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Homology
BLAST of mRNA_H-paniculata_contig7908.15936.1 vs. uniprot
Match: D8LIN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN3_ECTSI) HSP 1 Score: 131 bits (330), Expect = 6.660e-31 Identity = 79/165 (47.88%), Postives = 101/165 (61.21%), Query Frame = 3
Query: 54 AIPASEQDIVVDRLEKEIVPLLKPESAARAAVRHRLRMGINEVTKYLEATAAKKISERFGSNNPTGSDYVVGSGSPNVPAGSASDSALGSKSDSGFSVSASGPAPDIVRSAIVLICRDVRPARLVEHLHSLVVFTGTPHLVLPSASGALGRIFGVKTMAAFAICP 548
A+ +E IV+DRL KEIV LL+ + + A R RLRMGINEVTK+LE+ AA + ++ + + G +G + G+ ++ G S PAP AIVLICRDVRPARLVEH+H+LVV T TP LVL S +LG +FG KTMAA AICP
Sbjct: 39 ALETNESKIVLDRLGKEIVTLLQAGGSKKDAARRRLRMGINEVTKFLESKAAAAAAPPKTPSSASRGSSINRQGISKA-SGKCDSAQAGAGAEVGARASLVAPAPPHTPPAIVLICRDVRPARLVEHVHALVVLTATPFLVLSEPSSSLGGVFGCKTMAALAICP 202
BLAST of mRNA_H-paniculata_contig7908.15936.1 vs. uniprot
Match: W7TQK6_9STRA (Ribosomal protein L7Ae/L8/Nhp2 family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQK6_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.520e-5 Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 3
Query: 384 AIVLICRDVRPARLVEHLHSLVVFTGTPHLVLPSASGALGRIFGVKTMAAFAI 542
+++LICRDVRPARLVEH+ L P +LP A+ ALG+ G+K +AA
Sbjct: 198 SLILICRDVRPARLVEHVAVLAAVRDVPFFLLPKATSALGQALGLKCIAALGF 250
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | 50S ribosomal protein L30e-like |
| Ec32 ortholog | Ec-11_004520.1 |
| Exons | 3 |
| Model size | 1423 |
| Cds size | 1125 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7908.15936.1 >prot_H-paniculata_contig7908.15936.1 ID=prot_H-paniculata_contig7908.15936.1|Name=mRNA_H-paniculata_contig7908.15936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp
MGINEVTKYLEATAAKKISERFGSNNPTGSDYVVGSGSPNVPAGSASDSA LGSKSDSGFSVSASGPAPDIVRSAIVLICRDVRPARLVEHLHSLVVFTGT PHLVLPSASGALGRIFGVKTMAAFAICPPAPRHPQHKNNDKDRESPPTAT TPTAAAAFPLRSAAEERKTLPPGNNTGNSTVLGPLHALRESTLKVTTTTT TTTMVTTTVAALPAATKQEGGEEKSIVITQGKRDNGGVVGSGDDHGGVED IPVISYTEKGGGGDNAGSESTFDACDDSGGGGSDGGSVEGGGGGIEGGGS VDDCRLQGADGAERQLLARSVVEEGKERRNGSTKQKGRSSPVDLDVDSFV VFLCGKAADAAATAATAAEVHVHR* back to topmRNA from alignment at H-paniculata_contig7908:730..6603- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7908.15936.1 ID=mRNA_H-paniculata_contig7908.15936.1|Name=mRNA_H-paniculata_contig7908.15936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5874bp|location=Sequence derived from alignment at H-paniculata_contig7908:730..6603- (Halopteris paniculata Hal_grac_a_UBK monoicous) GTTCTGCTGGGATAAAGTCACTGGGTCCGCCGCGGCATTCAAGGGGGCAT
GCCGCCATACCTGCGTCGGAGCAAGATATCGTGGTCGACAGGCTCGAGAA
GGAAATAGTGCCTCTCCTAAAGCCGGGTAGGTACAGACATACATACATAA
CATAAATACAAAGTTGTGATAGCCAGCGTTTTTTTATTTTTTATTTTTTT
ATTATGTTTGGTTTGGATTTTTGCTTCAGATTTGCACCAAATTTGATATA
TATATATATATATATATATTGTATCTATATATGTATGTATATACATATTA
ATGTACCTCAATTACTTTTATTTTTATGAAAAAAAAAAATGACGCCAAGT
TCCTCTTGATGGGGGTGTTCTAGATTGACTACTAGTATTGCTAGGATTGT
TTTTGCTGGCAGTTCCTAGAGGATTATCTATACCCGCAATGTTCCAAATT
TCTTCGCACACGTCAACGTGTTTGGTAAAACAAACCATATAAATTGCCTC
CCCCTGGACGTAAAACCGTATCAGAATTTACCTCAAGGGCTCGATTGATA
CCTGAGCTGTGGTAAACTCTTTAGAGTATCTGCAGTAAATACTCTTTTTG
TTGCAATGGATGCGAAGTATCAATAACCTCTCCCGCAACAGATCATGCAA
TGCGATGGCGGGCGGGGGGGGAGTGCATTGACTACGGGAGAGGGAGCGGG
CGCATGATGAGGACAGAGGCGTGAGCGGGAGGGAGCGAAAGTGAAGAACT
ACCTTCGCAGCGGGGGGGGAGGGGGGTGCGATGGCCTACCGATTGCAGTG
AATAACAACTTGAGGAAAACTGAGAGAACACACATGCTCCAGCGACTGCC
GCTGTTCGTGTCGATACTTTCCTAACGCACCCTCAAAGGAGACGCACGAG
TCAGAAAATCCGACCCCAAACGGATGTCCTTGAAGTCCCTCACTCGCGTT
TCCTAACTCTCCCTCTCCAGGGTTGGGAGTATTTGGACCTGTCACAACAC
GCCCCGAAATCCTCCCTATGGCGATTAGTCTTGTTTCTCTTTTTTGCACG
ACAAGTTAGCAAGTTTATCCACAGAAAAAGCAGCGGGCCCTACCTGGTAC
TTGGGTACACGCAACTGTTACTGTCATCCGGCCCCGATCACAAAGAAGAA
CTCAAGGAGCAGGCCCACCCCATGAAAAGAAAACGTTATCGAAAAAGTGC
CTACCTACTTCCAGCAGACACACAGGCGCTCTCTACCCGCGTTTGGTTGC
AGTTCCGCAAGGGGAATAGTGCTGTAAGCCAAAGCTGCATTTCAAGTCCT
CGGGGGAAGACTATTACTTCAACACATGGACTGGGAAAACGGGGGGGGAG
CGTACGCAAGGCGCTTGTCAACCTCGCTCCTATACTATCGACCACAGGTC
CTCCATCCTCAAAGCTGCTCGTCGCCGTCCACGCACATACGTCCTCACCC
TTATGTGCTCGTCCTTACGTCCTCCTCCTTTCGTTCCCGTAATCCTTGGC
CCCATTCGCAGCTACTTAGATCGGAATAAATGCGAAATAACGCGACTCTC
TGTAAAACCTATTACGTACGTGAGGATCATTCCCCATGCTAGAAGACAAT
CTCCAAATAAGTCCAAGACACAACACTGGACGGGGGGAAAGGAGGGGCCG
TTGGTTGGTGCACATGGAGGAAACGTACGCAAGGCAGTCGTCACCTGCGC
TCTTTTAGTATCATAGCCCCTCCGTCCTCGAAGCTACTCGTCGCCTTCCA
CATACATACACCTTCATCCTCCTGGCCTAGTTCTTGCATTGCTCATCGCC
GTCGCTTCTCCACCCGTGTAAGTTCTTTGTCGCCTTCGCTCATCGCCACC
TTACAAAGTGTGTTCCTACACGCCTTGATTTTTCTCGCGTGGTGTCGCCA
GCACTCCTTGACACCCTTTGTCGACGGCCGCCCGTCATACCACTACGTCG
AATGCATCTAGTCACAACTCGGTGAACTATGCCCTCTCCAGAGCACAGAT
GGTCCAGTGCTTGGCGATCCCGTATTCCGGTGCATTTTCGTTCGCCCGGT
ATCCTCATATGTCTTCTGTGGGCATTGCTGCATGGTGCAAGCCGGTGGCA
TGGTGAATTTTGCGAACTAAAGACGCTGGGGGAAACTTGGACCAAGCCAG
AACTACCCCGACCACACCCATCGATTTGTCATATATATATATATTTTTTA
ACCCCTGGAAGGCTTAGGCAAACACCTTTTACCGATGCTTCCATACTTAA
GTATTTTTACCGAAGTATTTCTAGATTTCCTTTAACAGAACAGAGTTATT
TATTCCTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCGAACCAAGCACCC
GCTAAAAGACCTCTGACTAGACTTTCAGTCATGCTCAGTTCACGAGCTAC
CCTACTTGTTCGGGCGTAGGTCCGTGGTCATAATCAATCAGCTCTGAAAT
AACAAGAAGAGACCGATCAACCCAATGTGAGGCTTGGGGTTCAGGTCAGG
CGCCCAAGGTCTGTAAATATGTAGATCGCTCAGTACCGTTGAAATTCCTA
CTGATCGTACCTTGAATTTGTTTGATGGTTATTACTTCGCGATTTCAAAT
GTAACTTGTCTCTTTTTTCGTTATCAATTCACGGTTTTCAAATCGTTTTC
TCATTGTGTAGAGTATGGATACCGTCCGTTCTACGGTTGAAGTTTTACTT
GTCGGCATGTATGTACACGGCGCAAGTCTTGCTGCCGTTGTTATGGTGTA
TCGCTCCGAAATTACCACCGCATCGGGCGGTATGCCTCTTAAACCTATGC
CCTACAAATCCATGGCAAACCCGTTTGATGTGCAGCGGCAAAAAGGTGAA
CCGCTGAATACGTCTGTGCAGTCGTGATACACGCGCGTGTGCTACTGTTG
GTCTCCTTTGATTGTTAGATGCATCAGTCCTTCCGCATGTCGTTACCTAT
TTCAAGCAGTTGCTATTATGAATTGCTGGGGCACTTAGGTCACAAACAGG
GTGAGTTGCAGGCTTTTTTAGATCATTCATTCATGCCGTACACCCCCGCA
AAATCGTCAGCACCTCCCCTTGAGTTGTTCTCGTTTTGGTGATGGTGGCT
ATATCCAGGCATAACGGGTTCATTGTAGGCTAAATGCACCAAATCAATTC
TGACACAGTGAACAGCAGGAGCGGTGAACAAGTCGATGACCATCCGCTTA
ACTTGGTCAGTTTATGGACAAGTTAGCCAGCAGCTTTTCTCCCTCATGTA
TCTAATGTAACTTTGCTGATGATTATCCATAACTAAGATTGAGGTCAGCT
GCACAACTAGCTCAACAGGGTTACGATATAATGTTAATATATGAGCGTTA
TAGATCCACTACTTGTGAATGAAGAATGAGGCTCAAGGCTTGCGGTGATT
GAATTTGGTATTTTATTCCTGTGATGGGTTCACGTGACAGCTACTTGATG
AGGTGATACCAAATGACATACCGAAAGACCCCCCCCCTCCCTCGCCATGC
ACGTGTATCGACTTGTGTTTATAGTTTTGTTCGTAATCAGAAAGCGCCGC
ACGCCCCCCCTCCATCCTTCGCCATGCGCGTGTATCGACTTGTGTTTGTA
TTTTTGTTCGTAATCAGAAAGCGCCGCACGCGCCGCCGTTAGGCATCGGC
TGCGCATGGGCATAAACGAGGTCACCAAGTACCTCGAGGCTACGGCGGCA
AAGAAAATCTCGGAGAGATTCGGTTCCAACAATCCCACCGGTTCAGACTA
CGTTGTAGGATCCGGTTCGCCGAATGTTCCGGCTGGTTCCGCGTCAGATT
CCGCCCTAGGTTCGAAATCCGATTCGGGTTTTTCCGTGTCCGCGTCCGGG
CCTGCCCCAGATATAGTGAGATCCGCAATTGTGCTGATCTGCCGCGATGT
TCGGCCGGCCAGGCTGGTAGAGCACCTGCATTCTCTTGTTGTATTCACAG
GTGCGGACGTTGTAGATTAGGTGGACATAAACTGTGTTTTTTTCGCAAGC
GCACGTATCTATGAATTTTTGTGTCTCTTGTGCCTTTGGGTTGAAATCTG
TGAGTACATGAGAGCACAGATAGGAAGTTGACATTGTTATGTGCACACAA
AAACAGCAGCGCTCGACGTTGTCTGCTGTCGGATTCATGTTTAACTGTTC
TGAAAAAGCTTGCGGCGCTCAGAGGGGCTAGACTCAAGACAAGTTTTGGG
GAAGCTTACCTTACTGCTTCACGAATTGAACATCACCTCTTGTTCCGGTA
TGTATCCGTTTGGTTTGATGTGTATTTGCCGGCGGCGTGTGTTTGCGGTT
TTTAAGGATATGTGTAGAGTTATTGCGATTTTTTCCTGTAGACAAGCAGC
AAACAAGCACCATGTTTTCGTTCTTGAATTACATCGCACGCGCCGCGTTC
CACTACTCCTTCCCCCCTCCCCCCTCCCTCTTTTTCCAGCGTTTTTTCGA
CCATACGTAGTAGTAGTAAAAGTGCTGTACTCTCTTCTTACCACAAAAAA
GAGGAAATAAGCTAAGCACCGTTGCATTGGCTTTACCACGCACTACGAAC
GAGTGAGGCCGACGATGTAGTATTGATTGATCAATTGCACCAAATCCTGG
TGCAATCGACTAGAACTAACTCAATGACGAAGAATAAACAAAACTGCTGA
ACTCAACTGGGCTCTTAGAGAACTAGAACTAAACTCAATACAGTACGAGT
AACAACCAAAAGCAAGAGAAACAAAAAGACAACGATTTTCTCCTCCCTCT
CTACATAGGACCTCCGGAAACGTCATCACCACCACCACCACCACAACAAG
AACAGGAATAGCATATCATCGCAGTCTCTTCCCTACCCTTACGACCCTCC
GTCATTATCCACAACTAACACACCACCCGGTTTTCCCCTCTCCCCCCTCT
CATTATTCAGGAACTCCGCATCTGGTGCTGCCCAGCGCCAGCGGCGCCCT
CGGTCGAATATTCGGGGTGAAGACTATGGCCGCGTTTGCAATTTGCCCTC
CTGCGCCGCGGCACCCCCAACATAAGAACAACGATAAAGACCGGGAGTCT
CCTCCGACAGCAACAACCCCAACCGCTGCAGCGGCGTTTCCGTTACGTTC
GGCAGCAGAAGAGAGGAAAACGCTTCCGCCAGGGAACAATACTGGAAACT
CCACTGTCTTGGGACCATTACACGCACTTCGGGAATCCACGCTGAAAGTG
ACGACGACGACGACGACGACGACGATGGTGACGACGACAGTAGCGGCACT
ACCAGCAGCTACAAAACAAGAAGGCGGCGAAGAAAAATCGATCGTTATAA
CTCAGGGGAAGAGAGATAACGGCGGAGTTGTTGGTAGCGGTGATGATCAT
GGGGGAGTAGAAGATATTCCCGTGATAAGTTACACAGAGAAAGGTGGAGG
GGGAGACAATGCCGGTTCGGAATCGACCTTTGACGCTTGTGATGATAGTG
GTGGTGGTGGCAGTGACGGAGGCAGTGTTGAGGGTGGAGGCGGCGGTATT
GAGGGTGGTGGTAGTGTGGATGATTGTCGATTACAGGGAGCTGATGGAGC
AGAAAGGCAACTATTGGCGAGAAGCGTTGTTGAGGAGGGGAAGGAGAGGC
GGAACGGCTCGACAAAGCAGAAGGGGCGTTCTTCGCCTGTAGATTTGGAT
GTCGATTCTTTCGTTGTCTTTCTCTGCGGAAAAGCTGCCGATGCTGCTGC
TACTGCCGCTACTGCAGCAGAAGTCCACGTCCATCGGTAGTGCGGAAACT
CATTTAGTTGGATATACATGGCCACGAAATTCGGGATATTTTATATTCAG
GAAAATCGGGTTGTAAAAAAAAACCAAACACATGTTTAACCATGGAAATA
TTAGACGAGTTCTTATCGAGGTTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig7908:730..6603- >mRNA_H-paniculata_contig7908.15936.1 ID=mRNA_H-paniculata_contig7908.15936.1|Name=mRNA_H-paniculata_contig7908.15936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2250bp|location=Sequence derived from alignment at H-paniculata_contig7908:730..6603- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGCATAAACGAGGTCACCAAGTACCTCGAGGCTACGGCGGCAAAGAA AATCTCGGAGAGATTCGGTTCCAACAATCCCACCGGTTCAGACTACGTTG