prot_H-paniculata_contig7397.15371.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7397.15371.1
Unique Nameprot_H-paniculata_contig7397.15371.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length70
Homology
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.840e-30
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 0
Query:    1 MMSNVRSSHGVLITCDVPTKKFILSLDARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVRPR 69
            M +  RSS GVLITCDVPTK+FI+SLDARL+CVVSDLD TH+FVKK SVKEIQ EL +LHE+NVYVRPR
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 69          
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.540e-16
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 0
Query:    2 MSNVRSSH-GVLITCDVPTKKFILSLDARLS--CVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVR 67
            MSNVR+S  GVLITCDVPTK+FIL L+++ +   +++DLD+TH+FV+ ++V EI+ +L  L E NVYVR
Sbjct:    1 MSNVRTSRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69          
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 57.8 bits (138), Expect = 4.250e-9
Identity = 26/64 (40.62%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    5 VRSSHGVLITCDVPTKKFILSLDARLS--CVVSDLDDTHMFVKKASVKEIQHELNELHERNVYV 66
            V ++ GVLI+CD+P K+F+L +D + +   ++SDLD+TH+ VK++++  I+ +L++L+E N Y 
Sbjct:   48 VTATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQYT 111          
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A383WPN6_TETOB (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB)

HSP 1 Score: 55.8 bits (133), Expect = 9.570e-9
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 0
Query:    5 VRSSHGVLITCDVPTKKFILSLD-----ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVRP 68
            V ++ G L+TCDVPTK+F++ L+      + + ++ +LDDTH+ VK+  V+ +Q ++   + +NVY  P
Sbjct:    2 VNATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70          
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 55.1 bits (131), Expect = 1.710e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    9 HGVLITCDVPTKKFILSLD---ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVY 65
             GVLITCD+P K+FIL LD   A    V+++LD+T +F++  ++K +Q +L EL+E N +
Sbjct:    6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEENYF 65          
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 53.5 bits (127), Expect = 6.930e-8
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    7 SSHGVLITCDVPTKKFILSLD---ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVY 65
            ++HGVL+TCDVP K+F+L LD   A    +V+ LD+TH+F+   +V  I+ +L  L   N Y
Sbjct:    4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G710_ECTSI2.840e-3078.26General transcription and DNA repair factor IIH su... [more]
A0A835ZC95_9STRA1.540e-1656.52General transcription and DNA repair factor IIH su... [more]
A0A2V3IN38_9FLOR4.250e-940.63General transcription and DNA repair factor IIH su... [more]
A0A383WPN6_TETOB9.570e-936.23General transcription and DNA repair factor IIH su... [more]
M2VWH3_GALSU1.710e-845.00General transcription and DNA repair factor IIH su... [more]
A0A1X6PEZ7_PORUM6.930e-843.55General transcription and DNA repair factor IIH su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 4..67
e-value: 7.8E-16
score: 68.6
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 5..66
e-value: 7.8E-22
score: 77.1
IPR009400TFIIH subunit TTDA/Tfb5PANTHERPTHR28580FAMILY NOT NAMEDcoord: 5..68
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 1..67
e-value: 6.2E-20
score: 72.5
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 9..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7397contigH-paniculata_contig7397:5892..9492 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7397.15371.1mRNA_H-paniculata_contig7397.15371.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7397 4939..9631 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7397.15371.1 ID=prot_H-paniculata_contig7397.15371.1|Name=mRNA_H-paniculata_contig7397.15371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MMSNVRSSHGVLITCDVPTKKFILSLDARLSCVVSDLDDTHMFVKKASVK
EIQHELNELHERNVYVRPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009400TFIIH_TTDA/Tfb5
IPR035935TFB5-like_sf