mRNA_H-paniculata_contig7282.15256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7282.15256.1
Unique NamemRNA_H-paniculata_contig7282.15256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 5.240e-46
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 3 
Query:  168 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPEDT 422
            MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYE+D DGTKR++QLDQILLNGNNVAMLVPGGSPEDT
Sbjct:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPEDT 85
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.660e-39
Identity = 69/83 (83.13%), Postives = 80/83 (96.39%), Query Frame = 3 
Query:  168 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPE 416
            MA RL+PLELIDKCIGS+LWIIMKGDKELVGTLRGFDDYVNMVL+DVTEYE+D +G +R+V+L+QILLNGNNVA+LVPGGSP+
Sbjct:    1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 140 bits (353), Expect = 5.770e-36
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 3 
Query:  177 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPE 416
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDVTEYE+  +G KRKV +DQ+LLNGNNV +LVPGGSPE
Sbjct:    5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPE 83
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A7S2SPY3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.590e-35
Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 3 
Query:  144 GDERSKFKMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPEDT*GRLESS 443
            G+  +  KM+ + LPL +IDKCIGSRLW+IMKGDKELVGTLRGFDDYVNMVLDDVTEYE+  +G KR  +L+QILLNGNN+A+LVPGG PE    +LE+S
Sbjct:   16 GEREASGKMSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPEQ---QLEAS 111
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.710e-35
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 3 
Query:  177 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPED 419
            RLLPLELIDKCIGSR+WIIMKGDKE VGTLRGFDDYVNMVLDDV EYE+  +G KRKV++DQ+LLNGNNV +LVPGG+PE+
Sbjct:    6 RLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEE 85
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A024G4D3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 6.390e-35
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 3 
Query:  177 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPEDT 422
            R+LPLELIDKCIGSRLWI+M+GDKE VGTLRGFDDYVNMVLDDVTE+EL   G KR+ +LDQ+LLNGNNV ML+PGG PED+
Sbjct:    5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPEDS 85
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 135 bits (341), Expect = 2.250e-34
Identity = 64/80 (80.00%), Postives = 74/80 (92.50%), Query Frame = 3 
Query:  174 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSP 413
            +RLLPLELIDKCIGSRLWIIMKGDKE +GTLRGFDDYVNMVLDDVTEYE+  +G KR+++LDQ+LLNGNN+ +LVPGG P
Sbjct:    4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFP 82
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 134 bits (338), Expect = 5.790e-34
Identity = 64/83 (77.11%), Postives = 75/83 (90.36%), Query Frame = 3 
Query:  171 AARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPED 419
            A RLLPLELIDKCIGS++WIIMKGDKE VGTLRGFDDYVNMVLDDVTE+E+  +G K++V+L+Q+LLNGNNV +LVPGG P D
Sbjct:    3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSD 84
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 134 bits (336), Expect = 2.110e-33
Identity = 63/79 (79.75%), Postives = 73/79 (92.41%), Query Frame = 3 
Query:  177 RLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSP 413
            R+LPLELIDKCIGS+LWI+MKGDKE +GTLRGFDDYVNMVLDDVTEYE+  +G KR+V+LDQ+LLNGNNV +LVPGG P
Sbjct:   27 RILPLELIDKCIGSKLWIVMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQVLLNGNNVCLLVPGGFP 104
[Close]
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Match: A0A7S3BG05_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BG05_9EUKA)

HSP 1 Score: 133 bits (335), Expect = 2.260e-33
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 3 
Query:  129 SRSNSGDERSKFKMAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYELDGDGTKRKVQLDQILLNGNNVAMLVPGGSP 413
            SR +S          A++LPLE+IDKCIGSR+W+IM+GDKE+VGTLRGFDDYVNMVL+DVTEYE+  +G KR  +LDQILLNGNNVA+LVPGG P
Sbjct:    3 SRRDSTRVTGNAGFMAQVLPLEIIDKCIGSRMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITAEG-KRVTKLDQILLNGNNVALLVPGGDP 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7282.15256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI5.240e-4695.29U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA4.660e-3983.13U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC5.770e-3685.00U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
A0A7S2SPY3_9STRA1.590e-3569.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=R... [more]
A0A024UWN5_9STRA2.710e-3581.48U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]
A0A024G4D3_9STRA6.390e-3579.27U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
K3W4W8_GLOUD2.250e-3480.00U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A8K1CS49_PYTOL5.790e-3477.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2LTZ1_PHYPR2.110e-3379.75U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]
A0A7S3BG05_9EUKA2.260e-3368.42U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=H... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7282contigH-paniculata_contig7282:2..4705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2e-39
Seed eggNOG ortholog2880.D8LJI3
Preferred nameLSM5
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033993,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097305,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990726,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process
EggNOG OGsCOG1958@1,KOG1775@2759
