prot_H-paniculata_contig7908.15936.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7908.15936.1
Unique Nameprot_H-paniculata_contig7908.15936.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length375
Homology
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BLAST of mRNA_H-paniculata_contig7908.15936.1 vs. uniprot
Match: D8LIN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN3_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.370e-21
Identity = 61/128 (47.66%), Postives = 77/128 (60.16%), Query Frame = 0 
Query:    1 MGINEVTKYLEATAAKKISERFGSNNPTGSDYVVGSGSPNVPAGSASDSALGSKSDSGFSVSASGPAPDIVRSAIVLICRDVRPARLVEHLHSLVVFTGTPHLVLPSASGALGRIFGVKTMAAFAICP 128
            MGINEVTK+LE+ AA   +     ++ +    +   G     +G    +  G+ ++ G   S   PAP     AIVLICRDVRPARLVEH+H+LVV T TP LVL   S +LG +FG KTMAA AICP
Sbjct:   76 MGINEVTKFLESKAAAAAAPPKTPSSASRGSSINRQGISKA-SGKCDSAQAGAGAEVGARASLVAPAPPHTPPAIVLICRDVRPARLVEHVHALVVLTATPFLVLSEPSSSLGGVFGCKTMAALAICP 202
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BLAST of mRNA_H-paniculata_contig7908.15936.1 vs. uniprot
Match: W7TQK6_9STRA (Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQK6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.010e-5
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0 
Query:   74 AIVLICRDVRPARLVEHLHSLVVFTGTPHLVLPSASGALGRIFGVKTMAAFAI 126
            +++LICRDVRPARLVEH+  L      P  +LP A+ ALG+  G+K +AA   
Sbjct:  198 SLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGF 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7908.15936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIN3_ECTSI2.370e-2147.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TQK6_9STRA1.010e-549.06Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nann... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7908contigH-paniculata_contig7908:864..2948 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7908.15936.1mRNA_H-paniculata_contig7908.15936.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7908 730..6603 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7908.15936.1 ID=prot_H-paniculata_contig7908.15936.1|Name=mRNA_H-paniculata_contig7908.15936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp
MGINEVTKYLEATAAKKISERFGSNNPTGSDYVVGSGSPNVPAGSASDSA
LGSKSDSGFSVSASGPAPDIVRSAIVLICRDVRPARLVEHLHSLVVFTGT
PHLVLPSASGALGRIFGVKTMAAFAICPPAPRHPQHKNNDKDRESPPTAT
TPTAAAAFPLRSAAEERKTLPPGNNTGNSTVLGPLHALRESTLKVTTTTT
TTTMVTTTVAALPAATKQEGGEEKSIVITQGKRDNGGVVGSGDDHGGVED
IPVISYTEKGGGGDNAGSESTFDACDDSGGGGSDGGSVEGGGGGIEGGGS
VDDCRLQGADGAERQLLARSVVEEGKERRNGSTKQKGRSSPVDLDVDSFV
VFLCGKAADAAATAATAAEVHVHR*
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