mRNA_H-paniculata_contig7397.15371.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7397.15371.1
Unique NamemRNA_H-paniculata_contig7397.15371.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 7.490e-27
Identity = 54/69 (78.26%), Postives = 61/69 (88.41%), Query Frame = 2 
Query:  140 MMSNVRSSHGVLITCDVPTKKFILSLDARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVRPR 346
            M +  RSS GVLITCDVPTK+FI+SLDARL+CVVSDLD TH+FVKK SVKEIQ EL +LHE+NVYVRPR
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 69
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BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.360e-14
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 2 
Query:  143 MSNVRSSH-GVLITCDVPTKKFILSLDARLS--CVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVR 340
            MSNVR+S  GVLITCDVPTK+FIL L+++ +   +++DLD+TH+FV+ ++V EI+ +L  L E NVYVR
Sbjct:    1 MSNVRTSRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69
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BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 58.9 bits (141), Expect = 3.290e-7
Identity = 26/63 (41.27%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:  152 VRSSHGVLITCDVPTKKFILSLDARLS--CVVSDLDDTHMFVKKASVKEIQHELNELHERNVY 334
            V ++ GVLI+CD+P K+F+L +D + +   ++SDLD+TH+ VK++++  I+ +L++L+E N Y
Sbjct:   48 VTATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQY 110
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BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A383WPN6_TETOB (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB)

HSP 1 Score: 57.0 bits (136), Expect = 5.720e-7
Identity = 25/69 (36.23%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:  152 VRSSHGVLITCDVPTKKFILSLD-----ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVYVRP 343
            V ++ G L+TCDVPTK+F++ L+      + + ++ +LDDTH+ VK+  V+ +Q ++   + +NVY  P
Sbjct:    2 VNATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70
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BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 56.6 bits (135), Expect = 6.880e-7
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 2 
Query:  152 VRSSHGVLITCDVPTKKFILSLD---ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVY 334
            V    GVLITCD+P K+FIL LD   A    V+++LD+T +F++  ++K +Q +L EL+E N +
Sbjct:    2 VNLLRGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEENYF 65
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BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 55.1 bits (131), Expect = 2.410e-6
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 2 
Query:  155 RSSHGVLITCDVPTKKFILSLD---ARLSCVVSDLDDTHMFVKKASVKEIQHELNELHERNVY 334
             ++HGVL+TCDVP K+F+L LD   A    +V+ LD+TH+F+   +V  I+ +L  L   N Y
Sbjct:    3 EATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7397.15371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G710_ECTSI7.490e-2778.26General transcription and DNA repair factor IIH su... [more]
A0A835ZC95_9STRA4.360e-1456.52General transcription and DNA repair factor IIH su... [more]
A0A2V3IN38_9FLOR3.290e-741.27General transcription and DNA repair factor IIH su... [more]
A0A383WPN6_TETOB5.720e-736.23General transcription and DNA repair factor IIH su... [more]
M2VWH3_GALSU6.880e-743.75General transcription and DNA repair factor IIH su... [more]
A0A1X6PEZ7_PORUM2.410e-642.86General transcription and DNA repair factor IIH su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7397contigH-paniculata_contig7397:4939..9631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1302
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7397.15371.1prot_H-paniculata_contig7397.15371.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7397 5892..9492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.7422476-UTR-H-paniculata_contig7397:4938..58911622930905.7422476-UTR-H-paniculata_contig7397:4938..5891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7397 4939..5891 -
1691481504.6684868-UTR-H-paniculata_contig7397:4938..58911691481504.6684868-UTR-H-paniculata_contig7397:4938..5891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7397 4939..5891 -
1622930905.7946248-UTR-H-paniculata_contig7397:9492..96311622930905.7946248-UTR-H-paniculata_contig7397:9492..9631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7397 9493..9631 -
1691481504.7096312-UTR-H-paniculata_contig7397:9492..96311691481504.7096312-UTR-H-paniculata_contig7397:9492..9631Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7397 9493..9631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.7576077-CDS-H-paniculata_contig7397:5891..59431622930905.7576077-CDS-H-paniculata_contig7397:5891..5943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7397 5892..5943 -
1691481504.6786954-CDS-H-paniculata_contig7397:5891..59431691481504.6786954-CDS-H-paniculata_contig7397:5891..5943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7397 5892..5943 -
1622930905.7695532-CDS-H-paniculata_contig7397:6831..69451622930905.7695532-CDS-H-paniculata_contig7397:6831..6945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7397 6832..6945 -
1691481504.68774-CDS-H-paniculata_contig7397:6831..69451691481504.68774-CDS-H-paniculata_contig7397:6831..6945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7397 6832..6945 -
1622930905.78109-CDS-H-paniculata_contig7397:9448..94921622930905.78109-CDS-H-paniculata_contig7397:9448..9492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7397 9449..9492 -
1691481504.7000575-CDS-H-paniculata_contig7397:9448..94921691481504.7000575-CDS-H-paniculata_contig7397:9448..9492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7397 9449..9492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7397.15371.1

>prot_H-paniculata_contig7397.15371.1 ID=prot_H-paniculata_contig7397.15371.1|Name=mRNA_H-paniculata_contig7397.15371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MMSNVRSSHGVLITCDVPTKKFILSLDARLSCVVSDLDDTHMFVKKASVK
EIQHELNELHERNVYVRPR*
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mRNA from alignment at H-paniculata_contig7397:4939..9631-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7397.15371.1 ID=mRNA_H-paniculata_contig7397.15371.1|Name=mRNA_H-paniculata_contig7397.15371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4693bp|location=Sequence derived from alignment at H-paniculata_contig7397:4939..9631- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAATGCCACTTTTGCTCTTGCTAGGCTGTTCTGCTATATGCCTCATTA
CAGAGAAAGGCATTTCAACAACTGCAATTGTAGAGAGTGCAGCTTGTGCT
AGTGAGGTATTTGCCGTGCTATCTAAGTAACCGGTGGGGATGATGAGCAA
TGTTCGAAGCAGCCACGGCGTGCTGATCACATGGTGAGAGAGGTCACTGA
TGGATATTCCTACTGGTGGTACTGTGTGTGTACCGCGTGTTCTTTGACAA
AGTTACAGATGTGGGTAACCTTGATTGTTCCACCGTCCGATAGGTTTACG
GTGCTTAGCCGTGAGGAAATTAGTCAATCAGAAAACAGCCGGCAACGACT
CTCGGGAGTTTCAGTAAACCTTACAAAATATATGACGTATAAGAGTGGTA
TGCGTTCTCAAGTAGTATGGTGGTTGCTGTCTTTGTATTGATAATCTGTT
CTTGGTCTCATGATGTGTTCCCTCTGTAGATGATGTTGCTTATTTCCCAA
CATGTTACTTTGAATCTCCAGAACAAGTGATAGCTTGAACCTACCAGTGC
CTCCTATGTGTCAAGCACCCCGACTGGACCCACAAGCCGTCCTGGTACTG
CACGCCAAGGCTGAGCAAGAATTTATCACTCGTTTAGGAGCCCTTCCCTG
TAAAGGTCCTAAATATGATTTCTCGGAGATTAAGGTATCCTTTGCCGATG
ACCGGACGGAAGTGTGATCAAAGGTTTTAACGTGTGAGGATTCTGCACTT
TCTAGTGCAGTCTAAAACCGTATGTCAAAACGGACAAGTCACGTACAACG
GCTATCCCACATAATTCCATCGGTTCATAAGTGATGAACCGAAGGAAGAC
CGATGAACCGAAGGAAGACCGATACAATAGTATAACCTGTGTTTTGCGGG
GATCGGAAATCGGGACTTAGTACTTGGTACCTAGTCGTGGGCTTAAGATC
CTCCCCTCACAGCGCTTCCGAGTGGTGTTAACAGTGGTTGCACACTCTGG
GGTGGAAAGAAAAGTCATGTCCCCACTGTCATGACTGACTGTGGCAGACT
GCCTGCCGATGTGCATATGAGTACCGTCATTCATAACAAAACGCCAGACA
AGCAGCAGCTATCGTTCGCTAGGGATCTCACGATAAATTGCTGGTGCCTG
CCAGCTCTTGTGTGCCGCAGATATGGTCCTGCATGCAGCAGACTTGTCTG
TATCTTTTGCTGCTTCGCAACTCCACGGAATCATGCCTTTACATTGTGCC
GCTAACTGCCACCACTCTAGGGCCCCAATGCATGTACTGCATTCTGTTAG
CTGCACCGCTTCTACATCAAGTACACGGCGCTTCGGCTGCTGTGCCAGCC
CTTGCCGTACGTGAATATTTTCAAAATGTCCGATGCCCTTTACTACCAAG
TGTCGACTTTTGATGTTCTACTCAGAGTATATATATACTAATAATTGAAA
CATGTCGAGATCCCGCTGTCCTGTTTGTCGTATACTGATCGATGCACGAG
TCTGATCTCAACCTGGTCAAAGCAATTATGCCTGTCGAAAATCGGCACCC
CCCCAATACCCCCCCCCCCGTCCCTTTTTTTCGGCACGGGATTGCCAAAA
CCCGCACGTCGAGATATGCTGAAATGCAGACTTGCTGGTCTGTGAGAGTT
TAAGAAAGTCTCATTACATATTTCCATGATCACATGTGAAAGCTAAATCA
GTTGTGGATAATATTCGCAGAACGTCACGACCTCTTGGATGTCTTTCAAA
ATCTAAGCCTGAATTGTATGTTGGCCATTTTCGTATCTGCGGCGCGATAT
TACTACAGTGCTGTTCAGTCAGTAGTCGTAAAGTACCACGGCTCGGCACA
CTGCTTTTAGTGTGGTCCACCCAGGGCCGAAGCTCGTTCGAGTAGGGCGG
CGCGTAACTGCGCCAAGTTGAGGGTCAACATTGGGGGGGTTTAGTGGGTG
AGAGCCCCACACTACCCTGAGCAAAGTCTTGCGAACGCTCGGGGTGCCGT
CCCCACATGATTTACGGATCTAGTCGGGCCTTCGGGTAACCGACACACGA
ACCCGGTTTCGGGGTAAGTGTTGGGCAAAGGTTTCCTCCCCTCCTTTCAA
GGAAAAAAAAAGAAAAAAGTGTGGTCCAATGGCTGTGGCGCGACCGATGT
GCTATGTGCGTCATTGCAGCCGCCAAGCTCGCGGTTGTGTTGGGAGAAGC
GCTGTGTAAGTGATTCTAGGGATCACTTATCATAACGAGGTTCAACCCAT
GCGCGATTGCAAGGAGTAGCCGAACATGTAAGAGGGTCCCTTTGCAACAT
GAAATCACGGAACCAGTTGAACTCTTATCAAGGAACCTGTGCTTGATGCT
GGCTAGCAGCCGATGCCAAACCTCGTAGATCGAAAGAATCACCTGTCACC
TGTTACGGTTATGCTGCTCCGAAACTTATCAAGAGGCAAAAATCTCCACC
ATTGAAGCCGGTTATAACTCAATATATCAAATCCTGAATGCATCTTACTG
TCGCCTGTTTGCACGGTGAACCTGGCGCAGGATGCTTCGATCGAGGGGAC
ATCAGGATTGAGGTGTTGGAGCTATAGTGTACCCTGGCTTTGCTCCAAGA
AATCCGTAATACCTTGCTGCCTGCGACATTAAACTGAGTTTGGTCTGATT
CCCCTCTGCTTGTCGTATCGGCGTTCGTTGTTGCAGTGACGTGCCAACGA
AGAAATTCATCCTCAGTCTCGACGCTCGCCTGTCATGCGTGGTTTCGGAC
CTCGATGATACACACATGTTCGTCAAAAAGGCCAGCGTGAAGGAAATACA
GTAAGTCGCAATGGATTACATGTTTTCTGTTGGCAGGACTACCAAAACGT
CTTGTAGGCCCGTGAATTTAGTTCGTCCCATCTGTGCCTTGCGTTGATAA
ATTTGCCCCCACTGTGCCTCGCACGAAGCGTACAGTTCTAGCATGATCTC
ATCGCTTGCACGGCACGCCTGGTTGTCTACTTGACATCTGTTTTATTGCT
GTATTTCTCTCGCGATGAGAGCACTGTTTGCTTGCCGTTAAGCACAAACC
ACCATCTAATTGTTCATAACGAAACCGCACACAGGCTCAAATTCCTCAGA
AATATACAGAGAAACTGTAGTGCGCATACGCCAAAAGGTTGTTCAGCTCC
AAACAGTGTATTCTCCAAAATGAGCTTCAACCTAAACAGTGCTTTCCGTC
ACCTAAAGTCATGACCAGTTATCTTGACTTCTAGGATCCAATGCCCCTCG
ATGTTGAAATTATTTTACGGCTTTTCACTAAGTCCATGCCCCCACAGCGT
TGCGTGAAAGCACTCTTTTTGCCACGATTTCGAGTGAAAATAACTGGCAT
TTTGAGCCCCAAAATAGCTCTTTTACACAACGCTGTGCGGGCTCGGGAGT
ATTGAAAAACCCTAAAATAGTCACGATGCGATCGAGTGGGGTTGGATCCC
CGAAATAAAGGTGAATGCTCATGACTTTAGGTTAGGGAAAACACTAGTGG
CTGTTTTGGGGTTGAACCTCATATAGAAAAAAAGCTGTTTCCATGGTTTT
ACCTACTCGTTAACCCTTCATATGTTCACGAGGCCCAGAATGAGACCATG
ATACCTCACTCGTCGAAAGCTGGTGCACTGACCCTTGAACACGCCCCGTG
TAATTTCGTGTCGGACTGTTGTTTCTTCGCATTAACAGGCACGAGCTGAA
TGAGCTGCACGAGCGAAACGTATATGTGCGCCCTCGATAGCGCAGGCCTG
CCCTGGGCAGGCGTCCCTCCTGGGCGTCCGTTGTGATTTTTCTATTTAGG
AGCGGTCGAGCGTTTGTCTGAGGTAACCCCGAACTTTCGCCACGATACCA
TGCCGTATAGGCGTTCATGTTTCTGCTGTTAGTGGCACGATCTTCACGAG
CTTCTGTTCCATATATAGAGAGTGAATTGCAAATTGCAGATGAGAGTGAT
TTCTAAAGTTTCAGAGGCGCAAGGTGAAGTCGACGGTGGGAAAAAAGAAC
GTCCTGGTAAATGGTTTCGCCCTAGCATGAAGCGTCGTAGGACGCTTTTC
GCTCCTTCACTTTCCTGTCATACCACCGACGGAGGATCTACCATGTATAT
ACTCCGGAGTACAGTAGCAAAATAGACTAGATGCTACGATGCCTATGCAC
TCCTCAAGTCGGTAGCCAATTTTCGCCGGGTGCAACAAGATTGCTTCGAC
TCTGACCCAAAAGCCACGCTTGGTAACTGTGTCATGCTCTATAAATTGTC
AGCTTCGCCATCCAGTGGTCATTTTGGCAGGTTGCCCATCTACCGTACTC
ACTTTTGAAGCTGTTCGAATGAAAAAAGCGCAGGCATAAGGGTGCGAGAG
GAATCTGGTCAGCATTCTAGTACAAGTCGGGCCGGGCATGTCAGGCAGCC
AAGAAAATCATATGCTTCCGAGGGGTAGTGGGAATGAGGGCACTACTGTG
TGTATGTCGCGTGAGGCGTGTACAGTAGGGACCTTTCTGTTAGATGTCAA
GCACATGAATATACTGGAGAAAGTAATGTAACCATGTACTGTTTCTGTTT
TCTGATGCGTTGCGGTTGAAATCTCTCGTCGTTCAAGATATCAACCTGCA
GTGAAGTATATTGCGGGCTCAAAGAATGCACACCGCAAAACAAAATGTGT
ACAACTCACAACTCGCCACAACCGCCTGAAACAAATTACCATA
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Coding sequence (CDS) from alignment at H-paniculata_contig7397:4939..9631-

>mRNA_H-paniculata_contig7397.15371.1 ID=mRNA_H-paniculata_contig7397.15371.1|Name=mRNA_H-paniculata_contig7397.15371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig7397:4939..9631- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAGCAATGTTCGAAGCAGCCACGGCGTGCTGATCACATGATGATG
AGCAATGTTCGAAGCAGCCACGGCGTGCTGATCACATGTGACGTGCCAAC
GAAGAAATTCATCCTCAGTCTCGACGCTCGCCTGTCATGCGTGGTTTCGG
ACCTCGATGATACACACATGTTCGTCAAAAAGGCCAGCGTGAAGGAAATA
CATGACGTGCCAACGAAGAAATTCATCCTCAGTCTCGACGCTCGCCTGTC
ATGCGTGGTTTCGGACCTCGATGATACACACATGTTCGTCAAAAAGGCCA
GCGTGAAGGAAATACAGCACGAGCTGAATGAGCTGCACGAGCGAAACGTA
TATGTGCGCCCTCGATAGGCACGAGCTGAATGAGCTGCACGAGCGAAACG
TATATGTGCGCCCTCGATAG
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