mRNA_H-paniculata_contig72363.15211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.020e-37 Identity = 79/208 (37.98%), Postives = 132/208 (63.46%), Query Frame = 1
Query: 1 IMLSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
++L+++VD IL+TG +L+ + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV +L+RF M ANP T G + +T + Q+L K Y+ M GS++ L QCTRFD+ ++ +Q ++ S P Q ++ A K ++RYL+G+P +PI Y R + +L F+D+S+ RS+TG +FF A GL+ + ++ Q
Sbjct: 51 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 257
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 139 bits (351), Expect = 7.800e-35 Identity = 79/208 (37.98%), Postives = 132/208 (63.46%), Query Frame = 1
Query: 1 IMLSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
++L+++VD IL+TG +L+ + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV +L+RF M ANP T G + +T + Q+L K Y+ M GS++ L QCTRFD+ ++ +Q ++ S P Q ++ A K ++RYL+G+P +PI Y R + +L F+D+S+ RS+TG +FF A GL+ + ++ Q
Sbjct: 378 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 584
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 139 bits (351), Expect = 1.040e-34 Identity = 79/208 (37.98%), Postives = 132/208 (63.46%), Query Frame = 1
Query: 1 IMLSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
++L+++VD IL+TG +L+ + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV +L+RF M ANP T G + +T + Q+L K Y+ M GS++ L QCTRFD+ ++ +Q ++ S P Q ++ A K ++RYL+G+P +PI Y R + +L F+D+S+ RS+TG +FF A GL+ + ++ Q
Sbjct: 534 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 740
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 136 bits (342), Expect = 2.980e-34 Identity = 78/208 (37.50%), Postives = 131/208 (62.98%), Query Frame = 1
Query: 1 IMLSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
++L+++VD IL+TG +L+ + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV L+RF M ANP T G + +T + Q+L K Y+ M GS++ L QCT+FD+ ++ +Q ++ S P Q ++ A K ++RYL+G+P +PI Y R + +L F+D+S+ RS+TG +FF A GL+ + ++ Q
Sbjct: 170 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 376
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.410e-32 Identity = 80/208 (38.46%), Postives = 131/208 (62.98%), Query Frame = 1
Query: 1 IMLSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
++L+++VD IL+TG D+ L+D + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV +L+RF M ANP T G + +T + Q+L K Y+ M S++ L QCTRFD+ ++ +Q ++ S P Q +L A K ++RYL+G+P +PI Y R + L +D+S+ RS+TG +FF A GL+ + ++ Q
Sbjct: 271 VILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQ 476
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.600e-32 Identity = 75/206 (36.41%), Postives = 125/206 (60.68%), Query Frame = 1
Query: 7 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
L+++VD IL+TG ++ + +LM+ F +TD+G+V ++G+EV R+ + GTL +SQ Y +L R+ M ANP T G + +T + QLL + ++ + GSL+ L QCTR+D+ ++V Q R + P Q H+ A K ++RYL+G PD+PI Y + + +L F+D+S+ RS+TG +FF GL+ + ++ Q
Sbjct: 1192 LAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 1396
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 132 bits (332), Expect = 3.290e-32 Identity = 75/206 (36.41%), Postives = 125/206 (60.68%), Query Frame = 1
Query: 7 LSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
L+++VD IL+TG ++ + +LM+ F +TD+G+V ++G+EV R+ + GTL +SQ Y +L R+ M ANP T G + +T + QLL + ++ + GSL+ L QCTR+D+ ++V Q R + P Q H+ A K ++RYL+G PD+PI Y + + +L F+D+S+ RS+TG +FF GL+ + ++ Q
Sbjct: 413 LAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQ 617
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 132 bits (331), Expect = 5.280e-32 Identity = 77/207 (37.20%), Postives = 125/207 (60.39%), Query Frame = 1
Query: 22 DILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLG-------FSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
DIL+TG +L+ + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV +L+RF M ANP T G + +T + Q+L K Y+ M GS++ L QCTRFD+ ++ +Q ++ S P Q ++ A K ++RYL+G+P +PI Y R + +L F+D+S+ RS+TG +FF A GL+ + ++ Q
Sbjct: 765 DILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 970
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE) HSP 1 Score: 130 bits (326), Expect = 7.980e-32 Identity = 76/208 (36.54%), Postives = 125/208 (60.10%), Query Frame = 1
Query: 1 IMLSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCT-----RSSTGTMFFFANGLVHFSSRLQ 603
++L+++VD IL+TG +L+ + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV +L+RF M ANP Q+L K Y+ M GS++ L QCTRFD+ ++ +Q ++ S P Q ++ A K +RYL+G+P +PI Y R + +L F+D+S+ RS+TG +FF A GL+ + ++ Q
Sbjct: 153 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP-----------------DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQ 343
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE) HSP 1 Score: 126 bits (316), Expect = 1.770e-31 Identity = 70/186 (37.63%), Postives = 117/186 (62.90%), Query Frame = 1
Query: 1 IMLSLFVD-ILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQTGTLQLSQHKYVLPVLDRFNMSSANPTKTHGVNTDSTTTTSEGSQLLDAAATKEYKVMVGSLI-LTQCTRFDICFSVIQAARYMSAPTQQHLVAVKRIIRYLQGHPDVPITYSRCEPKLLGFSDASYCTRSSTG 552
++L+++VD IL+TG +L+ + +L ++F +TD+G+V ILG++V R+ + GTL +SQ YV +L+RF M ANP T G + +T + Q+L K Y+ M GS++ L QCTRFD+ ++ +Q ++ S P Q ++ A K ++RYL+G+P +PI Y R + +L F+D+S+ G
Sbjct: 126 VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNG 310 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72363.15211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig72363.15211.1 >prot_H-paniculata_contig72363.15211.1 ID=prot_H-paniculata_contig72363.15211.1|Name=mRNA_H-paniculata_contig72363.15211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp MLSLFVDILVTGPTDRLLMDVRNKLMNKFTITDLGKVSLILGMEVLRNKQback to top mRNA from alignment at H-paniculata_contig72363:14..616- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig72363.15211.1 ID=mRNA_H-paniculata_contig72363.15211.1|Name=mRNA_H-paniculata_contig72363.15211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at H-paniculata_contig72363:14..616- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig72363:14..616- >mRNA_H-paniculata_contig72363.15211.1 ID=mRNA_H-paniculata_contig72363.15211.1|Name=mRNA_H-paniculata_contig72363.15211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig72363:14..616- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |