prot_H-paniculata_contig764.15633.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig764.15633.1
Unique Nameprot_H-paniculata_contig764.15633.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length261
Homology
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BLAST of mRNA_H-paniculata_contig764.15633.1 vs. uniprot
Match: A0A6H5LIG4_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIG4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.090e-24
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 0 
Query:   72 KKPKTVRRISAADAEAFKRALEEWRVDQATQFNTRYFYILPETEVLDIVLRVPTTREQLSCIGSWRADAKLGNHGDSLLKRINSFLEERSITPNGEFSWGDQ 173
            KK +T++R+S      FK AL +WR ++A QF+ RYFYI PETE+L+++ +VP T E+L  IGSWR + KL  HG+SLL  I  ++++ +IT  G+F WGDQ
Sbjct:   82 KKRETLKRMSDEHRARFKDALIKWRDERAEQFSLRYFYIFPETELLEVIHKVPITSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 183
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BLAST of mRNA_H-paniculata_contig764.15633.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.180e-22
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 0 
Query:   76 TVRRISAADAEAFKRALEEWRVDQATQFNTRYFYILPETEVLDIVLRVPTTREQLSCIGSWRADAKLGNHGDSLLKRINSFLEERSITPNGEFSWGDQ 173
            T++R+S      FK AL +WR ++A QF+ RYFYI PETE+L+++ +VP T E+L  IGSWR + KL  HG+SLL  I  ++++ +IT  G+F WGDQ
Sbjct: 1292 TLKRMSDEHRARFKDALIKWRDERAEQFSLRYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 1389
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig764.15633.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIG4_9PHAE1.090e-2449.02HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR28_ECTSI1.180e-2248.98DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.80coord: 71..164
e-value: 1.2E-8
score: 36.9
IPR002121HRDC domainPFAMPF00570HRDCcoord: 90..147
e-value: 2.5E-7
score: 30.6
IPR002121HRDC domainPROSITEPS50967HRDCcoord: 82..163
score: 13.234
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 84..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig764contigH-paniculata_contig764:6196..17164 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig764.15633.1mRNA_H-paniculata_contig764.15633.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig764 6088..17355 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig764.15633.1 ID=prot_H-paniculata_contig764.15633.1|Name=mRNA_H-paniculata_contig764.15633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MTQMTPLKRKNRGYSQTATLEGSTDAITVDTDSTPQSEIDDDNTDSEDDF
VSLKRSKHKQSQSVRKNTRKGKKPKTVRRISAADAEAFKRALEEWRVDQA
TQFNTRYFYILPETEVLDIVLRVPTTREQLSCIGSWRADAKLGNHGDSLL
KRINSFLEERSITPNGEFSWGDQRPAAEAFPTQPDEGDETGNFAGAPWEE
EDIGMQDDDFDDDDDMDGGTNSSKFFAKGHGNDDDGNASNASAGDDEDQW
FDTEILDMHL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002121HRDC_dom
IPR010997HRDC-like_sf