.9 |
| Seed ortholog evalue | 5.6e-11 |
| Seed eggNOG ortholog | 157072.XP_008867238.1 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2CXND@1,2RYPT@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 2307 |
| Cds size | 1380 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8.16022.1 >prot_H-paniculata_contig8.16022.1 ID=prot_H-paniculata_contig8.16022.1|Name=mRNA_H-paniculata_contig8.16022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=460bp
MVSEGARAGRAQPEAELLATGSETPRVKLAVTNVYDNSTIEEVMLEATDT ILQLKVVLQNSLPDHPSPLRQRLIFRGKQCEEGQQLWDVLQGVDLAARQT FHLVVTQPTAANAGAATALGQPSREAMWPPDASVTTTRSIGAGVAEASVA GVSGPADASPEAAAQPERVQLSSNQMVQLQWQYQQALREQQQALQQQQQR YQHLAWQCMALAQQNGRAPSSGAPWSSVQHPLCQVPSQWPATESFEVASS TATRALGGSMPGPTFGGAVHDITHPAPGMIQEAGLAGEDGRPAGQNAVDP PPVAAPVRVNRGRLLMQLCALVFVFGAEAEEWQLLLLGLGAGLVFLYKTG VLAILLGEGREGGGLWKTVCTFATVIPENKGRLTDLGVFTFALFASLFPP WKPTRSPAVIAAEAAAREAAAAAAAEAANQRAEDAAAARARASDAARAEV VQPAAIGVD* back to topmRNA from alignment at H-paniculata_contig8:73146..76989+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8.16022.1 ID=mRNA_H-paniculata_contig8.16022.1|Name=mRNA_H-paniculata_contig8.16022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3844bp|location=Sequence derived from alignment at H-paniculata_contig8:73146..76989+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGACGAATGTTGATTTGTCCACGAAGCAGACAGTTCTTTGGGCTCCCTTA
AGACCCCCCCAGACAGATACTGTAAGTGAAGCGGGATTAGGAGAAAGGAG
AGATATTCCCCTTCACCAAGATTAATTAAGCGTCGGTGCCTTATTCTTCC
AATCGTCTACGACACATATGATCGGTAATTGAAGAATATAGAGCTAGCTC
ACATAGAACGTGTAACCGCTGTATAGGTATTCTCGTACAACGGTTCCAGT
GAACTGTAGTTCACTGTTCACTTCTTTTCTTGGCCAGCCGAGGACGGAAA
GGTAGGGCATCTCACTGTGGTTCGGGGGAAGCACACCGTGGTTTCTTGTT
GGGATTACTGCTATGGTTTCGGAAGGTGCGAGGGCGGGTCGTGCGCAGCC
AGAAGCGGAGCTTCTGGCAACTGGGAGTGAAACTCCTCGGGTAAAGCTGG
CGGTGACGAATGTTTACGATAATTCTACAATCGAGGAGGTGATGCTGGAG
GCTACGGACACAATCCTGCAGCTCAAGGTGGTGCTGCAAAATTCACTTCC
GGACCATCCTTCCCCTCTCCGACAGAGACTTATATTTCGCGGAAAGCAAT
GCGAGGAAGGGCAGCAACTGTGGGATGTTTTACAAGGGGTAAGAGACGTG
CCTTCGGACGCCTAGTATTGTGGCGGTTGCACGTGTCAAGCTCAAACGCC
CGATTTCGCTCTTCGCGTAGTGGACGCACGGGATGGAAATATCGACTCAA
ATCGTGTCGTGTCTCATTTTTACAGTATGTAACTGGATTATGTACCACCT
ACAGCACGTAAATACTGCTGTCTGTGAATAAGTAGTATAGTGGCTGATGT
ATTTGAGCTGTTACCCCACCCCGCCTCTTGGGTACATGGACCCCGTCCTC
CGTTGGCAGTCACGCCAGCTTTTACAGGCAGGTGGTGGCCGGCTTCAGTA
TTTATTCACAGGTTTCACGAAGTGTAGCGGTTTTGACTTCAAGCCACAGG
TTAGGGTGCTGCATAAAGTAATCGGCCAGTATATGGTAGAGCCAAAGCTA
CATCATACCACCACTTACAACGACCCATTCCACTGGCAGTGGCTCGCGAT
GCTAGTGAGGAATGTAGTCACAATGACAGCGAAGATTCGTCCATCTAGTT
ACTTAGGTGAAGATTTGTAAAACTGTTCCGAAACGACCCTCACAATTGTT
TGACATCCGGACACAGTGTTGCAGTCGGTATAAATCGAGAAAACAAATCT
CCCCATCACGGAAGGCGTTCGGATGGTATGGGGTGAGGGGACGCAATTGT
TAGTCATTGTCCATAGGTATTGCTGAAAACGGTGAGCCAGGCTGAAGTAC
TCACAATACCAGGGCATTAGAAGATGGATGTAAAGAGCTTCCAGGCCGTC
CATTTGAATAAGTTGTGCTGCTGTGCAATGTATCCAGCCCTATTTGCACG
GACCTAAACATGGCTCTACGTGCACTGGGAGTATTTTGCACACATGACAG
TGAAATTCCACTCACCCTTGTCTGCCTTTTTATTTCTCTCCAACCTCGAC
TACATCTCCTCTCACTACGATTCCTGCTGGTTCGATCAGGTGGATCTGGC
TGCGAGACAGACGTTTCACCTAGTCGTAACACAGCCGACGGCGGCTAACG
CTGGGGCCGCGACCGCGCTCGGACAGCCTTCACGCGAAGCGATGTGGCCA
CCGGATGCCAGCGTTACAACCACCCGCAGTATTGGCGCTGGAGTAGCAGA
GGCCTCAGTAGCTGGAGTGAGTGGACCTGCCGACGCCTCGCCTGAAGCGG
CCGCCCAACCCGAGCGCGTGCAGCTGTCGTCTAATCAGATGGTACAGCTG
CAGTGGCAGTACCAGCAGGCTTTGCGAGAGCAGCAACAAGCGTTACAGCA
GCAACAACAACGTTATCAGCATCTCGCCTGGCAATGCATGGCACTTGCAC
AACAAAACGGACGAGCCCCGAGCTCCGGCGCCCCGTGGTCTAGTGTGCAA
CACCCGTTGTGCCAGGTTCCTTCCCAGTGGCCCGCAACGGAAAGTTTCGA
AGTCGCGTCGTCGACAGCAACACGGGCGTTGGGGGGCAGTATGCCTGGGC
CAACCTTTGGCGGTGCAGTGCATGACATAACGCACCCAGCTCCCGGAATG
ATTCAGGAAGCGGGGCTTGCTGGTGAAGACGGCCGACCAGCAGGACAGAA
CGCAGTAGACCCCCCTCCTGTAGCAGCACCTGTTCGTGTGAATCGAGGGA
GACTTTTGATGCAACTGTGTGCTCTTGTGTTCGTGTTCGGGGCGGAAGCG
GAAGAGTGGCAACTGTTGCTGTTGGGGCTCGGAGCGGGGTTGGTGTTTCT
GTACAAGACGGGCGTCCTGGCGATTCTCTTGGGGGAAGGACGAGAAGGCG
GGGGGCTTTGGAAGACGGTCTGTACTTTTGCGACCGTGATCCCTGAGAAC
AAAGGCCGCTTGACGGATCTAGGGGTCTTTACGTTTGCCTTGTTCGCCAG
CCTGTTCCCTCCGTGAGTGTATATATTAATGTTAGGTATCTGTGACACGA
TACACAGCGACGTCTTTTCACTCGTTACGCTCGCAGTGCGGGCGTGTAGG
TATATGTCGCAATGAAGACGTGTTGACTTGCCCTATGCGTGTTTCGCCCA
TCGTCCAACAGCATGTTACTTACAGTTCAAGTTGATGTTGAGATATCCTG
TATGCTCCATGGCCTGTTTGTACACTTGCGGTCTTGGGTGTGCGACTCAT
TGGTGACAAGTTATTGCGACGCCAAGCGAGGACAGCCAACGTTACCGCCT
ATGACCCATGGCCCCGTGCTTCTCGTGCGTAGCTTTTTTTAGTAATGTTG
CATGCTGCAGCTCTAATGATTCACATAGGAGGCGTTGTTGGGAGAATTGG
TACATACTGGTGCGCTTTGGCTCCAAGGCCACTTGTGTGGGCAGTGCGGA
TTGTGCTCCCGGCGAAAAGTCACGTCCAATTTTTGAAAACACATTTTTTT
GTTTTTTTGTAGGCCGCATGTTGGTCTGTGGTGCCCTTGCTCATGCGATA
GACCAATCCCGCTTTATTAAAACCGAATTTTTGTGTCTCTACATTCAGGT
GGAAGCCCACGCGATCTCCCGCTGTAATTGCGGCAGAAGCTGCTGCGCGA
GAGGCGGCGGCCGCGGCAGCAGCTGAAGCAGCCAATCAGAGGGCAGAAGA
TGCCGCTGCGGCCCGCGCACGGGCGTCTGACGCTGCCCGGGCAGAGGTGG
TGCAGCCGGCAGCAATCGGGGTGGATTGATTGAAAGATCAGAGCCAGGCG
TCGTGGCGACTCTTGTTCTGGCGCGTAGTGTATGAGATTTGCGACAGTAA
AGAGGTGTTAACGAACAGTGCTGCACATAGTGGCTTCATAACGTGCAAAC
AGCAGTTTTGTAGAGAAGCAGAGGCGCCGGTTTTTCCCGCAAGTATGTAC
CCTGTCAATCCGATTACTTTGCGGACAAAACAGCGAGTAAGTGTTGCCTT
CTCGAGGTGTGCTGTTTACAGAGTTGCGTTCGTGTGAGAGCTAATCGTGA
ACCCCAGACATGATGTCTGACAGAGTAATCAGCGAGCACACGCTGTCGCT
GACTTGTAAATATGAAATGTACGGCTGAGACTTGTTGCATATCTTCAGCT
GGCTCTTAGTAGGTATTGTTGGTGTTTACCAGGTCACAAGTTCACAAGAT
AGTGAGAAATTAAATGAGAATTATAAACAAATGTCGATACTGTATACCAC
CGGCACGATTCGGAAGTTTGAGGAAGCAGGACTTCCACGCGCTGTTTCGC
ATCAAGTGGCTTGATGAAGTAGTGTACACTATTTATTATGTGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig8:73146..76989+ >mRNA_H-paniculata_contig8.16022.1 ID=mRNA_H-paniculata_contig8.16022.1|Name=mRNA_H-paniculata_contig8.16022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2760bp|location=Sequence derived from alignment at H-paniculata_contig8:73146..76989+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGTTTCGGAAGGTGCGAGGGCGGGTCGTGCGCAGCCAGAAGCGGAGCT TCTGGCAACTGGGAGTGAAACTCCTCGGGTAAAGCTGGCGGTGACGAATG TTTACGATAATTCTACAATCGAGGAGGTGATGCTGGAGGCTACGGACACA ATCCTGCAGCTCAAGGTGGTGCTGCAAAATTCACTTCCGGACCATCCTTC CCCTCTCCGACAGAGACTTATATTTCGCGGAAAGCAATGCGAGGAAGGGC AGCAACTGTGGGATGTTTTACAAGGGATGGTTTCGGAAGGTGCGAGGGCG GGTCGTGCGCAGCCAGAAGCGGAGCTTCTGGCAACTGGGAGTGAAACTCC TCGGGTAAAGCTGGCGGTGACGAATGTTTACGATAATTCTACAATCGAGG AGGTGATGCTGGAGGCTACGGACACAATCCTGCAGCTCAAGGTGGTGCTG CAAAATTCACTTCCGGACCATCCTTCCCCTCTCCGACAGAGACTTATATT TCGCGGAAAGCAATGCGAGGAAGGGCAGCAACTGTGGGATGTTTTACAAG GGGTGGATCTGGCTGCGAGACAGACGTTTCACCTAGTCGTAACACAGCCG ACGGCGGCTAACGCTGGGGCCGCGACCGCGCTCGGACAGCCTTCACGCGA AGCGATGTGGCCACCGGATGCCAGCGTTACAACCACCCGCAGTATTGGCG CTGGAGTAGCAGAGGCCTCAGTAGCTGGAGTGAGTGGACCTGCCGACGCC TCGCCTGAAGCGGCCGCCCAACCCGAGCGCGTGCAGCTGTCGTCTAATCA GATGGTACAGCTGCAGTGGCAGTACCAGCAGGCTTTGCGAGAGCAGCAAC AAGCGTTACAGCAGCAACAACAACGTTATCAGCATCTCGCCTGGCAATGC ATGGCACTTGCACAACAAAACGGACGAGCCCCGAGCTCCGGCGCCCCGTG GTCTAGTGTGCAACACCCGTTGTGCCAGGTTCCTTCCCAGTGGCCCGCAA CGGAAAGTTTCGAAGTCGCGTCGTCGACAGCAACACGGGCGTTGGGGGGC AGTATGCCTGGGCCAACCTTTGGCGGTGCAGTGCATGACATAACGCACCC AGCTCCCGGAATGATTCAGGAAGCGGGGCTTGCTGGTGAAGACGGCCGAC CAGCAGGACAGAACGCAGTAGACCCCCCTCCTGTAGCAGCACCTGTTCGT GTGAATCGAGGGAGACTTTTGATGCAACTGTGTGCTCTTGTGTTCGTGTT CGGGGCGGAAGCGGAAGAGTGGCAACTGTTGCTGTTGGGGCTCGGAGCGG GGTTGGTGTTTCTGTACAAGACGGGCGTCCTGGCGATTCTCTTGGGGGAA GGACGAGAAGGCGGGGGGCTTTGGAAGACGGTCTGTACTTTTGCGACCGT GATCCCTGAGAACAAAGGCCGCTTGACGGATCTAGGGGTCTTTACGTTTG CCTTGTTCGCCAGCCTGTTCCCTCCGTGGATCTGGCTGCGAGACAGACGT TTCACCTAGTCGTAACACAGCCGACGGCGGCTAACGCTGGGGCCGCGACC GCGCTCGGACAGCCTTCACGCGAAGCGATGTGGCCACCGGATGCCAGCGT TACAACCACCCGCAGTATTGGCGCTGGAGTAGCAGAGGCCTCAGTAGCTG GAGTGAGTGGACCTGCCGACGCCTCGCCTGAAGCGGCCGCCCAACCCGAG CGCGTGCAGCTGTCGTCTAATCAGATGGTACAGCTGCAGTGGCAGTACCA GCAGGCTTTGCGAGAGCAGCAACAAGCGTTACAGCAGCAACAACAACGTT ATCAGCATCTCGCCTGGCAATGCATGGCACTTGCACAACAAAACGGACGA GCCCCGAGCTCCGGCGCCCCGTGGTCTAGTGTGCAACACCCGTTGTGCCA GGTTCCTTCCCAGTGGCCCGCAACGGAAAGTTTCGAAGTCGCGTCGTCGA CAGCAACACGGGCGTTGGGGGGCAGTATGCCTGGGCCAACCTTTGGCGGT GCAGTGCATGACATAACGCACCCAGCTCCCGGAATGATTCAGGAAGCGGG GCTTGCTGGTGAAGACGGCCGACCAGCAGGACAGAACGCAGTAGACCCCC CTCCTGTAGCAGCACCTGTTCGTGTGAATCGAGGGAGACTTTTGATGCAA CTGTGTGCTCTTGTGTTCGTGTTCGGGGCGGAAGCGGAAGAGTGGCAACT GTTGCTGTTGGGGCTCGGAGCGGGGTTGGTGTTTCTGTACAAGACGGGCG TCCTGGCGATTCTCTTGGGGGAAGGACGAGAAGGCGGGGGGCTTTGGAAG ACGGTCTGTACTTTTGCGACCGTGATCCCTGAGAACAAAGGCCGCTTGAC GGATCTAGGGGTCTTTACGTTTGCCTTGTTCGCCAGCCTGTTCCCTCCGT GGAAGCCCACGCGATCTCCCGCTGTAATTGCGGCAGAAGCTGCTGCGCGA GAGGCGGCGGCCGCGGCAGCAGCTGAAGCAGCCAATCAGAGGGCAGAAGA TGCCGCTGCGGCCCGCGCACGGGCGTCTGACGCTGCCCGGGCAGAGGTGG TGCAGCCGGCAGCAATCGGGGTGGATTGAGTGGAAGCCCACGCGATCTCC CGCTGTAATTGCGGCAGAAGCTGCTGCGCGAGAGGCGGCGGCCGCGGCAG CAGCTGAAGCAGCCAATCAGAGGGCAGAAGATGCCGCTGCGGCCCGCGCA CGGGCGTCTGACGCTGCCCGGGCAGAGGTGGTGCAGCCGGCAGCAATCGG GGTGGATTGA back to top
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