mRNA_H-paniculata_contig78909.15912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig78909.15912.1
Unique Name	mRNA_H-paniculata_contig78909.15912.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.080e-34
Identity = 67/124 (54.03%), Postives = 86/124 (69.35%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            + RVF+D+ G K+V S GG  Y  +++DDF+R+ WIYF R KSD    F  FLA    D  PS+V TVRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:  328 IGRVFVDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQA 451

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.270e-32
Identity = 65/124 (52.42%), Postives = 84/124 (67.74%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF+D+ G K V S GG  Y  +++DDF+R+ W+YF + KSD    F  FLA    D  PS+V  VRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:  724 LGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQA 847

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.270e-32
Identity = 65/124 (52.42%), Postives = 84/124 (67.74%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF+D+ G K V S GG  Y  +++DDF+R+ W+YF + KSD    F  FLA    D  PS+V  VRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:  431 LGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQA 554

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.300e-32
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF+D+ G K V S GG  Y  +++DDF+R+ W+YF + KSD    F  FLA    D  PS+V  VRSD GGEF    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E AAMA RIQA
Sbjct:  630 LGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQA 753

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.480e-32
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLADN----TPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF+D+SG   V+S GG  Y+ +++DD++R   +YF + KSD    FE++LA+N     PS V  VRSD GGEF E  F  +CR   ++QE+TPA SPEY+GVAER + L+E AA+A RIQA
Sbjct:   34 LQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQA 157

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.380e-32
Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 1

Query:    7 RVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            RVF+D+ G K V S GG  Y  +++DDF+R+ W+YF R KSD    F  FLA    D  PS++  VRSD GGEF    F+ +C    ++QE+TPA SPE+NGVAERG+ L+E+AAMA RIQA
Sbjct:  477 RVFVDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQA 598

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.400e-32
Identity = 64/124 (51.61%), Postives = 84/124 (67.74%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF+++ G K V S GG  Y  +++DDF+R+ W+YF R KSD    F  FLA    D  PS++  VRSD GGEF    F+ +C    ++QE+TPA SPE+NGVAERG+ L+E+AAMA RIQA
Sbjct:  451 LGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQA 574

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5KN22_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN22_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 4.470e-32
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFL----ADNTPSVVGTVRSDGGGE-FTEPFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF+D+ G K V S GG  Y  +++DDF+R+ W+ F + KSD  R F  FL    AD  PS+V  VRSD GGE F   F+ +C    ++QE+TPA SP+YNGVAERG+ L+E AAMA RIQA
Sbjct:   13 LGRVFVDLGGRKDVASVGGKHYPMVVKDDFTRRTWLCFLKNKSDAGRAFRSFLVGVRADGIPSLVEIVRSDNGGECFGGDFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQA 136

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 5.780e-32
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF D+ G K + S GG  Y  +++DDF+R  W+YF R KSD    F  FLA    +  PS V  VRSD GG+F    F+ +C    ++QE+TPA SP+YNGVAERG+ L+E+AAMA RIQA
Sbjct:   92 LGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQA 215

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BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 3.660e-31
Identity = 62/124 (50.00%), Postives = 84/124 (67.74%), Query Frame = 1

Query:    1 LNRVFMDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLA----DNTPSVVGTVRSDGGGEFTE-PFSDLCRTRGVRQEYTPADSPEYNGVAERGIALVEQAAMAPRIQA 357
            L RVF+D+ G K V S GG  Y  +++DDF+R+  +YF R KSD   +F  FLA    D  PS++  VRSD GG+F    F+ +C    ++QE+TPA SPE+NGVAERG+ L+++AAMA RIQA
Sbjct:  279 LGRVFVDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLANVRADGIPSLIEIVRSDNGGKFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIKEAAMAARIQA 402

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig78909.15912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JB16_9PHAE	3.080e-34	54.03	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JBA7_9PHAE	1.270e-32	52.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZH7_9PHAE	1.270e-32	52.42	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2M6_9PHAE	2.300e-32	52.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J7U9_9PHAE	2.480e-32	50.81	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K622_9PHAE	4.380e-32	52.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH25_9PHAE	4.400e-32	51.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN22_9PHAE	4.470e-32	52.42	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVR5_9PHAE	5.780e-32	50.81	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KVT7_9PHAE	3.660e-31	50.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig78909	contig	H-paniculata_contig78909:6..362 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	80.5
Seed ortholog evalue	5.6e-13
Seed eggNOG ortholog	4081.Solyc06g060030.1.1
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Mitochondrial protein
EggNOG OGs	37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	asterids
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	357
Cds size	342
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930981.6242263-UTR-H-paniculata_contig78909:5..20	1622930981.6242263-UTR-H-paniculata_contig78909:5..20	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig78909 6..20 +
1691481537.3220518-UTR-H-paniculata_contig78909:5..20	1691481537.3220518-UTR-H-paniculata_contig78909:5..20	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig78909 6..20 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930981.6392434-CDS-H-paniculata_contig78909:20..362	1622930981.6392434-CDS-H-paniculata_contig78909:20..362	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig78909 21..362 +
1691481537.3387384-CDS-H-paniculata_contig78909:20..362	1691481537.3387384-CDS-H-paniculata_contig78909:20..362	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig78909 21..362 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig78909.15912.1	prot_H-paniculata_contig78909.15912.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig78909 21..362 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig78909:6..362+
coding sequence from alignment at H-paniculata_contig78909:6..362+

protein sequence of mRNA_H-paniculata_contig78909.15912.1

>prot_H-paniculata_contig78909.15912.1 ID=prot_H-paniculata_contig78909.15912.1|Name=mRNA_H-paniculata_contig78909.15912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MDVSGPKSVESTGGMRYSFLIRDDFSRKIWIYFGRQKSDTTRIFEQFLAD
NTPSVVGTVRSDGGGEFTEPFSDLCRTRGVRQEYTPADSPEYNGVAERGI
ALVEQAAMAPRIQA

mRNA from alignment at H-paniculata_contig78909:6..362+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig78909.15912.1 ID=mRNA_H-paniculata_contig78909.15912.1|Name=mRNA_H-paniculata_contig78909.15912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=357bp|location=Sequence derived from alignment at H-paniculata_contig78909:6..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGAATCGAGTTTTCATGGATGTGTCTGGTCCAAAGTCAGTGGAGAGTAC
TGGGGGAATGAGATATTCATTTCTTATTCGAGATGACTTTTCGCGCAAAA
TCTGGATTTATTTTGGTAGACAAAAATCGGATACCACAAGAATTTTCGAG
CAATTTCTGGCGGACAATACTCCCTCGGTGGTAGGAACTGTCAGGTCCGA
CGGTGGAGGTGAATTTACGGAACCTTTTAGTGATCTTTGTAGGACACGAG
GTGTGAGGCAGGAATACACACCAGCAGACAGTCCGGAGTATAATGGTGTT
GCTGAACGCGGGATAGCACTGGTCGAACAAGCAGCCATGGCCCCTCGCAT
TCAAGCC

Coding sequence (CDS) from alignment at H-paniculata_contig78909:6..362+

>mRNA_H-paniculata_contig78909.15912.1 ID=mRNA_H-paniculata_contig78909.15912.1|Name=mRNA_H-paniculata_contig78909.15912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig78909:6..362+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGTGTCTGGTCCAAAGTCAGTGGAGAGTACTGGGGGAATGAGATA
TTCATTTCTTATTCGAGATGACTTTTCGCGCAAAATCTGGATTTATTTTG
GTAGACAAAAATCGGATACCACAAGAATTTTCGAGCAATTTCTGGCGGAC
AATACTCCCTCGGTGGTAGGAACTGTCAGGTCCGACGGTGGAGGTGAATT
TACGGAACCTTTTAGTGATCTTTGTAGGACACGAGGTGTGAGGCAGGAAT
ACACACCAGCAGACAGTCCGGAGTATAATGGTGTTGCTGAACGCGGGATA
GCACTGGTCGAACAAGCAGCCATGGCCCCTCGCATTCAAGCCATGGATGT
GTCTGGTCCAAAGTCAGTGGAGAGTACTGGGGGAATGAGATATTCATTTC
TTATTCGAGATGACTTTTCGCGCAAAATCTGGATTTATTTTGGTAGACAA
AAATCGGATACCACAAGAATTTTCGAGCAATTTCTGGCGGACAATACTCC
CTCGGTGGTAGGAACTGTCAGGTCCGACGGTGGAGGTGAATTTACGGAAC
CTTTTAGTGATCTTTGTAGGACACGAGGTGTGAGGCAGGAATACACACCA
GCAGACAGTCCGGAGTATAATGGTGTTGCTGAACGCGGGATAGCACTGGT
CGAACAAGCAGCCATGGCCCCTCGCATTCAAGCC