prot_H-paniculata_contig72286.15202.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig72286.15202.1
Unique Name	prot_H-paniculata_contig72286.15202.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	95

Homology

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.510e-23
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 0

Query:    2 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            QLD  T+FL A +EE+V+VKM  G+E  + +G  +VM+L  +LYGL QSP NWW TI  +L ++GF+ LK   CVY+Y  +N +V++ LY DD
Sbjct:  370 QLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDD 462

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.480e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 0

Query:    2 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            Q+D +TAFL A ++EEV+V+   G+E  D+ G  MVM+L K+LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct:  237 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 329

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.720e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 0

Query:    2 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            Q+D +TAFL A ++EEV+V+   G+E  D+ G  MVM+L K+LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct: 1258 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 1350

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.720e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 0

Query:    2 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            Q+D +TAFL A ++EEV+V+   G+E  D+ G  MVM+L K+LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct: 1423 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 1515

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.530e-21
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 0

Query:    2 QLDHNTAFLNAAVEEEVYVKMGIGYEEFD-ESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            Q+D +TAFL A ++EEV+V+   G+E  D E G  MVM+L K+LYGL QSP NW+ TI   + +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct:   28 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 121

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 9.300e-21
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 0

Query:    2 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            Q+D +TAFL   + EEV+V+   G+E  D+ G  MVM+L ++LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct: 1039 QMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 1131

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.770e-20
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 0

Query:    3 LDHNTAFLNAAVEEEVYVKMGIGYEEFDE-SGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            +D  TAFL + VEEEVYV+   GYE  DE +G+P+VM+L K+LYGL+QSP N+     K + +IGF  L  +PCVYVY       +L +Y DD
Sbjct:  102 MDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDD 194

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.900e-19
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 0

Query:    3 LDHNTAFLNAAVEEEVYVKMGIGYEEFDE-SGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            +D  TAFL + VEEEVYV+   GYE  DE +G+P+VM+L K+LYGL+QSP N+     K + +IGF  L  +PCVYVY       +L +Y DD
Sbjct:  998 MDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDD 1090

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.790e-19
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 0

Query:    7 TAFLNAAVEEEVYVKMGIGYEEFDE-SGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            TAFL + VE EVYV+   GYE  DE +G+P+VM+L K+LYGL+QSP N+   + K + DIGF  L  +PCV VY       +L +Y D+
Sbjct:    5 TAFLQSNVEAEVYVRQAKGYEIMDEVTGLPLVMKLKKSLYGLKQSPRNFGNAVAKGIKDIGFTALLSDPCVCVYGAGPTYAILCVYVDN 93

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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.390e-18
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 0

Query:    2 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 94
            Q+D +TAFL A + E V+V+   G+E  D+ G  +VM+L K+LYGL QSP NW+ TI   L +IGF  LK + CVY+Y   +  V L LY DD
Sbjct:  566 QMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDD 658

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KUT9_9PHAE	4.510e-23	49.46	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JME8_9PHAE	5.480e-22	51.61	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KJH6_9PHAE	5.720e-22	51.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	5.720e-22	51.61	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5L5U2_9PHAE	8.530e-21	51.06	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JYB5_9PHAE	9.300e-21	49.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVC8_9PHAE	2.770e-20	49.46	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KY84_9PHAE	3.900e-19	49.46	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L4S3_9PHAE	6.790e-19	48.31	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KL37_9PHAE	3.390e-18	48.39	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..95 e-value: 6.8E-20 score: 71.7
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 2..94
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 2..94

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig72286	contig	H-paniculata_contig72286:3..287 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig72286.15202.1	mRNA_H-paniculata_contig72286.15202.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig72286 3..287 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig72286.15202.1 ID=prot_H-paniculata_contig72286.15202.1|Name=mRNA_H-paniculata_contig72286.15202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
WQLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQS
PWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADDV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like