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Homology
BLAST of mRNA_H-paniculata_contig7923.15952.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.750e-15 Identity = 96/257 (37.35%), Postives = 117/257 (45.53%), Query Frame = 1
Query: 475 LDSMLPDLQLENWRNIDTHRGANNSSTSRS--PVRDNSGVTGQSPLANVYSARQENGSRDESVTGA--AEFSSEIVPPMGTIGAA-HSDGFSGDSDDILGISGMPPRTAFLTREEQSEDSRLLQQILKESEEEIAASIADRTKEGGVVGTNGKPGAGGSSIKTEFLPSGAAGGGTGSRGEGSTGDLYGVESLLAEFGDGRYSAGGXXXXXXXDALQSLDVDRIIESMELEAAGEDPDKVAAVATAASNSSVGVVPWR 1230
+ ++ P +LE WR D G + TS + PV T + A + + G D S G AE P G G++ + DG +G +SG PPRTAFL+R+E SEDSRLLQQIL+ESEEEIAAS+ADR G G L S G G+ DLYG D LQSLDVD+IIESMELEA GED D V A G+ PWR
Sbjct: 1 MSNVSPSRELERWR--DDGGGGRGAGTSANLPPVASQGSAT--AAAAGGLLSPRSFGGEDTSTKGGRGAESVGYSDPYSGGGGSSTYGDGNNGS------LSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASVADRANGFGA----GXXXXXXXXXAMTRLVSSVGGAGS---------DLYGAAD---------------------DNLQSLDVDKIIESMELEA-GEDDD----VTGRAGGGGSGMTPWR 208
BLAST of mRNA_H-paniculata_contig7923.15952.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.300e-10 Identity = 69/174 (39.66%), Postives = 79/174 (45.40%), Query Frame = 1
Query: 760 ISGMPPRTAFLTREEQSEDSRLLQQILKESEEEIAASIADRTKEGGVVGTNGKPGAGGSSIKTEFLPSGAAGGGTGSRGEGSTGDLYGVESLLAEFGDGRYSAGGXXXXXXXDALQSLDVDRIIESMELEAAGEDPDKVAAVATAASNSSVGVVPWRTRRRSFATGSSNVSGGG 1281
+SG PPRTAFL+R+E SEDSRLLQQIL+ESEEEIAAS ++ G AG DLYG D LQSLDVD+IIESMELEA GED D V A G+ PWR +V+GGG
Sbjct: 99 LSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASXXXXXXXXXXXXXXXXXXXXXXAMTRLVSSVGGAGS-----------DLYGAAD---------------------DNLQSLDVDKIIESMELEA-GEDDD----VTGRAGGGGSGMTPWRA----------SVAGGG 225
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 79.7 |
| Seed ortholog evalue | 3.7e-12 |
| Seed eggNOG ortholog | 2880.D8LRX0 |
| KEGG ko | ko:K20178 |
| KEGG Pathway | ko04138,map04138 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0006810,GO:0006886,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0008270,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016050,GO:0016192,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0033263,GO:0034058,GO:0034613,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046872,GO:0046907,GO:0046914,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097708,GO:0099023 |
| EggNOG free text desc. | endosomal vesicle fusion |
| EggNOG OGs | KOG2079@1,KOG2079@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04131 |
| Exons | 2 |
| Model size | 1615 |
| Cds size | 1320 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7923.15952.1 >prot_H-paniculata_contig7923.15952.1 ID=prot_H-paniculata_contig7923.15952.1|Name=mRNA_H-paniculata_contig7923.15952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=440bp
MDQDVEAILNASESEEDDTLNVQGVSLEDILREDDGGDDSRDGNAYFGAG
GGAIGTEAGHLDSMLPDLQLENWRNIDTHRGANNSSTSRSPVRDNSGVTG
QSPLANVYSARQENGSRDESVTGAAEFSSEIVPPMGTIGAAHSDGFSGDS
DDILGISGMPPRTAFLTREEQSEDSRLLQQILKESEEEIAASIADRTKEG
GVVGTNGKPGAGGSSIKTEFLPSGAAGGGTGSRGEGSTGDLYGVESLLAE
FGDGRYSAGGGAGGDDDDALQSLDVDRIIESMELEAAGEDPDKVAAVATA
ASNSSVGVVPWRTRRRSFATGSSNVSGGGGVINDGRSSADRRELTGLASA
AAGANLSSVSATATDTDNAVAGRPRRGSTAEPLPVSPKSAGAAARSSRGM
EGEEAGTASRARRKGGPGERVSLGSVSMVAVGDGKGVNGR back to topmRNA from alignment at H-paniculata_contig7923:7331..10237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7923.15952.1 ID=mRNA_H-paniculata_contig7923.15952.1|Name=mRNA_H-paniculata_contig7923.15952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2907bp|location=Sequence derived from alignment at H-paniculata_contig7923:7331..10237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTTACCAGCCGGGCATTGCTTGCGCTGAGTGAGTACCTTATTTCAGTA
CAAACACACCTTCACCGTATGCAATTCGTATGTAAACTGGAGGGCTCGCC
TTCATTGCCCGGGTGAATTTGGTTTCCAGCACTGTTGCACATCGAAAACA
CCCCCGAAATCGGTGCTCGAGAGCACAAACATACAGCCAGAACAAAGCAC
TTCTTTTACTGACAAAGAGAGATCGAGCCAGCGCGTTTCCTGCCAGGGAG
GTGCGCTGGAGTGCGGCGACATCAGAGATACTCACCCGGAGCCAATGGAC
CAGGACGTGGAGGCTATTCTGAATGCCTCAGAGAGTGAAGAAGATGACAC
CCTGAATGTGCAAGGGGTGAGCCTGGAGGACATATTGCGAGAGGACGACG
GCGGCGATGACAGTCGTGATGGGAACGCCTACTTTGGCGCGGGTGGCGGC
GCAATTGGGACTGAAGCGGGGCATCTGGACAGGTACGACGGTATGCCGCT
GCAGTACTGACTGCTGCCTGACAACCGAGTATATATAATGACACGTCTGA
CACATGTTACTGTTCATCTATAGTTCGGAACAGCAGCGATGTGAAAAGGC
GAGCTGTCTTTAGGCTTGAAACCCTCTACCGTGGCAATTGATATTGAGAA
TTGAACTCTAGCGAAGATCCTTGCAGCACAAACAGAGCAGAAGGTGTTTG
GCACTCACTGTCTCTGCTGACCCAACTCGTATTATGACGTTCCGTTGGTA
GTCGTAAGTTCCTAATAGCAGCAGAGCCGGTCCTCTCAACACTCGTAACC
GCGTAGTTGAGACCACCTGGACGCTTTTGCCCCAGCCGTCAACACTAGCT
TGGGTCATTTGTCTCGTGATCTCACCTCCTGCGTACAGGATGGCATTATT
CCACCGCTTTGGTGGTCCGCCGTTATGTTCCAGTAGAGAAAGAAAGAGGG
TACTGCGGTTGCAGTGCAGACTGACTCTCTTGAACTGATTTACCCATCCA
GCGGCTGTGCCTTTTAAACGTCAGCGAAAATTTGAATACCCAACAGTTAA
CAAAGTCTTGGAGGGATGACTTCTGCGTTTCCTTGCGCTTTCTGTCGGGT
ACTGTTGCAGAGCCAAAAGGTGTACTGCACTGCTCTGCTACTGTCAACGG
TCGGTCACCCGCTCAAGTGTGACCGCCAAGTCGCACGCGCTAGGCAATAG
TCGTGTGGAAAAAGGTGGTGCCTTATCCTTCGCTCATGTATTTTATTGGT
GGTGAACTTCATTTCGGTCGAAACGACATGCGGAAGGGAGTGTGACAAGT
GAAAGACATGGTTAACGAAGACACAGAATCAAGTGCAACGGAACCAAAGC
TGGTGATACCTACTATCACAGTCGTGTCGCTCATTTACCTCTATTGGGCC
TATTCCCATCCAATCAATCCCCGTCTAATCCCTCCCTCAATAACAAGGGG
AAACGATGCTCATGACAAGCTCGTGGCTACGAGGATAGGGAGATGTCGCT
GTTCAGACAGTCCAGTATGGACAGCATCTATATTACAGCGCAGGCGGTGT
TTGGCAGGGTTCTGCTTATATCGATTGCAACGCTTGGCAGTTGTGCCGGA
AGCGTTTTTTTGTTCCGAAACAGACCCCGGATCTAACGGGGCGACTAAGC
ATTGGGCTGTTCTGCAATGTGTTCAGCTGCCGCATGACCACAAGCGAGAA
GAATCAACGATCACCGTCCCTGCTTGACCCCGAAAATCGCGTCCGCCTAC
AAATACACACACAAAACACGAGCAGCATGCTACCCGATCTACAGCTTGAA
AATTGGAGAAATATCGACACGCACCGGGGTGCTAACAACTCTTCAACTTC
TCGTTCTCCCGTCCGAGACAACAGTGGTGTAACCGGGCAATCTCCGTTAG
CGAATGTTTACTCCGCGAGACAAGAAAATGGCAGCAGAGACGAGTCGGTG
ACGGGGGCAGCCGAGTTTTCGTCGGAGATTGTCCCTCCGATGGGAACGAT
CGGCGCTGCCCACAGTGATGGCTTCAGTGGCGACAGCGACGACATCCTGG
GTATCAGCGGGATGCCCCCTCGCACGGCATTTCTCACTCGCGAAGAGCAA
TCGGAAGACTCGCGACTGCTGCAGCAGATCCTGAAGGAGAGCGAGGAGGA
AATAGCCGCTTCTATAGCAGACCGCACAAAAGAAGGAGGCGTTGTTGGCA
CGAACGGCAAACCAGGGGCCGGCGGGTCTTCTATCAAGACCGAGTTCCTC
CCAAGTGGTGCTGCTGGCGGCGGTACCGGCAGTCGGGGAGAGGGTAGCAC
CGGCGACTTGTATGGGGTTGAAAGCTTGTTGGCTGAGTTCGGAGACGGGC
GCTATAGTGCCGGTGGCGGCGCGGGCGGAGACGATGACGATGCCTTGCAG
AGCTTGGACGTGGACAGGATTATCGAGTCAATGGAGCTAGAGGCAGCAGG
CGAAGACCCCGACAAGGTTGCGGCAGTGGCGACGGCGGCATCAAATTCGT
CGGTCGGCGTTGTTCCATGGCGAACGCGCCGGCGATCCTTTGCCACCGGC
AGCAGCAATGTCAGTGGAGGCGGTGGTGTCATAAATGATGGTCGCAGTAG
CGCCGATCGACGCGAATTAACTGGACTAGCCTCTGCCGCTGCAGGGGCTA
ATTTGTCGTCTGTAAGCGCCACCGCCACTGATACCGACAATGCCGTGGCA
GGGCGTCCTCGCCGCGGCAGCACCGCAGAGCCGCTACCGGTGTCTCCCAA
ATCTGCGGGTGCTGCTGCTAGGTCGAGTCGAGGGATGGAGGGAGAAGAAG
CGGGAACGGCTTCTCGCGCGCGAAGGAAAGGAGGCCCTGGAGAGCGCGTG
TCTCTAGGATCAGTATCGATGGTGGCCGTGGGAGATGGGAAGGGAGTGAA
TGGGAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig7923:7331..10237+ >mRNA_H-paniculata_contig7923.15952.1 ID=mRNA_H-paniculata_contig7923.15952.1|Name=mRNA_H-paniculata_contig7923.15952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2640bp|location=Sequence derived from alignment at H-paniculata_contig7923:7331..10237+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCAGGACGTGGAGGCTATTCTGAATGCCTCAGAGAGTGAAGAAGA
TGACACCCTGAATGTGCAAGGGGTGAGCCTGGAGGACATATTGCGAGAGG
ACGACGGCGGCGATGACAGTCGTGATGGGAACGCCTACTTTGGCGCGGGT
GGCGGCGCAATTGGGACTGAAGCGGGGCATCTGGACAGATGGACCAGGAC
GTGGAGGCTATTCTGAATGCCTCAGAGAGTGAAGAAGATGACACCCTGAA
TGTGCAAGGGGTGAGCCTGGAGGACATATTGCGAGAGGACGACGGCGGCG
ATGACAGTCGTGATGGGAACGCCTACTTTGGCGCGGGTGGCGGCGCAATT
