prot_H-paniculata_contig7282.15256.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7282.15256.1
Unique Nameprot_H-paniculata_contig7282.15256.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length86
Homology
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.560e-52
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0
Query:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPEDT 85
            MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYE+D DGTKR++QLDQILLNGNNVAMLVPGGSPEDT
Sbjct:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 85          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 148 bits (373), Expect = 6.440e-45
Identity = 69/83 (83.13%), Postives = 80/83 (96.39%), Query Frame = 0
Query:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPE 83
            MA RL+PLELIDKCIGS+LWIIMKGDKELVGTLRGFDDYVNMVL+DVTEYE+D +G +R+V+L+QILLNGNNVA+LVPGGSP+
Sbjct:    1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 139 bits (351), Expect = 1.700e-41
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPE 83
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDVTEYE+  +G KRKV +DQ+LLNGNNV +LVPGGSPE
Sbjct:    5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPE 83          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.540e-41
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPED 84
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDV EYE+  +G KRKV++DQ+LLNGNNV +LVPGG+PE+
Sbjct:    6 RLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEE 85          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A024G4D3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.500e-40
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPEDT 85
            R+LPLELIDKCIGSRLWI+M+GDKE VGTLRGFDDYVNMVLDDVTE+EL   G KR+ +LDQ+LLNGNNV ML+PGG PED+
Sbjct:    5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPEDS 85          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 135 bits (339), Expect = 1.020e-39
Identity = 64/80 (80.00%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSP 82
            +RLLPLELIDKCIGSRLWIIMKGDKE +GTLRGFDDYVNMVLDDVTEYE+  +G KR+++LDQ+LLNGNN+ +LVPGG P
Sbjct:    4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFP 82          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 134 bits (336), Expect = 2.930e-39
Identity = 64/83 (77.11%), Postives = 75/83 (90.36%), Query Frame = 0
Query:    2 AARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPED 84
            A RLLPLELIDKCIGS++WIIMKGDKE VGTLRGFDDYVNMVLDDVTE+E+  +G K++V+L+Q+LLNGNNV +LVPGG P D
Sbjct:    3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSD 84          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A7S2SPY3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.560e-39
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0
Query:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPE 83
            M+ + LPL +IDKCIGSRLW+IMKGDKELVGTLRGFDDYVNMVLDDVTEYE+  +G KR  +L+QILLNGNN+A+LVPGG PE
Sbjct:   24 MSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPE 105          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 133 bits (334), Expect = 1.140e-38
Identity = 63/79 (79.75%), Postives = 73/79 (92.41%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSP 82
            R+LPLELIDKCIGS+LWI+MKGDKE +GTLRGFDDYVNMVLDDVTEYE+  +G KR+V+LDQ+LLNGNNV +LVPGG P
Sbjct:   27 RILPLELIDKCIGSKLWIVMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQVLLNGNNVCLLVPGGFP 104          
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 132 bits (333), Expect = 1.390e-38
Identity = 62/80 (77.50%), Postives = 74/80 (92.50%), Query Frame = 0
Query:    3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSP 82
            +++LPLELIDKCIGS++W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYE+  DG KR  +LDQILLNGNNVA+LVPGG P
Sbjct:   21 SQVLPLELIDKCIGSKMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQILLNGNNVALLVPGGDP 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI1.560e-5295.29U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA6.440e-4583.13U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC1.700e-4185.00U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
A0A024UWN5_9STRA9.540e-4181.48U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]
A0A024G4D3_9STRA2.500e-4079.27U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
K3W4W8_GLOUD1.020e-3980.00U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A8K1CS49_PYTOL2.930e-3977.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2SPY3_9STRA6.560e-3977.11U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=R... [more]
W2LTZ1_PHYPR1.140e-3879.75U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]
A0A7S4M2I3_9EUKA1.390e-3877.50U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..78
e-value: 3.4E-23
score: 93.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..78
e-value: 8.5E-22
score: 76.6
NoneNo IPR availableGENE3D2.30.30.100coord: 6..83
e-value: 5.6E-28
score: 98.3
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 2..83
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7282contigH-paniculata_contig7282:1788..4538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7282.15256.1mRNA_H-paniculata_contig7282.15256.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7282 2..4705 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7282.15256.1 ID=prot_H-paniculata_contig7282.15256.1|Name=mRNA_H-paniculata_contig7282.15256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEY
ELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPEDT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf