prot_H-paniculata_contig7923.15952.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7923.15952.1
Unique Nameprot_H-paniculata_contig7923.15952.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length440
Homology
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BLAST of mRNA_H-paniculata_contig7923.15952.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.210e-15
Identity = 96/257 (37.35%), Postives = 117/257 (45.53%), Query Frame = 0 
Query:   61 LDSMLPDLQLENWRNIDTHRGANNSSTSRS--PVRDNSGVTGQSPLANVYSARQENGSRDESVTGA--AEFSSEIVPPMGTIGAA-HSDGFSGDSDDILGISGMPPRTAFLTREEQSEDSRLLQQILKESEEEIAASIADRTKEGGVVGTNGKPGAGGSSIKTEFLPSGAAGGGTGSRGEGSTGDLYGVESLLAEFGDGRYSAGGXXXXXXXDALQSLDVDRIIESMELEAAGEDPDKVAAVATAASNSSVGVVPWR 312
            + ++ P  +LE WR  D   G   + TS +  PV      T  +  A    + +  G  D S  G   AE      P  G  G++ + DG +G       +SG PPRTAFL+R+E SEDSRLLQQIL+ESEEEIAAS+ADR    G     G             L S   G G+         DLYG                        D LQSLDVD+IIESMELEA GED D    V   A     G+ PWR
Sbjct:    1 MSNVSPSRELERWR--DDGGGGRGAGTSANLPPVASQGSAT--AAAAGGLLSPRSFGGEDTSTKGGRGAESVGYSDPYSGGGGSSTYGDGNNGS------LSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASVADRANGFGA----GXXXXXXXXXAMTRLVSSVGGAGS---------DLYGAAD---------------------DNLQSLDVDKIIESMELEA-GEDDD----VTGRAGGGGSGMTPWR 208
[Close]
BLAST of mRNA_H-paniculata_contig7923.15952.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.310e-10
Identity = 69/174 (39.66%), Postives = 79/174 (45.40%), Query Frame = 0 
Query:  156 ISGMPPRTAFLTREEQSEDSRLLQQILKESEEEIAASIADRTKEGGVVGTNGKPGAGGSSIKTEFLPSGAAGGGTGSRGEGSTGDLYGVESLLAEFGDGRYSAGGXXXXXXXDALQSLDVDRIIESMELEAAGEDPDKVAAVATAASNSSVGVVPWRTRRRSFATGSSNVSGGG 329
            +SG PPRTAFL+R+E SEDSRLLQQIL+ESEEEIAAS                      ++       G AG            DLYG                        D LQSLDVD+IIESMELEA GED D    V   A     G+ PWR           +V+GGG
Sbjct:   99 LSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASXXXXXXXXXXXXXXXXXXXXXXAMTRLVSSVGGAGS-----------DLYGAAD---------------------DNLQSLDVDKIIESMELEA-GEDDD----VTGRAGGGGSGMTPWRA----------SVAGGG 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7923.15952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE1.210e-1537.35Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI1.310e-1039.66Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7923contigH-paniculata_contig7923:7625..10237 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7923.15952.1mRNA_H-paniculata_contig7923.15952.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7923 7331..10237 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7923.15952.1 ID=prot_H-paniculata_contig7923.15952.1|Name=mRNA_H-paniculata_contig7923.15952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=440bp
MDQDVEAILNASESEEDDTLNVQGVSLEDILREDDGGDDSRDGNAYFGAG
GGAIGTEAGHLDSMLPDLQLENWRNIDTHRGANNSSTSRSPVRDNSGVTG
QSPLANVYSARQENGSRDESVTGAAEFSSEIVPPMGTIGAAHSDGFSGDS
DDILGISGMPPRTAFLTREEQSEDSRLLQQILKESEEEIAASIADRTKEG
GVVGTNGKPGAGGSSIKTEFLPSGAAGGGTGSRGEGSTGDLYGVESLLAE
FGDGRYSAGGGAGGDDDDALQSLDVDRIIESMELEAAGEDPDKVAAVATA
ASNSSVGVVPWRTRRRSFATGSSNVSGGGGVINDGRSSADRRELTGLASA
AAGANLSSVSATATDTDNAVAGRPRRGSTAEPLPVSPKSAGAAARSSRGM
EGEEAGTASRARRKGGPGERVSLGSVSMVAVGDGKGVNGR
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