Ec32 ortholog descriptionSm-like protein LSm5
Ec32 orthologEc-17_002110.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons3
Model size2211
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7282.15256.1prot_H-paniculata_contig7282.15256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7282 1788..4538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.209942-UTR-H-paniculata_contig7282:1..17871622930888.209942-UTR-H-paniculata_contig7282:1..1787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7282 2..1787 -
1691481497.3799934-UTR-H-paniculata_contig7282:1..17871691481497.3799934-UTR-H-paniculata_contig7282:1..1787Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7282 2..1787 -
1622930888.2635276-UTR-H-paniculata_contig7282:4538..47051622930888.2635276-UTR-H-paniculata_contig7282:4538..4705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7282 4539..4705 -
1691481497.4252565-UTR-H-paniculata_contig7282:4538..47051691481497.4252565-UTR-H-paniculata_contig7282:4538..4705Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7282 4539..4705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930888.2219365-CDS-H-paniculata_contig7282:1787..18501622930888.2219365-CDS-H-paniculata_contig7282:1787..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7282 1788..1850 -
1691481497.3932362-CDS-H-paniculata_contig7282:1787..18501691481497.3932362-CDS-H-paniculata_contig7282:1787..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7282 1788..1850 -
1622930888.234353-CDS-H-paniculata_contig7282:2423..25371622930888.234353-CDS-H-paniculata_contig7282:2423..2537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7282 2424..2537 -
1691481497.4061048-CDS-H-paniculata_contig7282:2423..25371691481497.4061048-CDS-H-paniculata_contig7282:2423..2537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7282 2424..2537 -
1622930888.2494705-CDS-H-paniculata_contig7282:4457..45381622930888.2494705-CDS-H-paniculata_contig7282:4457..4538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7282 4458..4538 -
1691481497.4158251-CDS-H-paniculata_contig7282:4457..45381691481497.4158251-CDS-H-paniculata_contig7282:4457..4538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7282 4458..4538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7282.15256.1

>prot_H-paniculata_contig7282.15256.1 ID=prot_H-paniculata_contig7282.15256.1|Name=mRNA_H-paniculata_contig7282.15256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEY
ELDGDGTKRKVQLDQILLNGNNVAMLVPGGSPEDT*
back to top

mRNA from alignment at H-paniculata_contig7282:2..4705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7282.15256.1 ID=mRNA_H-paniculata_contig7282.15256.1|Name=mRNA_H-paniculata_contig7282.15256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4704bp|location=Sequence derived from alignment at H-paniculata_contig7282:2..4705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCTTGCTAAGCTACACCCCTCCCGTCACCTATACGACAACACAGTTG
TTGGCAGGACGTAGTGAGGAACACCTGAGGAACGTAGATTACAGTCGGTG
ACCTGTGCGAGGAAGGCACCCTTATTGCTCAAGGAGTAATTCTGGCGACG
AAAGGTCGAAGTTCAAAATGGCGGCGAGATTGCTACCTCTGGAGCTCATC
GACAAATGCATTGGGTCGAGACTATGGATCATCATGAAGGGAGACAAGGT
GTGTAGAGGGCACGGGATACTGTCAGTCGTCCTGCTCTGGAATCCTGCCT
TACTGCCAAGTACTCAGAAGTTCTTGAAATCACGTGCGGGATGCTTGGCG
TATGGGCTCTGCTTCTTTCCGCTTAGATGTTCTTGGGGCCGTGAAATTGC
GGAGATGAGTAGGTCTGGAAATGGACCTGTCACTGCTGCGGTGTCTCGTG
TTGCATGCTTTTCAGGATTTGGTGGGCAGCTGCCAATCCCTGGTCCGGCG
TACCATGCAATTGGTAATTGTATACAGTATTTTTGTCGTCTCTCTATTTG
CATTTTTGGCTGCACGTTACGTGCATACTCATGTCTGCACTGTGCTGTCT
GTTATGTGCAAAATTAGAGGATGAAGTGTCATTCTGACAGGTGTCATCCG
TCAGCTTGTGCTTTTGGCTTACATCGTCCGCAACCCCAAAGGGTACGGAA
GATATCCACTGTTTCAACAAAACACTTGCATTTCGTATCAAATATAGGAT
CAAAGTGTCTCCTGCCTCAACTCTTTCGACACTGAGCCCTCGACACTAAC
GATTGGTCGATCTCTGGAACTAAAAAGGTGCGGCTGGGTAAAAGTAGCGA
AATGTGCGATAATGGCAAACTCGTAGCTTGGGAGCTGCTGCAGCCAATTT
CCCACCAACTCCAATCCTTTTGGTCCAAAACTTACCGGCGCAGCTCACTT
TGGGGGGAGGGATATCAGCAGAAAATTATACGATAACAAGTGGTCTGAAT
GTCCGAAGAGACGGACAAAGTGATTTGCGCCCCGCACCAGGAAAAAGACC
TCGTGACAGAGGGTGCCATACGCGAGGTTTTCGAGCGCGCGACAAACGTT
TCGCGTGCGGTAGACAAAAATGCTCAAATGTAAGGAAGCTTTTTCGAATA
TGACGAAATACAGAGAAAAGTACGTTCAAATGAGTTAACCCCTTCGCTCT
TCGGGGCCCAAGAGAAGCGCGAATCAACCAATTCTCTTCAGACCGGACGA
GAGATGAAACCCTTTCGTGTACAATCGCCTATGTTGTTATGTTCCAACAG
TTAATGCGTTTTGGTATGGAAATAGGAGGGACCCCAGAAAGTAGATTGTC
GAGGTGTGCGCCCTGTCAGGGTTAAGTGACTTCACTGCAGCTGTTCTGCT
ACGCTGTGAGATAATTACATCCCGTTGAAGTCGTGAAAACGTTGCTGCGT
TGCATAAGAATTGTTGTGCAAGACGAAAACCTTCTTTTTTGTAAATATCG
ATTCGGTCCAATATATCTATATCTAACAGTGAGCTGCTCTTCGCATTACG
TCTCGCTACAGAAGGAATCATTTTTTCAAAATTCGTATATTCCGCAAGGA
AACTGAAAGGTCACTGATTGTGACATGGAATTCGAATGGTGGCGAAACGT
TGGTGCACGTGGCCTGGGGTCCGGGACGAGGAGCTCACTGTTAGCTATAG
AGCTACACGACCAAATCGAAAATTGCGTTAGGAATTCGTTCTGCGTGAAC
ACTCTATTATACGGTAAAGTAGAGTTTACCTCAGTTTTTTGTCAAGTTTC
CATGGTTATGCACCACTTTCTCTTGCCGTAGTAAACCTGACCAGTCCCGC
CCCAATCTTTTTTCTATCTCTGCGCATTGGGCGCCGCGCAGTGGCGTAAG
CGTTTGGCCGATTTTAGGCGCTACCGGGCTCCAATCGACATCGCAAGGGT
GTCAAGGTTAAGGTTAACGTCAAGGATGGGGTTGGGTTGGGTTGGGTTAG
GCCAGCTTGACCTAACCGCACAAGCTTGAAATTCAAGAAAAAACAGCCAT
AGAAATTTGAGGATCAACTGGGTTAAGCTAACCTCTCTACGGTGAGGATA
CGGTTGGTCTCTAATTCGCGTGTTTGTCTCCATCTGGTCGCGCCCGCCAC
CGCCTCTTTCTTGTCCAGGAGCTGGTGGGAACATTGAGAGGTTTCGATGA
CTACGTGAACATGGTTTTGGATGATGTCACAGAGTACGAACTGGACGGCG
ACGGGACGAAGCGGAAAGTACAGTTGGATCAGGTGAAAATGCTATGGTGT
TCTTCAGTAAGAAGTCAAGTACGTGCCCACCACGTGGTTCATGTGACTAG
CGAGTGTTTGGTTGGTGATGGGAACAATTATCCAATTCTGTAGGTATCTT
GGAGGGATTTTTGCTTACACATCATTAGCGAGCGCGGGGGCCCGTTGTGC
GGGAGTTGGTATCGAAATACTCGATAGTAAGAAAGACTATACGGGCATGA
TCGTAGCTTTACTACCAGTATAATTTTTTAGGGGAATACGTGGGACAGTT
GAAATCCATGTCGATATGAAAAACTCTCCTTTTTTTGTCCACTGTTTGTC
TGGTTCAAATAAAGATGTCTCGGAGATTAGGGAAAGTGCCCAAAAATCCA
CGCTGAAGCTCGTTTTTCACCAACAAAATCGCTCGTATGCAACCAAGTCC
CTTGTTGGTTTGAATTCAATTTTGAGTTGTGATAATAGGGACATGGTAAC
GCGCCCCCGGCCCTCCTCGTACGCTAACGTCACGGAGGTGGCCCAACTGC
TCGTCCCTCTCTCTTCATCTGTGTGTTTTCCTGCTCTGGTAACCACGGCG
GATAGATTTTGCTGAACGGCAATAACGTGGCCATGTTAGTTCCGGGAGGA
AGCCCGGAAGACACATAGGGCCGACTCGAGTCCTCTTCAGCGGAATGGAT
ACGAGCAGGATTTGAACCACCGTGGAAGGAATTTTTGTTGGCGGGACGTC
GACGTTGGTTGGTGCCGCGAGTGCGCGCGCGAGGAGATGGGGGGAAAGGG
AGTTCGTTTCATGGTTGAAGGGAGGGGGGGAGAGCTTGGCATATGGAGTA
GCCACCATAAAATTAGCACTTGATCCGGTGAAAGCTAAGCTTTCCTCCCC
CCCCCCTCTCGTTTCGGTTGTAGTCGCGCGAGCTAAGTCGGTCGTTTGCG
TAGCCGCATTTTTTTTCCCGTCGTCGGGGTATCGTCATCGTTGTTGTCGT
TGTTGTTGCCTAGAGAGGAGCCGTGCTGGGGAGAAAAGGACCCGCACGTC
GTGGTTGATTATTATACAGTGAGTTGGTCGCCGAAGAGGCTACGTATGTG
GAAACGAATGCACATGGTTTTGATGTCTAACTTTACAGTGCGTCGGAATG
CCCGTCGGGTGTACGAGGGTGATGCGTGGCTTTCATAGTATACTGATTTT
GTCCCGCAGCTGTCGCGCGAGCGTGAGCGCTCTGTTTTTCACGTTCTTTT
TCTGTCTCTCCCTCTGTCTCTCCCTTGGGTTTACGACTCGCCGAGAATTG
GAGCTGCAAGTATGTCCTCTCTGTCGTTCAACAGTTTCCAGTTGAAGCAA
GATGTTCTTCGTATTAGCTGTAGCAGTCAGGGTGATGGCTACGCCGTAAG
CACACTCCGGGCAAAGTATGTAAAAGTTTTTCCGAGGGGCGCGCTGTAAG
CGCGGAATGCGCGGAGGGATGACGGATTGCGGTGACCCCAAGGACTTGGT
CCGCTGGAAGCCATGCCACATCATATGCGCTTGTCGTTCCCGTTGACCTG
TGAAGTTGTATTCGTAATACGGGGGGGTCTTGTTTATTGGGTTTTTGGGG
ATAACTTGACGTAGACGTAGTCGTTTTTCAATCTACGGTAAGCTTGAATG
AAAGCAAACGGGCAAAAGGTGGATGTGTGGAAATGATTTTTTTATTTGTT
TGTGTGTGTCTGGTGATTCTCGGATTTCCCCAGCAAACTGCCGCAAGTAT
CCGCAAAGTTCGTCAAACTCTTGCGCTGCGTTGTAACTACGTAGAGTGGG
TGGTATATCATCGCCTATGCGTCGTGCGTCATAGCCAAGGTGCAGTGTGT
TGTCCAACAGAAAAATGTATGGTGGGAAGTTGGGTGCGCTCTTCGGAACT
ACAGTAGTATGCCTTACGTTGGGCTAATATTTTTTTCGATCGTGAAGGGC
AGAGTAGCGAGGTCGTTGTCCTATGAACAAAGAACCGACTCGCGGAACGC
TGTTTTTTGCGAGTCTGTCATGCCGAACAGCGTCTTGCCCGATCATTAGA
AGTAAGTTGTATAGTAGCGGGCAGCTTGATTCAGCTTATTTTTCATTTTT
TTCTCCATCAATCTTGATGAACAGTGCCTCTATATGAGAGAGTAGCGAGC
CATTGTATGAGGCACACTGTTCGGGGGTAATGTTGACTAAATGGACACAA
AGATAACATACGGACTGGAGTATGACTGGAGGGACATGGCCGTGGCTTTG
TTATTAGTTTGAAAATAACAATTAGCTGTGTGATGGCCACCTTGGAAACA
GTCCCATCCGAATGGTTACCGCCTCTACGTGGCGGACGGGATCCACTCAA
CCCGGGGTAATTCCCTAACCCTAGACCTAACACTAACCCAACTCACCCCG
GGGTAAACTCCAGGTTGATGGGGGTGAGGCCGAGAGTAACCACCGCATCA
TCCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7282:2..4705-

>mRNA_H-paniculata_contig7282.15256.1 ID=mRNA_H-paniculata_contig7282.15256.1|Name=mRNA_H-paniculata_contig7282.15256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig7282:2..4705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCGAGATTGCTACCTCTGGAGCTCATCGACAAATGCATTGGGTC
GAGACTATGGATCATCATGAAGGGAGACAAGATGGCGGCGAGATTGCTAC
CTCTGGAGCTCATCGACAAATGCATTGGGTCGAGACTATGGATCATCATG
AAGGGAGACAAGGAGCTGGTGGGAACATTGAGAGGTTTCGATGACTACGT
GAACATGGTTTTGGATGATGTCACAGAGTACGAACTGGACGGCGACGGGA
CGAAGCGGAAAGTACAGTTGGATCAGGAGCTGGTGGGAACATTGAGAGGT
TTCGATGACTACGTGAACATGGTTTTGGATGATGTCACAGAGTACGAACT
GGACGGCGACGGGACGAAGCGGAAAGTACAGTTGGATCAGATTTTGCTGA
ACGGCAATAACGTGGCCATGTTAGTTCCGGGAGGAAGCCCGGAAGACACA
TAGATTTTGCTGAACGGCAATAACGTGGCCATGTTAGTTCCGGGAGGAAG
CCCGGAAGACACATAG
back to top