GGGACTGAAGCGGGGCATCTGGACAGCATGCTACCCGATCTACAGCTTGA
AAATTGGAGAAATATCGACACGCACCGGGGTGCTAACAACTCTTCAACTT
CTCGTTCTCCCGTCCGAGACAACAGTGGTGTAACCGGGCAATCTCCGTTA
GCGAATGTTTACTCCGCGAGACAAGAAAATGGCAGCAGAGACGAGTCGGT
GACGGGGGCAGCCGAGTTTTCGTCGGAGATTGTCCCTCCGATGGGAACGA
TCGGCGCTGCCCACAGTGATGGCTTCAGTGGCGACAGCGACGACATCCTG
GGTATCAGCGGGATGCCCCCTCGCACGGCATTTCTCACTCGCGAAGAGCA
ATCGGAAGACTCGCGACTGCTGCAGCAGATCCTGAAGGAGAGCGAGGAGG
AAATAGCCGCTTCTATAGCAGACCGCACAAAAGAAGGAGGCGTTGTTGGC
ACGAACGGCAAACCAGGGGCCGGCGGGTCTTCTATCAAGACCGAGTTCCT
CCCAAGTGGTGCTGCTGGCGGCGGTACCGGCAGTCGGGGAGAGGGTAGCA
CCGGCGACTTGTATGGGGTTGAAAGCTTGTTGGCTGAGTTCGGAGACGGG
CGCTATAGTGCCGGTGGCGGCGCGGGCGGAGACGATGACGATGCCTTGCA
GAGCTTGGACGTGGACAGGATTATCGAGTCAATGGAGCTAGAGGCAGCAG
GCGAAGACCCCGACAAGGTTGCGGCAGTGGCGACGGCGGCATCAAATTCG
TCGGTCGGCGTTGTTCCATGGCGAACGCGCCGGCGATCCTTTGCCACCGG
CAGCAGCAATGTCAGTGGAGGCGGTGGTGTCATAAATGATGGTCGCAGTA
GCGCCGATCGACGCGAATTAACTGGACTAGCCTCTGCCGCTGCAGGGGCT
AATTTGTCGTCTGTAAGCGCCACCGCCACTGATACCGACAATGCCGTGGC
AGGGCGTCCTCGCCGCGGCAGCACCGCAGAGCCGCTACCGGTGTCTCCCA
AATCTGCGGGTGCTGCTGCTAGGTCGAGTCGAGGGATGGAGGGAGAAGAA
GCGGGAACGGCTTCTCGCGCGCGAAGGAAAGGAGGCCCTGGAGAGCGCGT
GTCTCTAGGATCAGTATCGATGGTGGCCGTGGGAGATGGGAAGGGAGTGA
ATGGGAGACATGCTACCCGATCTACAGCTTGAAAATTGGAGAAATATCGA
CACGCACCGGGGTGCTAACAACTCTTCAACTTCTCGTTCTCCCGTCCGAG
ACAACAGTGGTGTAACCGGGCAATCTCCGTTAGCGAATGTTTACTCCGCG
AGACAAGAAAATGGCAGCAGAGACGAGTCGGTGACGGGGGCAGCCGAGTT
TTCGTCGGAGATTGTCCCTCCGATGGGAACGATCGGCGCTGCCCACAGTG
ATGGCTTCAGTGGCGACAGCGACGACATCCTGGGTATCAGCGGGATGCCC
CCTCGCACGGCATTTCTCACTCGCGAAGAGCAATCGGAAGACTCGCGACT
GCTGCAGCAGATCCTGAAGGAGAGCGAGGAGGAAATAGCCGCTTCTATAG
CAGACCGCACAAAAGAAGGAGGCGTTGTTGGCACGAACGGCAAACCAGGG
GCCGGCGGGTCTTCTATCAAGACCGAGTTCCTCCCAAGTGGTGCTGCTGG
CGGCGGTACCGGCAGTCGGGGAGAGGGTAGCACCGGCGACTTGTATGGGG
TTGAAAGCTTGTTGGCTGAGTTCGGAGACGGGCGCTATAGTGCCGGTGGC
GGCGCGGGCGGAGACGATGACGATGCCTTGCAGAGCTTGGACGTGGACAG
GATTATCGAGTCAATGGAGCTAGAGGCAGCAGGCGAAGACCCCGACAAGG
TTGCGGCAGTGGCGACGGCGGCATCAAATTCGTCGGTCGGCGTTGTTCCA
TGGCGAACGCGCCGGCGATCCTTTGCCACCGGCAGCAGCAATGTCAGTGG
AGGCGGTGGTGTCATAAATGATGGTCGCAGTAGCGCCGATCGACGCGAAT
TAACTGGACTAGCCTCTGCCGCTGCAGGGGCTAATTTGTCGTCTGTAAGC
GCCACCGCCACTGATACCGACAATGCCGTGGCAGGGCGTCCTCGCCGCGG
CAGCACCGCAGAGCCGCTACCGGTGTCTCCCAAATCTGCGGGTGCTGCTG
CTAGGTCGAGTCGAGGGATGGAGGGAGAAGAAGCGGGAACGGCTTCTCGC
GCGCGAAGGAAAGGAGGCCCTGGAGAGCGCGTGTCTCTAGGATCAGTATC
GATGGTGGCCGTGGGAGATGGGAAGGGAGTGAATGGGAGA back to top
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