TAGGATCCGGTTCGCCGAATGTTCCGGCTGGTTCCGCGTCAGATTCCGCC CTAGGTTCGAAATCCGATTCGGGTTTTTCCGTGTCCGCGTCCGGGCCTGC CCCAGATATAGTGAGATCCGCAATTGTGCTGATCTGCCGCGATGTTCGGC CGGCCAGGCTGGTAGAGCACCTGCATTCTCTTGTTGTATTCACAGATGGG CATAAACGAGGTCACCAAGTACCTCGAGGCTACGGCGGCAAAGAAAATCT CGGAGAGATTCGGTTCCAACAATCCCACCGGTTCAGACTACGTTGTAGGA TCCGGTTCGCCGAATGTTCCGGCTGGTTCCGCGTCAGATTCCGCCCTAGG TTCGAAATCCGATTCGGGTTTTTCCGTGTCCGCGTCCGGGCCTGCCCCAG ATATAGTGAGATCCGCAATTGTGCTGATCTGCCGCGATGTTCGGCCGGCC AGGCTGGTAGAGCACCTGCATTCTCTTGTTGTATTCACAGGAACTCCGCA TCTGGTGCTGCCCAGCGCCAGCGGCGCCCTCGGTCGAATATTCGGGGTGA AGACTATGGCCGCGTTTGCAATTTGCCCTCCTGCGCCGCGGCACCCCCAA CATAAGAACAACGATAAAGACCGGGAGTCTCCTCCGACAGCAACAACCCC AACCGCTGCAGCGGCGTTTCCGTTACGTTCGGCAGCAGAAGAGAGGAAAA CGCTTCCGCCAGGGAACAATACTGGAAACTCCACTGTCTTGGGACCATTA CACGCACTTCGGGAATCCACGCTGAAAGTGACGACGACGACGACGACGAC GACGATGGTGACGACGACAGTAGCGGCACTACCAGCAGCTACAAAACAAG AAGGCGGCGAAGAAAAATCGATCGTTATAACTCAGGGGAAGAGAGATAAC GGCGGAGTTGTTGGTAGCGGTGATGATCATGGGGGAGTAGAAGATATTCC CGTGATAAGTTACACAGAGAAAGGTGGAGGGGGAGACAATGCCGGTTCGG AATCGACCTTTGACGCTTGTGATGATAGTGGTGGTGGTGGCAGTGACGGA GGCAGTGTTGAGGGTGGAGGCGGCGGTATTGAGGGTGGTGGTAGTGTGGA TGATTGTCGATTACAGGGAGCTGATGGAGCAGAAAGGCAACTATTGGCGA GAAGCGTTGTTGAGGAGGGGAAGGAGAGGCGGAACGGCTCGACAAAGCAG AAGGGGCGTTCTTCGCCTGTAGATTTGGATGTCGATTCTTTCGTTGTCTT TCTCTGCGGAAAAGCTGCCGATGCTGCTGCTACTGCCGCTACTGCAGCAG AAGTCCACGTCCATCGGTAGGAACTCCGCATCTGGTGCTGCCCAGCGCCA GCGGCGCCCTCGGTCGAATATTCGGGGTGAAGACTATGGCCGCGTTTGCA ATTTGCCCTCCTGCGCCGCGGCACCCCCAACATAAGAACAACGATAAAGA CCGGGAGTCTCCTCCGACAGCAACAACCCCAACCGCTGCAGCGGCGTTTC CGTTACGTTCGGCAGCAGAAGAGAGGAAAACGCTTCCGCCAGGGAACAAT ACTGGAAACTCCACTGTCTTGGGACCATTACACGCACTTCGGGAATCCAC GCTGAAAGTGACGACGACGACGACGACGACGACGATGGTGACGACGACAG TAGCGGCACTACCAGCAGCTACAAAACAAGAAGGCGGCGAAGAAAAATCG ATCGTTATAACTCAGGGGAAGAGAGATAACGGCGGAGTTGTTGGTAGCGG TGATGATCATGGGGGAGTAGAAGATATTCCCGTGATAAGTTACACAGAGA AAGGTGGAGGGGGAGACAATGCCGGTTCGGAATCGACCTTTGACGCTTGT GATGATAGTGGTGGTGGTGGCAGTGACGGAGGCAGTGTTGAGGGTGGAGG CGGCGGTATTGAGGGTGGTGGTAGTGTGGATGATTGTCGATTACAGGGAG CTGATGGAGCAGAAAGGCAACTATTGGCGAGAAGCGTTGTTGAGGAGGGG AAGGAGAGGCGGAACGGCTCGACAAAGCAGAAGGGGCGTTCTTCGCCTGT AGATTTGGATGTCGATTCTTTCGTTGTCTTTCTCTGCGGAAAAGCTGCCG ATGCTGCTGCTACTGCCGCTACTGCAGCAGAAGTCCACGTCCATCGGTAG back to top
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