prot_H-paniculata_contig72363.15211.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig72363.15211.1
Unique Nameprot_H-paniculata_contig72363.15211.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length200
Homology
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 9.870e-38
Identity = 79/206 (38.35%), Postives = 130/206 (63.11%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG   +L+   + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV  +L+RF M  ANP  T G   + +T   +  Q+L     K Y+ M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K ++RYL+G+P +PI Y R + +L  F+D+S+       RS+TG +FF A GL+ + ++ Q
Sbjct:   53 LTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 257          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 7.540e-35
Identity = 79/206 (38.35%), Postives = 130/206 (63.11%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG   +L+   + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV  +L+RF M  ANP  T G   + +T   +  Q+L     K Y+ M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K ++RYL+G+P +PI Y R + +L  F+D+S+       RS+TG +FF A GL+ + ++ Q
Sbjct:  380 LTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 584          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.000e-34
Identity = 79/206 (38.35%), Postives = 130/206 (63.11%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG   +L+   + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV  +L+RF M  ANP  T G   + +T   +  Q+L     K Y+ M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K ++RYL+G+P +PI Y R + +L  F+D+S+       RS+TG +FF A GL+ + ++ Q
Sbjct:  536 LTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 740          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.880e-34
Identity = 78/206 (37.86%), Postives = 129/206 (62.62%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG   +L+   + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV   L+RF M  ANP  T G   + +T   +  Q+L     K Y+ M GS++ L QCT+FD+ ++ +Q ++  S P Q ++ A K ++RYL+G+P +PI Y R + +L  F+D+S+       RS+TG +FF A GL+ + ++ Q
Sbjct:  172 LTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 376          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 8.330e-33
Identity = 75/206 (36.41%), Postives = 125/206 (60.68%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG    ++   + +LM+ F +TD+G+V  ++G+EV R+ + GTL +SQ  Y   +L R+ M  ANP  T G   + +T   +  QLL     + ++ + GSL+ L QCTR+D+ ++V Q  R  + P Q H+ A K ++RYL+G PD+PI Y + + +L  F+D+S+       RS+TG +FF   GL+ + ++ Q
Sbjct: 1192 LAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 1396          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.360e-32
Identity = 80/206 (38.83%), Postives = 129/206 (62.62%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG  D+ L+D + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV  +L+RF M  ANP  T G   + +T   +  Q+L     K Y+ M  S++ L QCTRFD+ ++ +Q ++  S P Q +L A K ++RYL+G+P +PI Y R +  L   +D+S+       RS+TG +FF A GL+ + ++ Q
Sbjct:  273 LTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQ 476          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.710e-32
Identity = 75/206 (36.41%), Postives = 125/206 (60.68%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG    ++   + +LM+ F +TD+G+V  ++G+EV R+ + GTL +SQ  Y   +L R+ M  ANP  T G   + +T   +  QLL     + ++ + GSL+ L QCTR+D+ ++V Q  R  + P Q H+ A K ++RYL+G PD+PI Y + + +L  F+D+S+       RS+TG +FF   GL+ + ++ Q
Sbjct:  413 LAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 617          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 3.750e-32
Identity = 79/212 (37.26%), Postives = 129/212 (60.85%), Query Frame = 0
Query:    3 SLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLG-------FSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            S++VD IL+TG   +L+   + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV  +L+RF M  ANP  T G   + +T   +  Q+L     K Y+ M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K ++RYL+G+P +PI Y R + +L         F+D+S+       RS+TG +FF A GL+ + ++ Q
Sbjct:  760 SVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 970          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 7.720e-32
Identity = 76/206 (36.89%), Postives = 123/206 (59.71%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 200
            L+++VD IL+TG   +L+   + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV  +L+RF M  ANP                  Q+L     K Y+ M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K  +RYL+G+P +PI Y R + +L  F+D+S+       RS+TG +FF A GL+ + ++ Q
Sbjct:  155 LTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP-----------------DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 343          
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.710e-31
Identity = 70/184 (38.04%), Postives = 115/184 (62.50%), Query Frame = 0
Query:    2 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCTRSSTG 183
            L+++VD IL+TG   +L+   + +L ++F +TD+G+V  ILG++V R+ + GTL +SQ  YV  +L+RF M  ANP  T G   + +T   +  Q+L     K Y+ M GS++ L QCTRFD+ ++ +Q ++  S P Q ++ A K ++RYL+G+P +PI Y R + +L  F+D+S+      G
Sbjct:  128 LTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNG 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAK0_9PHAE9.870e-3838.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE7.540e-3538.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.000e-3438.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE2.880e-3437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE8.330e-3336.41Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5JDU8_9PHAE1.360e-3238.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.710e-3236.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE3.750e-3237.26Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KDK0_9PHAE7.720e-3236.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGS8_9PHAE1.710e-3138.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..79
e-value: 3.9E-11
score: 43.1
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 7..178
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 7..178

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72363contigH-paniculata_contig72363:14..613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72363.15211.1mRNA_H-paniculata_contig72363.15211.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig72363 14..616 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig72363.15211.1 ID=prot_H-paniculata_contig72363.15211.1|Name=mRNA_H-paniculata_contig72363.15211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
MLSLFVDILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQ
TGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAA
ATKEYKVMVGSLILTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRY
LQGHPDVPITYSRCEPKLLGFSDASYCTRSSTGTMFFFANGLVHFSSRLQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like