mRNA_H-paniculata_contig72286.15202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig72286.15202.1
Unique NamemRNA_H-paniculata_contig72286.15202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.510e-23
Identity = 46/93 (49.46%), Postives = 65/93 (69.89%), Query Frame = 1 
Query:    4 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            QLD  T+FL A +EE+V+VKM  G+E  + +G  +VM+L  +LYGL QSP NWW TI  +L ++GF+ LK   CVY+Y  +N +V++ LY DD
Sbjct:  370 QLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDD 462
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BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.480e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    4 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            Q+D +TAFL A ++EEV+V+   G+E  D+ G  MVM+L K+LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct:  237 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 329
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.720e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    4 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            Q+D +TAFL A ++EEV+V+   G+E  D+ G  MVM+L K+LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct: 1258 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 1350
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.720e-22
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    4 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            Q+D +TAFL A ++EEV+V+   G+E  D+ G  MVM+L K+LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct: 1423 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 1515
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.530e-21
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    4 QLDHNTAFLNAAVEEEVYVKMGIGYEEFD-ESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            Q+D +TAFL A ++EEV+V+   G+E  D E G  MVM+L K+LYGL QSP NW+ TI   + +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct:   28 QMDVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 121
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 9.300e-21
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    4 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            Q+D +TAFL   + EEV+V+   G+E  D+ G  MVM+L ++LYGL QSP NW+ TI   L +IGF  LK +PCVY+Y  + A + L LY DD
Sbjct: 1039 QMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDD 1131
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.770e-20
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    7 LDHNTAFLNAAVEEEVYVKMGIGYEEFDE-SGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            +D  TAFL + VEEEVYV+   GYE  DE +G+P+VM+L K+LYGL+QSP N+     K + +IGF  L  +PCVYVY       +L +Y DD
Sbjct:  102 MDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDD 194
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.900e-19
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:    7 LDHNTAFLNAAVEEEVYVKMGIGYEEFDE-SGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            +D  TAFL + VEEEVYV+   GYE  DE +G+P+VM+L K+LYGL+QSP N+     K + +IGF  L  +PCVYVY       +L +Y DD
Sbjct:  998 MDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDD 1090
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5L4S3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.790e-19
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:   19 TAFLNAAVEEEVYVKMGIGYEEFDE-SGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            TAFL + VE EVYV+   GYE  DE +G+P+VM+L K+LYGL+QSP N+   + K + DIGF  L  +PCV VY       +L +Y D+
Sbjct:    5 TAFLQSNVEAEVYVRQAKGYEIMDEVTGLPLVMKLKKSLYGLKQSPRNFGNAVAKGIKDIGFTALLSDPCVCVYGAGPTYAILCVYVDN 93
[Close]
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.390e-18
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    4 QLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQSPWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADD 282
            Q+D +TAFL A + E V+V+   G+E  D+ G  +VM+L K+LYGL QSP NW+ TI   L +IGF  LK + CVY+Y   +  V L LY DD
Sbjct:  566 QMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDD 658
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72286.15202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUT9_9PHAE4.510e-2349.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE5.480e-2251.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE5.720e-2251.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE5.720e-2251.61Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5L5U2_9PHAE8.530e-2151.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JYB5_9PHAE9.300e-2149.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVC8_9PHAE2.770e-2049.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE3.900e-1949.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L4S3_9PHAE6.790e-1948.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE3.390e-1848.39Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72286contigH-paniculata_contig72286:3..287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.1
Seed ortholog evalue6.1e-13
Seed eggNOG ortholog7425.NV17651-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930880.1978443-CDS-H-paniculata_contig72286:2..2871622930880.1978443-CDS-H-paniculata_contig72286:2..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72286 3..287 -
1691481494.0636473-CDS-H-paniculata_contig72286:2..2871691481494.0636473-CDS-H-paniculata_contig72286:2..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72286 3..287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72286.15202.1prot_H-paniculata_contig72286.15202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig72286 3..287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig72286.15202.1

>prot_H-paniculata_contig72286.15202.1 ID=prot_H-paniculata_contig72286.15202.1|Name=mRNA_H-paniculata_contig72286.15202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
WQLDHNTAFLNAAVEEEVYVKMGIGYEEFDESGVPMVMRLVKNLYGLRQS
PWNWWGTIGKRLADIGFKRLKLNPCVYVYSESNAIVVLNLYADDV
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mRNA from alignment at H-paniculata_contig72286:3..287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig72286.15202.1 ID=mRNA_H-paniculata_contig72286.15202.1|Name=mRNA_H-paniculata_contig72286.15202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig72286:3..287- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAACTCGACCACAACACCGCGTTTCTGAACGCTGCCGTCGAGGAGGA
GGTGTATGTCAAGATGGGAATAGGGTACGAGGAGTTCGACGAAAGCGGAG
TTCCAATGGTAATGAGACTTGTGAAGAACCTCTATGGTCTTCGTCAGAGC
CCATGGAACTGGTGGGGGACTATCGGTAAACGTCTTGCGGATATCGGTTT
CAAACGCCTCAAGCTAAACCCGTGCGTCTACGTCTACTCAGAAAGCAATG
CCATCGTCGTTTTGAACCTGTACGCCGACGACGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig72286:3..287-

>mRNA_H-paniculata_contig72286.15202.1 ID=mRNA_H-paniculata_contig72286.15202.1|Name=mRNA_H-paniculata_contig72286.15202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig72286:3..287- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAACTCGACCACAACACCGCGTTTCTGAACGCTGCCGTCGAGGAGGA
GGTGTATGTCAAGATGGGAATAGGGTACGAGGAGTTCGACGAAAGCGGAG
TTCCAATGGTAATGAGACTTGTGAAGAACCTCTATGGTCTTCGTCAGAGC
CCATGGAACTGGTGGGGGACTATCGGTAAACGTCTTGCGGATATCGGTTT
CAAACGCCTCAAGCTAAACCCGTGCGTCTACGTCTACTCAGAAAGCAATG
CCATCGTCGTTTTGAACCTGTACGCCGACGACGTTTGGCAACTCGACCAC
AACACCGCGTTTCTGAACGCTGCCGTCGAGGAGGAGGTGTATGTCAAGAT
GGGAATAGGGTACGAGGAGTTCGACGAAAGCGGAGTTCCAATGGTAATGA
GACTTGTGAAGAACCTCTATGGTCTTCGTCAGAGCCCATGGAACTGGTGG
GGGACTATCGGTAAACGTCTTGCGGATATCGGTTTCAAACGCCTCAAGCT
AAACCCGTGCGTCTACGTCTACTCAGAAAGCAATGCCATCGTCGTTTTGA
ACCTGTACGCCGACGACGTT
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