prot_H-paniculata_contig76483.15644.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig76483.15644.1
Unique Name	prot_H-paniculata_contig76483.15644.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	87

Homology

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-21
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 0

Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            + + +W EAV+++VY LN  PT+     TP+E WHG TP +  L+VFGC  Y +    +R KL+ K+  G+FLGY   S  Y +YNP
Sbjct:  579 LPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNP 665

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A8J5C4K2_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C4K2_ZINOF)

HSP 1 Score: 93.6 bits (231), Expect = 2.330e-20
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0

Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            +  ++W EAV++TVY LNR+PT+     TP+E W+   P +N L+VFGC  Y     Q R K ++K    +F+GY ++S  Y +YNP
Sbjct:  569 LPNKFWAEAVNTTVYILNRSPTKAVQNRTPFEAWYDRKPVVNQLKVFGCVAYARMLPQNREKFDEKGEKFIFIGYSDESKGYRLYNP 655

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 0

Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYN 86
            + +++W EAV ++VY LNR  TR  N  TPYE W+G  P ++ LR+FGC  Y      +R KL+ KA  G+FLGY  +   Y VYN
Sbjct:  466 LPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYN 551

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A8J6CVX8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CVX8_9ROSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.060e-19
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0

Query:    4 RYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            ++W EAV+++VY LN+ PTR     TP+E W+G  P ++ L+VFGC  YV+  +++R KL  ++  G+F+GY      Y VY+P
Sbjct:  501 KFWAEAVNTSVYLLNKLPTRAMKEKTPFEAWYGLKPSVSHLKVFGCVCYVLILAERRTKLERRSAPGIFIGYSSTKKGYRVYDP 584

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 90.5 bits (223), Expect = 2.840e-19
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 0

Query:    4 RYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            R+W EAV + VY LNR+PT+  +  TPYE WHG  P +  LRVFGC  YV        KL+D+    VF+GY++ S +Y +Y+P
Sbjct:  703 RFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDP 786

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 2.840e-19
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0

Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            + R +W EAV   VY LNR PT+     TP E W G+ P +  L++FGC  Y     Q R KL+D+    +F+GYDE S +Y +YNP
Sbjct:  467 LPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 553

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 2.850e-19
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0

Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            + R +W EAV   VY LNR PT+     TP E W G+ P +  L++FGC  Y     Q R KL+D+    +F+GYDE S +Y +YNP
Sbjct:  409 LPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 495

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 2.850e-19
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0

Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            + R +W EAV   VY LNR PT+     TP E W G+ P +  L++FGC  Y     Q R KL+D+    +F+GYDE S +Y +YNP
Sbjct: 1435 LPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 1521

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A8J6CZM8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CZM8_9ROSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.780e-19
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0

Query:    4 RYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            ++W EAV+++VY LN+ PTR  N  TP+E W+G  P ++ L+VFGC  Y +  +++R KL  ++  G+F+GY      Y VY+P
Sbjct:   14 KFWAEAVNTSVYLLNKLPTRAVNDKTPFEAWYGLKPSVSHLKVFGCMCYALIPAERRTKLERRSAPGIFVGYSSTKKGYRVYDP 97

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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A1U8MHG7_GOSHI (uncharacterized protein LOC107937785 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MHG7_GOSHI)

HSP 1 Score: 90.1 bits (222), Expect = 3.900e-19
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0

Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 87
            +  ++W EAV+++VY LNR PTR     TP+E WH   P +  L+VFGC  Y +   ++R KL  +A  G+F+GY+ +   Y VY+P
Sbjct:  700 LSSQFWAEAVNTSVYLLNRLPTRAIKDKTPFEAWHRVKPVVTHLKVFGCVCYALIPVEKRTKLKGRATPGIFVGYNSNKKGYRVYDP 786

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A151T355_CAJCA	3.620e-21	43.68	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A8J5C4K2_ZINOF	2.330e-20	41.38	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A1R3HGA4_COCAP	1.120e-19	45.35	Integrase, catalytic core n=1 Tax=Corchorus capsul...	[more]
A0A8J6CVX8_9ROSI	2.060e-19	41.67	Integrase catalytic domain-containing protein n=1 ...	[more]
Q7XTU6_ORYSJ	2.840e-19	46.43	OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs...	[more]
A0A6A3C4D2_HIBSY	2.840e-19	43.68	FAD-binding Berberine family protein n=1 Tax=Hibis...	[more]
A0A6A3ACL1_HIBSY	2.850e-19	43.68	Putative cyclic nucleotide-gated ion channel 8 n=1...	[more]
A0A6A2WXP0_HIBSY	2.850e-19	43.68	Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10...	[more]
A0A8J6CZM8_9ROSI	3.780e-19	41.67	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A1U8MHG7_GOSHI	3.900e-19	41.38	uncharacterized protein LOC107937785 n=2 Tax=Gossy...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 4..87
None	No IPR available	PANTHER	PTHR11439:SF247		coord: 4..87
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..39

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig76483	contig	H-paniculata_contig76483:328..588 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig76483.15644.1	mRNA_H-paniculata_contig76483.15644.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig76483 328..588 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig76483.15644.1 ID=prot_H-paniculata_contig76483.15644.1|Name=mRNA_H-paniculata_contig76483.15644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCT
VYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf