prot_H-paniculata_contig78909.15912.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig78909.15912.1
Unique Name	prot_H-paniculata_contig78909.15912.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	114

Homology

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 6.760e-32
Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+ G K+V S GG  Y  +++DDF+R+ WIYF R KSD    F  FLA    D  PS+V TVRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:  333 VDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQA 451

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.790e-30
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+ G K V S GG  Y  +++DDF+R+ W+YF R KSD    F  FLA    D  PS++  VRSD GGEF    F+ +C    ++QE+TPA SPE+NGVAERG+ L+E+AAMA RIQA
Sbjct:  480 VDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQA 598

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.180e-30
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+ G K V S GG  Y  +++DDF+R+ W+YF + KSD    F  FLA    D  PS+V  VRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:  729 VDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQA 847

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.200e-30
Identity = 61/119 (51.26%), Postives = 80/119 (67.23%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+ G K V S GG  Y  +++DDF+R+ W+YF + KSD    F  FLA    D  PS+V  VRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:  436 VDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQA 554

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.440e-30
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+ G K V S GG  Y  +++DDF+R+ W+YF + KSD    F  FLA    D  PS+V  VRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E AAMA RIQA
Sbjct:  635 VDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQA 753

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.800e-29
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +++ G K V S GG  Y  +++DDF+R+ W+YF R KSD    F  FLA    D  PS++  VRSD GGEF    F+ +C    ++QE+TPA SPE+NGVAERG+ L+E+AAMA RIQA
Sbjct:  456 VNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQA 574

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.050e-29
Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLADN----TPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+SG   V+S GG  Y+ +++DD++R   +YF + KSD    FE++LA+N     PS V  VRSD GGEF E  F  +CR   ++QE+TPA SPEY+GVAER + L+E AA+A RIQA
Sbjct:   39 VDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQA 157

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5KN22_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN22_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.400e-29
Identity = 61/119 (51.26%), Postives = 79/119 (66.39%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFL----ADNTPSVVGTVRSDGGGE-FTEPFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+ G K V S GG  Y  +++DDF+R+ W+ F + KSD  R F  FL    AD  PS+V  VRSD GGE F   F+ +C    ++QE+TPA SP+YNGVAERG+ L+E AAMA RIQA
Sbjct:   18 VDLGGRKDVASVGGKHYPMVVKDDFTRRTWLCFLKNKSDAGRAFRSFLVGVRADGIPSLVEIVRSDNGGECFGGDFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQA 136

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.950e-29
Identity = 59/118 (50.00%), Postives = 77/118 (65.25%), Query Frame = 0

Query:    2 DVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            D+ G K + S GG  Y  +++DDF+R  W+YF R KSD    F  FLA    +  PS V  VRSD GG+F    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:   98 DLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQA 215

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 8.350e-29
Identity = 60/119 (50.42%), Postives = 78/119 (65.55%), Query Frame = 0

Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQF----LADNTPSVVGTVRSD-GGGEFTEPFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 114
            +D+ G K V S GG  Y  +++DDF+R+ W+YF R KSD    F  F     AD  PS++  VRSD GGG F   F+ +C    ++QE+TPA SPE+NGVAERG+ L E+AAMA RIQA
Sbjct:  130 VDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFHANVRADGIPSLIEIVRSDNGGGFFGGEFASVCNELVIKQEFTPAHSPEFNGVAERGLGLTEEAAMAARIQA 248

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JB16_9PHAE	6.760e-32	53.78	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K622_9PHAE	3.790e-30	51.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBA7_9PHAE	5.180e-30	51.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	5.200e-30	51.26	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2M6_9PHAE	9.440e-30	51.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH25_9PHAE	1.800e-29	50.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J7U9_9PHAE	2.050e-29	49.58	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KN22_9PHAE	2.400e-29	51.26	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVR5_9PHAE	2.950e-29	50.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5J594_9PHAE	8.350e-29	50.42	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..111 e-value: 2.6E-14 score: 54.9
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 8..105 e-value: 2.3E-13 score: 50.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..114 score: 13.463
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig78909	contig	H-paniculata_contig78909:21..362 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig78909.15912.1	mRNA_H-paniculata_contig78909.15912.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig78909 6..362 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig78909.15912.1 ID=prot_H-paniculata_contig78909.15912.1|Name=mRNA_H-paniculata_contig78909.15912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLAD
NTPSVVGTVRSDGGGEFTEPFSDLCRTRGVRQEYTPADSPEYNGVAERGI
ALVEQAAMAPRIQA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf