mRNA_H-paniculata_contig764.15633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig764.15633.1
Unique NamemRNA_H-paniculata_contig764.15633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig764.15633.1 vs. uniprot
Match: A0A6H5LIG4_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIG4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.740e-24
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:  322 KKPKTVRRISAADAEAFKRALEEWRVDQATQFNTRYFYILPETEVLDIVLRVPTTREQLSCIGSWRADAKLGNHGDSLLKRINSFLEERSITPNGEFSWGDQ 627
            KK +T++R+S      FK AL +WR ++A QF+ RYFYI PETE+L+++ +VP T E+L  IGSWR + KL  HG+SLL  I  ++++ +IT  G+F WGDQ
Sbjct:   82 KKRETLKRMSDEHRARFKDALIKWRDERAEQFSLRYFYIFPETELLEVIHKVPITSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 183
[Close]
BLAST of mRNA_H-paniculata_contig764.15633.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.140e-21
Identity = 48/98 (48.98%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:  334 TVRRISAADAEAFKRALEEWRVDQATQFNTRYFYILPETEVLDIVLRVPTTREQLSCIGSWRADAKLGNHGDSLLKRINSFLEERSITPNGEFSWGDQ 627
            T++R+S      FK AL +WR ++A QF+ RYFYI PETE+L+++ +VP T E+L  IGSWR + KL  HG+SLL  I  ++++ +IT  G+F WGDQ
Sbjct: 1292 TLKRMSDEHRARFKDALIKWRDERAEQFSLRYFYIFPETELLEVIHKVPVTSEELCDIGSWRGNQKLATHGESLLSLIKGYIDDNNITLQGQFPWGDQ 1389
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig764.15633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LIG4_9PHAE8.740e-2449.02HRDC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR28_ECTSI1.140e-2148.98DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig764contigH-paniculata_contig764:6088..17355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue5.8e-21
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons8
Model size1082
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig764.15633.1prot_H-paniculata_contig764.15633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig764 6196..17164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.5624416-UTR-H-paniculata_contig764:6087..61951622930943.5624416-UTR-H-paniculata_contig764:6087..6195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig764 6088..6195 +
1691481521.4240818-UTR-H-paniculata_contig764:6087..61951691481521.4240818-UTR-H-paniculata_contig764:6087..6195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig764 6088..6195 +
1622930943.7115912-UTR-H-paniculata_contig764:17164..173551622930943.7115912-UTR-H-paniculata_contig764:17164..17355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig764 17165..17355 +
1691481521.5163767-UTR-H-paniculata_contig764:17164..173551691481521.5163767-UTR-H-paniculata_contig764:17164..17355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig764 17165..17355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.5772297-CDS-H-paniculata_contig764:6195..62191622930943.5772297-CDS-H-paniculata_contig764:6195..6219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 6196..6219 +
1691481521.435758-CDS-H-paniculata_contig764:6195..62191691481521.435758-CDS-H-paniculata_contig764:6195..6219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 6196..6219 +
1622930943.5900054-CDS-H-paniculata_contig764:7784..78681622930943.5900054-CDS-H-paniculata_contig764:7784..7868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 7785..7868 +
1691481521.4445908-CDS-H-paniculata_contig764:7784..78681691481521.4445908-CDS-H-paniculata_contig764:7784..7868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 7785..7868 +
1622930943.6024506-CDS-H-paniculata_contig764:8923..90481622930943.6024506-CDS-H-paniculata_contig764:8923..9048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 8924..9048 +
1691481521.4538813-CDS-H-paniculata_contig764:8923..90481691481521.4538813-CDS-H-paniculata_contig764:8923..9048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 8924..9048 +
1622930943.6218626-CDS-H-paniculata_contig764:10402..105141622930943.6218626-CDS-H-paniculata_contig764:10402..10514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 10403..10514 +
1691481521.4638898-CDS-H-paniculata_contig764:10402..105141691481521.4638898-CDS-H-paniculata_contig764:10402..10514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 10403..10514 +
1622930943.638418-CDS-H-paniculata_contig764:14759..148261622930943.638418-CDS-H-paniculata_contig764:14759..14826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 14760..14826 +
1691481521.474225-CDS-H-paniculata_contig764:14759..148261691481521.474225-CDS-H-paniculata_contig764:14759..14826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 14760..14826 +
1622930943.6556199-CDS-H-paniculata_contig764:15168..152841622930943.6556199-CDS-H-paniculata_contig764:15168..15284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 15169..15284 +
1691481521.4839122-CDS-H-paniculata_contig764:15168..152841691481521.4839122-CDS-H-paniculata_contig764:15168..15284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 15169..15284 +
1622930943.6777499-CDS-H-paniculata_contig764:16158..162101622930943.6777499-CDS-H-paniculata_contig764:16158..16210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 16159..16210 +
1691481521.492959-CDS-H-paniculata_contig764:16158..162101691481521.492959-CDS-H-paniculata_contig764:16158..16210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 16159..16210 +
1622930943.6946058-CDS-H-paniculata_contig764:16961..171641622930943.6946058-CDS-H-paniculata_contig764:16961..17164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 16962..17164 +
1691481521.5074728-CDS-H-paniculata_contig764:16961..171641691481521.5074728-CDS-H-paniculata_contig764:16961..17164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig764 16962..17164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig764.15633.1

>prot_H-paniculata_contig764.15633.1 ID=prot_H-paniculata_contig764.15633.1|Name=mRNA_H-paniculata_contig764.15633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MTQMTPLKRKNRGYSQTATLEGSTDAITVDTDSTPQSEIDDDNTDSEDDF
VSLKRSKHKQSQSVRKNTRKGKKPKTVRRISAADAEAFKRALEEWRVDQA
TQFNTRYFYILPETEVLDIVLRVPTTREQLSCIGSWRADAKLGNHGDSLL
KRINSFLEERSITPNGEFSWGDQRPAAEAFPTQPDEGDETGNFAGAPWEE
EDIGMQDDDFDDDDDMDGGTNSSKFFAKGHGNDDDGNASNASAGDDEDQW
FDTEILDMHL*
back to top

mRNA from alignment at H-paniculata_contig764:6088..17355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig764.15633.1 ID=mRNA_H-paniculata_contig764.15633.1|Name=mRNA_H-paniculata_contig764.15633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11268bp|location=Sequence derived from alignment at H-paniculata_contig764:6088..17355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGAGGGTGTCGAAGGTGGTAACGAGTGGGGGCAAGAGGAAGGGGGT
TGAGCACGCGAAGGGTGGCAAAGGTGGCGCGGATGCGGGAGGGAGTGACC
AGGGAGCAATGACCCAAATGACTCCTCTCAAGGTGCGAAGTGCGAAGGAG
TGTTTTGGCCATATTTGCGTACATGTATCGAAATGGTCTCTCCTTATGGT
TTGCTTTTTTTTATGTATTATATTAGAATAAACAGCACGTGGGTGTAATA
TATTGACGTGGCGTACATATGAGAATTTGACTGAAGCCTTCCTGTGTTTT
TGCTAGTGTTGACTGACCCCCCCAGCACTTATGTACACTATGTATTATTT
ACTGTCATTTTCAACTGGCCGGATGTCAAACAGGATACTGAGAGCGCTAT
GAGAGGTTATGACTGGCAATTGTTCACAGATGCAACGGCTATGACTCACA
ACCGTTGTAGCCGAGTCGATTGCTTAGTCGTGGCTACTTTGGGGAATTCA
TCGGTTCAGTCGACGTTATAGTCGGTTCCGCTTAAAAAAAAGTCGCTTCA
GTCGACCATGGTCCTTTCCGTCTTGAGGAAATTAGTCGGATGAGCCAACC
AAGTGCGATTGATTAGTCGCTGCATGTGTGCAATTGTTTTCGTGTGTGTC
AATTCGTCTGTTTGGGATGAATTCCGCGCGTTTTTGCCTTTCGTCTTCAA
TCTACTGGTGTAATGACAAAAAAAAACTCTCCCCTCAAGAACAAAAACGC
TCCGTCCTCTGAAGGATGCGTCCTCAATAGTCAAATAAGTAATAATACGG
CGCGTAAATGTTGGAACGCCCCCCGCCCCCCTCTCCCTTTAGACGGTGCA
GCCGCCGCACGACAGAGTGTTTCGAGGGCGAGCCCTTTCCCGTATTTCGA
GGAGATGGAACACTGAAAGAAGAAGCCCCCGTACTCGCAGTACGGTGGGT
GGGTGGGTGGGTGGAAGCGAGGGACTCTCGTGATTTAAAGAGTTCACCTG
CTAATACCCGATTTCGGCGATACCCGATATTGTTCTGCGGCCAAGGTAGA
TAAGTGTAACGTGCTAATTACCCACGAAAAATATTTTTTCAAGGATGGTG
AATATTCATATACCTGTTCGTTCGGGTAAACTTGCCAACCAGCTGTTATA
GAACCACCCGCTCCCCTCGTGTGCGATGCATGTAGTATGTCAACGGCCAG
CCAATCCGAACTATTGAACGCGCACATCAAACGAAAATTCGTATTTGCAT
TAGTGTCAACCCCCCTTTTGTTTTCCATGTAATTCTGTTGATAGTTAAAG
TTTACCCAACTGATGTTTGAGATCAGCTCTACAACCTCAAGCTGGGACCA
TAGAGTCATTGTATAAAGGTTAGAGCTTAGTTCGTTCTACTAGCTATGGC
AGGTGGGTTGACTTAGGAATGAGAATTCCGGTCTCCTGTTTTGGTTCGGT
TTGTGGATAATAACATATAACAAGGAGTCCAGCAGCTTTTTCATAGTGTA
AATGCCATCCTCCTGATGAAGCTGTTCTTGGCAATTGATGCGTATAATCA
TGTCGCTACGCTGTGATCAGTGGTAGATTTCTTGCTCCTGCATGAAGTGC
TGAGCCCCCTCCCCCGCTTGTTGTGTTGTGTTCTGTTATATCCTGTTCTA
TTCCCGCCGCGTGATATCCTGGAAAATAACGAAAACGACTATGGCAGAGG
AAAAATCGGGGATACTCCCAAACGGCGACGCTGGAGGGATCAACCGATGC
GATCACCGTCGATACCGACAGCACTCCGCAGGTAAGAACAAAATACCATC
ATAGTTGCTGCCGAAAGCGAATATATATATATATATATATATATATACAT
ACATATAAGTGAACGCTTTTCAAAGTTACCGTTGGGACAGGGGGGGCAAG
GCGTGGGCAGAGAGTCATATCAAGGTTTGTGCAGCTGCTGCCGAAGCTTT
GTATAATCATAAGCGACCTATATCATACGTTGGATAAACGCCGAAGTGAT
GAAGATAATCACAAAGTTTGGAACATGAGCATGACAGAACTATAGGATTT
TCGGTGCCTCTCTTCCAGAACCCCTGTTTGAATCGATTGATATCATCAAA
GAAAATCCTTCTTTCTTCTTTCATATGATGCAATCTTCGATTTTTGAGCA
CCAGCGCACCTCCACAGATTTTCTGCTTTTGTCAAGATTGGATTGGAAAC
TAGTTGGCCACAGGTTTTTAAGATTCTGTGAAAAAACAAGATATTGGAAG
TAATAGCCCCTCATCCGAGTTGTGACCTTTGTATGTTTACATATATATAT
ATATATATATGTAATGCGCTGATATGAGGAGACTTACTTAACCATAGTTG
GAATACGCAAGAGAAGTTGGACGGCGTGATCACATGACATGGCCAACGGA
GTACATGCCCGAGTATATTCGGGTCCTAAACAGGTACGGACCCAGCGTTG
TACGTTTCGCCACACATATATTCGGGAAGCTGGTTGGCCACAACAGCCTC
AACATCTGATGGTAGGGACCAAAAATACCCACAAGTGTACGTGCGTATGT
TCACGTTTCCCCCCAAGGTATGCACCTTTTTGTGGACCAGAGGCAAGAGT
CAAACGCAGTCAATGGGTCGTGTCATGCGACACGAGTGATCTTTTCTGTG
TCTTTCGCGCTCTCCTTTTAGTATTTCCCTTAGAGGTTCCCTTGTTTGTA
GCGGATTCTAGCATTCTAATTGTTCCACTGACTACACGCCCTCTTTGTCT
GTCGTTTATCTTTCCCTCAAACGACCAACGTTGCGCGTGGGACCTTATCT
TTTATCCTGGATTATGACGTCGTTGATACGCGGCAGAGCGAGATAGACGA
TGACAACACCGATAGCGAGGACGACTTTGTTTCCCTCAAAAGGAGCAAAC
ACAAGCAGTCCCAGTCTGTGCGGAAAAATACTCGCAAGGGAAAGAAGCCG
AAGACAGTCAGGTAGAAGGAGGCGTTACTTTTTCTTCTTTTTTTTTTGCG
TCATTTTTCGGGCACCGGAACCATATTTAGCGAAGGCGCAAAAAAGACAA
AATGGAGCATGATAAGCACGCGCATAATAGAGTATGACAAATGCACACGA
TGGAAAGTATGCGACTGTCTTGCCATGTGTCAGTGTTGTGGTTCACTCCG
ACTATCCTCTCCATGAGGTTTCTGTAGCGTCAGGTGTTTGATTGAGGTAG
TGTAGAGTTGGAGGAGATAGATATACGGCGTACGCTTTATTCAGAATTTC
TCACATACTCCTTTGTGTAGATTTGTTATACTTCATCATGCGTTTTTTTA
TTGTCATGCTTCATTTGGTTGAGCTTGAATCATTTCTCCGTGTGGGGTGT
GTGTGTTCCATTCCTTCTCGTATTAGTCTGTCAATGGATCATCGCGACCC
GTTGGTTCGAAGTCTGGAGTGCAGTGCAATGCCTCGATACAGCCGTCCCA
CTCGCTGGCCAAAGTTGGAATTGACAGCGGTATGCTCTGACCAGTATTTC
TCCTCCTTTCCGCTGCAGATAGTTAAACAATGCCCTGTTCATTACCTCGC
TTGTTCCCGCAGAAGTTTGGGCAGATGAGCTATGTGTTGATGGAAAATGA
TTTTTCATTCAATCTAAGACCATCCGGGGCCACACGGCCATGCTGAGCGT
GTCGTTGGCTGCGTTTGTCAATATTCCATTCGGCGTGTTTTTCGAAGTAT
GTCTGCGTGTGGTGTGCAATACCTGGTGGAGAAATGGTAAATGCATCATG
TATCAATGCATGATGGATTTGACATGTGGGAACTTCTATCATCTCGTCGT
GTGTCAGGGAAATTTGACTAATTGGTTGCGAAAGAACAAAAACTTCGTTT
CTGAACGCTCGTGAAAAGCGACAAGACGGGACGAGACGAGAGTGACCGGG
ACGGGATTCCGTTGGTTTATTTTTCAGGGTGTGAACTTGTCCTGTCGAAA
TTTCAAAATCCACTTTTCCCTTCCTATATCCCCATGAAAGTGACTTGAAT
TTATACCTCCTCCAGCGGTTGAATTGGTGCATGTGCTGTACAATAGTAAA
AACAAGTGTTCCGTTGGGTTTTTTTAAATCCCACCTTCGCGGAGACTATC
ACCAGACCTATGCTGTCATGAGTTGGTCACTCCCGCCAGTTGGCATTTGT
TTATATATATGCCAATTCTAGATATATAGATACCTTGCTGCACTGCATAA
ATTTCAAGCATCGAATGTTGTGCTTGTGAAAAGCACCATCTCATGTCAGA
TCGGCTTTAGGTGTGATGACTGATTAAATTTTATGACCGCATGTCGTCCT
GAGACCATTCTCCAGGCGGATAAGCGCTGCAGATGCAGAGGCGTTCAAAC
GGGCGCTGGAGGAATGGCGCGTGGATCAGGCCACTCAGTTCAACACCCGT
TATTTCTATATTCTGCCGGAAACAGAGGTCCGTGTGCATGTGTTTGTGTC
AGAGCATTAATCATGGTGTGGGGGTATAATAATATTTGCCTTGTGATTTA
TATTCAGTTTCGGATATGACGATTTTGCGAATCTATACGTGTAGGACTTG
CCACACATTTTCAACTCCAGAAAGAGATATTTCGACGTATGTAAGGTCAT
GAACGGAGAGAACGTTCATGGTGAACAAAAAACGGTTGGTTCTTTACGTG
CAGTAGTTGTCACATGTGAGTGCACGTGGTCTTGTTTTGCGATGTCTTTA
CTGGAAAGAAAATAATTACTTCCCTAAAGGCGTGTCTGCATGTCTCCCAA
ACGTTCGCTCCTGCCCGACTGTCGGTACTTTAGCGAGCACCGATACGTAT
CGCAAGATCGCGAGGAAGGTTGCTGTATATCCACGTATTTCTGTTATATG
ATAGACCTGCGATAATGGTGATAATGATGATCATGATCATGGTGATGATG
GTCTTGCTTTTAGAACAGTCTGTAATTTCTAACTCTCGTAACACACCGGA
CAGTTCATTTTTGTGTTCATTTTTCCGTTGTGACCTATCGTGGTGGGGTG
CATGGGTCATGGGTTTGGCTTCAACGAGCACAAGAACAAAATATGAAATC
CGCTAGCGTAGCCATGGCTATACTTGAGCGAGAAAAAGGCGCTATAATTC
CGACTATGTAAAGTATATGTAAAATTCTGCGTCTGACTCGTCATGCCAGC
ATTGCAAAGTAACTCTGCATTGCGGTCTGTGACTCTGACTTCATTCATCT
ACATGTACACTACACACCTGTACTGTTGGCGCTAGGTAACAACACGAATC
TCTTTTCACATAACATGGTCATGTGACATAAGATATACTCTGTACGATAT
TAGCAATTAGATGCAGGAAGGCGATAATAAAAACGAGTAGTTGAACAGAA
AACACGACCCGACATGGAGACCAAGCGATGCCGGCGCCAACGTGTGGTTG
GCGTGAGGTTCTCACTGTCGCTAGACACAAGACAAAACTCTGTTGGACAG
TGACGATGGAAAATATGTATTTTGTCTCAAACTTTATTGAAATGACCACC
CACTGTACGATACGAGAGGTTGACAGCCGCCACTTGGACTGGTTACCCTT
CAACCAGAGCGTGTGGAACCCTCTGCAGCTACTTTAGCTAGCTAAATAGC
TAGCTAGCGCCAACGTCAAGGCGGCCGTGTGCATCTCTGCCACCAATCCT
TGAATACGCTATGCCACAGAAGGCGCTATCAACAAGACCACGTTCGTTTG
ACAGGAAATTACATGGTTGGAATAGAATGAGATGCTACCTGTAATTAGTA
TCCCGAGCACGAGACCCAAATCATGCATTTATTCTTGACTCCCGTCCGAC
TTGGAGGCAAGGGTTGCATTATTGGACCGATCCGGCGACAGTTATGCACC
TATCGGCGACACTTTCCGAACGTATCGGCAGCAGTTTCCGAACTGTGAAC
GAAAGTTGGAGACACTTGGAGAATCATCGGAAGTGTCGCCAAAATACCCT
CAAAAGTGTCGCCAAAATACCCGGTCACATTGGTGGTACTTGTGGAAATG
TAACACGCATCGTCGACAACGTTGTGCTTGTTCGACAAAACCCTCGGAAG
TGCGGCTGGTAGCGTCGTTTGCTTCGGTGTCATACCGGCAACAGTACTAT
CAACGGCATTTTCTGGGGGTAACACCGATAAATAGGACGCTATCAGCGGC
ACTTTCGATGGTATTGCCGACATATACGACCTTGTCGACGACGCTTCCGG
TGACGTCCGCGACACCTCGACATCCATGGAAATGCCGCTTGACTTTACTA
TTTTCTCACCCCCCCCCCCCCCCAACCCCCCCCCTCTGGCTATCGCCGAC
ATCCGAAGTGTTGCGGACAGTTAACCGTAACCCTAATTCCCTGAGTGTTC
ATGGAATAGAGGAGAAAATACATATATCTCCTACACTTTTGAAATTATTC
GCTATGTATTCTGACTTGCACGGAAGTGTCGGCGGCAATAGTGCGGGTGG
TGTCGATGACACTTCGTCCGTATCGACGATACGTGTTGAATTATCGCCGA
CATGTCCAACATCTCGACAGCTGTTCCTAATTTGCCAGCGGAAATTCCGA
AACTGTCGCCAATTGGTACGAAGTATCGGCAATAGGAGATAGTGGCAGAA
GGTTTACTTTGCAATTTCTGACATCGTTGATCACAACAGACGGACATGAA
TAACGTCACTGACTGAATGGTGAATTACTTCTTCTGTGCCACAAGTAAAG
TCCATTGAGTATGTAGAGGCACCTAACCATCGATTTTTTTTTGGGTTACA
ATCCTACGTTTTGGGGGGGTCAATCCCCAGAATTTCACGGAAATTGGTGA
AATCCATCGGGAGCGCCCGTGGCGTAAAAATAGATATCCAATAAAAGGCC
ATGTTTGCCCCCGAAAAATAAAAATCGAAACAAAAATCGAAAATACGAAT
TAGTCGAAGAGGCACTTGCTAATCTATTCCCCCTCGTTGTTACTGTGAAG
GCAGCTCTCGGCTCCGCTTGCCGCGTAGAGGCGTGTTTATGGGCGAATCC
ACGGTTTTTGTGGGTTTGTGGGCGCTGATGGTCGGGCGATAAACCGGCCA
AAAATAACCAAAAACGGATCAACTTTGACTCGAGATTTTTTCGGAACAAA
TTATCGGAATCGCAACTCGAAATGTTTTATAAGAATGGCTTTTGCTCTAG
GTTTCCAACGATTCTATCCGCAGTCTTTGAAAAGAATTAGATCTGGAGCG
ACTTTACTAATGGCACAGAGAAAGTATGTTGTTAGTGTTTTGTCGAATTG
CAACCAGCGAATGTATATCGTAACGTCGGGGGTTGCTTTCGTGTGGGTTC
AGGTTGTCGGTTGTTGGTTGTTTTTGTTTGTGGCTTTCAAGGAGCTTGTG
ACGTGTTTGGGGTTGACGTATAGGACAAATATTCCCACGGGTACGTCAAC
GTAAGAATTTTCGCAGAAGCCTCCCCTCATATTGTGTACAACACAAAAAC
GGCCTCCTCTACTAACTCACATGGTCTGTAGGCACACACACGGTGTCTCC
GTGACGAGAGAGATTCATTTTTTCAGAATATACTCTCAAGTACAGACTTG
GGCAACCTGGTGCGAGAAGGCAGAACACGACCATGGCAACCCACCCCGTC
GCACTACCCTTGTTATTGAACATGGTGAGGCCGTCGTCCTCATCATCGTC
ATTTTGGATCTTTTTGTCAAGCCTCTATTCAAGTAATGTCTTACGAACAA
AACGTTTCATCCCCCGGACAAATACGAATAATTGGCGTATTCGCCACGAA
AATTAGCAAGTATTCGTATGAGTTTCAGAATGAGCGGATACATACAATAA
AGTACCCACCCCTGTCCATTCAATTTACGAGTATTATTAGCAGCCATGGA
TGGTACGGGGCACATAGAATACGCGAGCTCATTCTGAAACTCAGGCGAAT
ACTTTGTAGTTTTTGTGGTGAATACGCCAAATATCCGTATTTGTTCGGGG
AGGGGAATGTTCGTGGACGTTGTATCTGCTTACGAGCGTAGCAAGCCACT
GCGAACGACGTTTTGGTATTGTGCGGAAGTCGAGGACAAACCAATAACTG
ACTGACTGACTGCGTAGGCGTAGCCACGGCTCTATCATTAGAGTAGTGAA
AGAGGGGGAAACTAGTGTTTAAAGGGTTCAAGTCCTCGCTAAATGCTGTA
AACATCGTATGCTTTTAGTTTGATGTTTACTGCCTGCCGTTCAAAGATTA
TTTTGGGACGGCATGCTTTTTCCTGTCAATCTTACCTCCCTATCCGCGTG
TCCGCGTGCGGGTTTCCTAAAGAAACGTGCCGTTGGAAGGAGAAATCTTA
CTTGAAAGCCACACGGGAAAAAAAAAAAGACACCCATGGCCTCATAGCAT
GGGCGCAGGGAGGATCACGATGCCCTGCGCAATGAAGGCGTTCGTTTGGC
TTGTTGTTTCCTCCTTCACGTATAGTATCCAGGTGTCGCAGGCAGTAGCT
GTGCGGATGAATTGACTGCCTTACGGAGGTGTTTCACAGAGTTGTAGCAT
AACGATGGGGAAGTAGATGAATTTTCAATATTGCGTCTCGAGATAAAGGT
TGAGCTAGCTTTGGCCCGTTTGTTGGTCTGATCTTTCCCGCCCTGTCTGT
CGCGCTGTCTATCTCCTGTGTGTGCCTGTCTTCGGGTCTACTGTCATCGT
TCAACCGATACCGCAAAAATAGGTCCTCGACATCGTGTTGAGAGTGCCCA
CAACACGGGAGCAGCTTTCCTGCATCGGGAGCTGGCGAGGCAAGTGTCTA
CGTGTGTGTATGAGTATGTGTATTTTTTGTAGATAAAATTACCCTTGCCA
ATGCCGACCGCTGTCAGAAAACTTTGTGTGATACCTAGTCTCCGTCTTCG
ACCAGGCTAACTGCATACTCGTACACGAAGAACCAGCGATCCTTCGGGTT
CTTCTTTTCCCGCTGGAGCGCAACCAAGCTTCCGGATTAGCGTTGAAAAA
GTTCGTTGATACGGTAGCACACAAACATGACCATCTATAGTGGGTGAGCA
GGGTGAACGTGAACTTTCCAACACCCCGCACTACCACACGCCTGTCCTCT
GTCCTGTTTTACCATCTGACCTGTTGCGCAGCGGACGCCAAGCTCGGCAA
CCACGGGGATTCCCTTCTGAAGCGGATCAACAGTTTTCTGGAAGAGCGAT
CCATCACTCCGAACGGCGAATTCTCTTGGGGGGACCAGAGGCCGGCGGTA
AGAGAGCGTCGGGCTTTTCAGCATCGTCGCGGAAGCTATAGTCATCATAT
AATTTCTGTAGCCTCTCATTGTCTTGGTCACTGCTCTTTTGAGACTATGC
CACCATCAACTCCACCGCTGACGGGCAAGGGAAACTGCTGACCCCATGGC
GCGGTAATACAGGTGAAGAACCGAGGCACTGCATGCACTCCCAGCTTCGG
ATGGGCCACCCTTCCCAATCAAAATCTGCTGTACGAAAGCTACGCCCGAT
CGCTCACCCTTCTCCTCAACACGTTCATTTATCGATCTCCCATGATTGGA
TATTGTCCCATAGACAGTGGGTAGGGTCGAGTCTGAGCCGTGTCAAATAG
TATTCCATTCAATGTGACTACTCTATTTCAGCGTGATACCCGAGGCTTCT
TATGTCTAACTTGTTTTTGTTCACATAACAAAGAAGGGTTTCTTTTTTTT
GGCCAAGAAAAGTAGCCAACCGGTCCCCGGTGCGGTTCTGTGTAGTGTTT
GTTTGGTCCTAACCAAGTTCCACCGGATTTTGTTTCGTCAACATATTCCG
GGTCATTCCACGTGTCACGTGTTGGGAGTCGTGGTTCATTTGCCTGATTG
CGCCGGCCGTATTATGAAAAGCCTTGGTTATTGCAGACTGCCATTCCTAC
AAGCGAACGTAACCTCCGCCCCCTTCCCGGGTTTATGTATTTTTTGCTGA
GAGGTGTACACAACTGAGATTAAAGGCTAACATGATCTCAACATGGGTAC
GATGGAAGGATTATACAAGCGTTTAAGATGTACCAACTGTGGTAAGTGGT
TTGACTTACAAATGACCCCACACACACAACCCCCTGCCCATCCCGCCCCT
CCCATGTGTATGTGCCGAAAGGCTGAAGCCTTTCCGACGCAACCAGACGA
AGGCGACGAGACAGGAAACTTCGGTAAGCACCCGTCCACTAAAAACTCAT
GTGAACTCGTTTCGTCTACAGCAATTTCTTGCGAATTAATTCTCTTCTCG
AGAATGCAGCGCAGGCGTCTTTTGAAAGCTTGAAGTCTTCGAAAGGTTTT
TTTTCTTTCGGCCTTGAAACCAATTCCAACGAAAAAACAAGCGGACAGTA
GAGGTATTTTTTTTGTTTGCTCAGCTCGGGTTGCTGGCTTTTTTTTTCTT
TGGTACCTATGTCATTTTGTTCTTGTATTGTATGCCCTGCACTTTTTTCG
TTCGTCACTTCGTAGGTGGTACACACCACAGATTCCCATGTGCGCTAGAT
TCTCGTGAGTCTAGCAATCTAGGGAGGGGCGGCCGACCCCACGCACGTCT
GCGCCCTTCCTTTAGCCGAGAATACCTCTTGTTTTGCGAAGAGGAAGTTG
TCGCGTCTGTCTTTAGAGCCTGCGGCACCGAGAATCACCTAGGCAATTGA
TGTCATAGAAAGAGATTATTTATTACCTACACCACTGCTATTTGATTATT
TTCCATCTAATCCCGTCTCCCTGAACGAGGTCGCCATAGGTTTTCGAGTT
GTCCCATTTTCCTAATATCTGGTCATTTTCGTGCAAAAATGGGTGCAGGT
CGTGTCGATGGTTCATCGGTGTTTTTTTCTATTAGATCAAGTATACCCAA
GTACATTTTCGTCACTGTTACACCGTAAGCCCTCTTATCACGCTTCCTCT
GCGTATTTTTTATACATATCGTAGCAGGTGCGCCGTGGGAAGAAGAGGAC
ATAGGCATGCAAGACGACGACTTTGATGATGATGATGACATGGACGGGGG
AACCAATTCTTCCAAGTTCTTCGCCAAGGGCCATGGGAATGACGACGATG
GGAATGCCTCAAACGCTAGCGCTGGTGACGATGAGGACCAGTGGTTCGAT
ACCGAAATACTAGACATGCACTTGTGATCATGATTTGCCGCGATGCTTTT
CTCTCCGTCTCTTGGTCCCTCGGTCTCTCGACGTTAATGATTATTAGAAT
GTACAAATGAGCGGGCTGTGTGTAACACCAACGTTTTTCGGAGCATTTTG
GATGTAATGTTGTTTTGCCTTGTCTTGTCTTGCTTTGTGTCCCGTGTGTG
CTGAGGGGAGAGGAGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig764:6088..17355+

>mRNA_H-paniculata_contig764.15633.1 ID=mRNA_H-paniculata_contig764.15633.1|Name=mRNA_H-paniculata_contig764.15633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig764:6088..17355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCAAATGACTCCTCTCAAGATGACCCAAATGACTCCTCTCAAGAG
GAAAAATCGGGGATACTCCCAAACGGCGACGCTGGAGGGATCAACCGATG
CGATCACCGTCGATACCGACAGCACTCCGCAGAGGAAAAATCGGGGATAC
TCCCAAACGGCGACGCTGGAGGGATCAACCGATGCGATCACCGTCGATAC
CGACAGCACTCCGCAGAGCGAGATAGACGATGACAACACCGATAGCGAGG
ACGACTTTGTTTCCCTCAAAAGGAGCAAACACAAGCAGTCCCAGTCTGTG
CGGAAAAATACTCGCAAGGGAAAGAAGCCGAAGACAGTCAGAGCGAGATA
GACGATGACAACACCGATAGCGAGGACGACTTTGTTTCCCTCAAAAGGAG
CAAACACAAGCAGTCCCAGTCTGTGCGGAAAAATACTCGCAAGGGAAAGA
AGCCGAAGACAGTCAGGCGGATAAGCGCTGCAGATGCAGAGGCGTTCAAA
CGGGCGCTGGAGGAATGGCGCGTGGATCAGGCCACTCAGTTCAACACCCG
TTATTTCTATATTCTGCCGGAAACAGAGGCGGATAAGCGCTGCAGATGCA
GAGGCGTTCAAACGGGCGCTGGAGGAATGGCGCGTGGATCAGGCCACTCA
GTTCAACACCCGTTATTTCTATATTCTGCCGGAAACAGAGGTCCTCGACA
TCGTGTTGAGAGTGCCCACAACACGGGAGCAGCTTTCCTGCATCGGGAGC
TGGCGAGGTCCTCGACATCGTGTTGAGAGTGCCCACAACACGGGAGCAGC
TTTCCTGCATCGGGAGCTGGCGAGCGGACGCCAAGCTCGGCAACCACGGG
GATTCCCTTCTGAAGCGGATCAACAGTTTTCTGGAAGAGCGATCCATCAC
TCCGAACGGCGAATTCTCTTGGGGGGACCAGAGGCCGGCGCGGACGCCAA
GCTCGGCAACCACGGGGATTCCCTTCTGAAGCGGATCAACAGTTTTCTGG
AAGAGCGATCCATCACTCCGAACGGCGAATTCTCTTGGGGGGACCAGAGG
CCGGCGGCTGAAGCCTTTCCGACGCAACCAGACGAAGGCGACGAGACAGG
AAACTTCGGCTGAAGCCTTTCCGACGCAACCAGACGAAGGCGACGAGACA
GGAAACTTCGCAGGTGCGCCGTGGGAAGAAGAGGACATAGGCATGCAAGA
CGACGACTTTGATGATGATGATGACATGGACGGGGGAACCAATTCTTCCA
AGTTCTTCGCCAAGGGCCATGGGAATGACGACGATGGGAATGCCTCAAAC
GCTAGCGCTGGTGACGATGAGGACCAGTGGTTCGATACCGAAATACTAGA
CATGCACTTGTGACAGGTGCGCCGTGGGAAGAAGAGGACATAGGCATGCA
AGACGACGACTTTGATGATGATGATGACATGGACGGGGGAACCAATTCTT
CCAAGTTCTTCGCCAAGGGCCATGGGAATGACGACGATGGGAATGCCTCA
AACGCTAGCGCTGGTGACGATGAGGACCAGTGGTTCGATACCGAAATACT
AGACATGCACTTGTGA
back to top