prot_H-paniculata_contig7397.15371.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI) HSP 1 Score: 110 bits (274), Expect = 2.840e-30 Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 0
Query: 1 MMSNVRSSHGVLITCDVPTKKFILSLDARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVRPR 69
M + RSS GVLITCDVPTK+FI+SLDARL+CVVSDLD TH+FVKK SVKEIQ EL +LHE+NVYVRPR
Sbjct: 1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 69
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 1.540e-16 Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 0
Query: 2 MSNVRSSH-GVLITCDVPTKKFILSLDARLS--CVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVR 67
MSNVR+S GVLITCDVPTK+FIL L+++ + +++DLD+TH+FV+ ++V EI+ +L L E NVYVR
Sbjct: 1 MSNVRTSRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR) HSP 1 Score: 57.8 bits (138), Expect = 4.250e-9 Identity = 26/64 (40.62%), Postives = 48/64 (75.00%), Query Frame = 0
Query: 5 VRSSHGVLITCDVPTKKFILSLDARLS--CVVSDLDDTHMFVKKASVKEIQHELNELHERNVYV 66
V ++ GVLI+CD+P K+F+L +D + + ++SDLD+TH+ VK++++ I+ +L++L+E N Y
Sbjct: 48 VTATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQYT 111
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A383WPN6_TETOB (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB) HSP 1 Score: 55.8 bits (133), Expect = 9.570e-9 Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 0
Query: 5 VRSSHGVLITCDVPTKKFILSLD-----ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVRP 68
V ++ G L+TCDVPTK+F++ L+ + + ++ +LDDTH+ VK+ V+ +Q ++ + +NVY P
Sbjct: 2 VNATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU) HSP 1 Score: 55.1 bits (131), Expect = 1.710e-8 Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query: 9 HGVLITCDVPTKKFILSLD---ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVY 65
GVLITCD+P K+FIL LD A V+++LD+T +F++ ++K +Q +L EL+E N +
Sbjct: 6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEENYF 65
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM) HSP 1 Score: 53.5 bits (127), Expect = 6.930e-8 Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 0
Query: 7 SSHGVLITCDVPTKKFILSLD---ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVY 65
++HGVL+TCDVP K+F+L LD A +V+ LD+TH+F+ +V I+ +L L N Y
Sbjct: 4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 6
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig7397.15371.1 ID=prot_H-paniculata_contig7397.15371.1|Name=mRNA_H-paniculata_contig7397.15371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bpback to top |