mRNA_H-paniculata_contig76483.15644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76483.15644.1
Unique NamemRNA_H-paniculata_contig76483.15644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-21
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            + + +W EAV+++VY LN  PT+     TP+E WHG TP +  L+VFGC  Y +    +R KL+ K+  G+FLGY   S  Y +YNP
Sbjct:  579 LPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNP 665
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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A8J5C4K2_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C4K2_ZINOF)

HSP 1 Score: 93.6 bits (231), Expect = 2.330e-20
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            +  ++W EAV++TVY LNR+PT+     TP+E W+   P +N L+VFGC  Y     Q R K ++K    +F+GY ++S  Y +YNP
Sbjct:  569 LPNKFWAEAVNTTVYILNRSPTKAVQNRTPFEAWYDRKPVVNQLKVFGCVAYARMLPQNREKFDEKGEKFIFIGYSDESKGYRLYNP 655
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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYN 258
            + +++W EAV ++VY LNR  TR  N  TPYE W+G  P ++ LR+FGC  Y      +R KL+ KA  G+FLGY  +   Y VYN
Sbjct:  466 LPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYN 551
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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A8J6CVX8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CVX8_9ROSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.060e-19
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   10 RYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            ++W EAV+++VY LN+ PTR     TP+E W+G  P ++ L+VFGC  YV+  +++R KL  ++  G+F+GY      Y VY+P
Sbjct:  501 KFWAEAVNTSVYLLNKLPTRAMKEKTPFEAWYGLKPSVSHLKVFGCVCYVLILAERRTKLERRSAPGIFIGYSSTKKGYRVYDP 584
[Close]
BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 90.5 bits (223), Expect = 2.840e-19
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   10 RYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            R+W EAV + VY LNR+PT+  +  TPYE WHG  P +  LRVFGC  YV        KL+D+    VF+GY++ S +Y +Y+P
Sbjct:  703 RFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDP 786
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BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A6A3C4D2_HIBSY (FAD-binding Berberine family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C4D2_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 2.840e-19
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            + R +W EAV   VY LNR PT+     TP E W G+ P +  L++FGC  Y     Q R KL+D+    +F+GYDE S +Y +YNP
Sbjct:  467 LPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 553
[Close]
BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 2.850e-19
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            + R +W EAV   VY LNR PT+     TP E W G+ P +  L++FGC  Y     Q R KL+D+    +F+GYDE S +Y +YNP
Sbjct:  409 LPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 495
[Close]
BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 90.5 bits (223), Expect = 2.850e-19
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            + R +W EAV   VY LNR PT+     TP E W G+ P +  L++FGC  Y     Q R KL+D+    +F+GYDE S +Y +YNP
Sbjct: 1435 LPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNP 1521
[Close]
BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A8J6CZM8_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CZM8_9ROSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.780e-19
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:   10 RYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            ++W EAV+++VY LN+ PTR  N  TP+E W+G  P ++ L+VFGC  Y +  +++R KL  ++  G+F+GY      Y VY+P
Sbjct:   14 KFWAEAVNTSVYLLNKLPTRAVNDKTPFEAWYGLKPSVSHLKVFGCMCYALIPAERRTKLERRSAPGIFVGYSSTKKGYRVYDP 97
[Close]
BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Match: A0A1U8MHG7_GOSHI (uncharacterized protein LOC107937785 n=2 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8MHG7_GOSHI)

HSP 1 Score: 90.1 bits (222), Expect = 3.900e-19
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:    1 MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCTVYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP 261
            +  ++W EAV+++VY LNR PTR     TP+E WH   P +  L+VFGC  Y +   ++R KL  +A  G+F+GY+ +   Y VY+P
Sbjct:  700 LSSQFWAEAVNTSVYLLNRLPTRAIKDKTPFEAWHRVKPVVTHLKVFGCVCYALIPVEKRTKLKGRATPGIFVGYNSNKKGYRVYDP 786
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76483.15644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA3.620e-2143.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5C4K2_ZINOF2.330e-2041.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A1R3HGA4_COCAP1.120e-1945.35Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A8J6CVX8_9ROSI2.060e-1941.67Integrase catalytic domain-containing protein n=1 ... [more]
Q7XTU6_ORYSJ2.840e-1946.43OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs... [more]
A0A6A3C4D2_HIBSY2.840e-1943.68FAD-binding Berberine family protein n=1 Tax=Hibis... [more]
A0A6A3ACL1_HIBSY2.850e-1943.68Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
A0A6A2WXP0_HIBSY2.850e-1943.68Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A8J6CZM8_9ROSI3.780e-1941.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1U8MHG7_GOSHI3.900e-1941.38uncharacterized protein LOC107937785 n=2 Tax=Gossy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76483contigH-paniculata_contig76483:328..588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score91.7
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930944.8213809-CDS-H-paniculata_contig76483:327..5881622930944.8213809-CDS-H-paniculata_contig76483:327..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76483 328..588 +
1691481521.9546688-CDS-H-paniculata_contig76483:327..5881691481521.9546688-CDS-H-paniculata_contig76483:327..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76483 328..588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76483.15644.1prot_H-paniculata_contig76483.15644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76483 328..588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76483.15644.1

>prot_H-paniculata_contig76483.15644.1 ID=prot_H-paniculata_contig76483.15644.1|Name=mRNA_H-paniculata_contig76483.15644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
MGRRYWVEAVHSTVYCLNRAPTRPHNRGTPYEKWHGETPKLNDLRVFGCT
VYVMFQSQQRHKLNDKAWAGVFLGYDEDSPSYLVYNP
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mRNA from alignment at H-paniculata_contig76483:328..588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76483.15644.1 ID=mRNA_H-paniculata_contig76483.15644.1|Name=mRNA_H-paniculata_contig76483.15644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig76483:328..588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGTCGATATTGGGTGGAAGCGGTGCACTCGACAGTGTACTGCCT
AAATCGCGCCCCGACGCGACCGCACAACAGAGGAACGCCGTACGAAAAAT
GGCACGGCGAGACACCAAAGTTGAACGACCTTCGCGTCTTCGGCTGCACG
GTGTATGTTATGTTCCAGTCACAGCAGAGACACAAACTCAACGACAAAGC
ATGGGCGGGGGTGTTTCTGGGGTACGACGAGGACAGCCCGAGTTATCTCG
TATATAACCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig76483:328..588+

>mRNA_H-paniculata_contig76483.15644.1 ID=mRNA_H-paniculata_contig76483.15644.1|Name=mRNA_H-paniculata_contig76483.15644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig76483:328..588+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGTCGATATTGGGTGGAAGCGGTGCACTCGACAGTGTACTGCCT
AAATCGCGCCCCGACGCGACCGCACAACAGAGGAACGCCGTACGAAAAAT
GGCACGGCGAGACACCAAAGTTGAACGACCTTCGCGTCTTCGGCTGCACG
GTGTATGTTATGTTCCAGTCACAGCAGAGACACAAACTCAACGACAAAGC
ATGGGCGGGGGTGTTTCTGGGGTACGACGAGGACAGCCCGAGTTATCTCG
TATATAACCCGATGGGTCGTCGATATTGGGTGGAAGCGGTGCACTCGACA
GTGTACTGCCTAAATCGCGCCCCGACGCGACCGCACAACAGAGGAACGCC
GTACGAAAAATGGCACGGCGAGACACCAAAGTTGAACGACCTTCGCGTCT
TCGGCTGCACGGTGTATGTTATGTTCCAGTCACAGCAGAGACACAAACTC
AACGACAAAGCATGGGCGGGGGTGTTTCTGGGGTACGACGAGGACAGCCC
GAGTTATCTCGTATATAACCCG
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