prot_H-paniculata_contig72121.15190.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig72121.15190.1
Unique Nameprot_H-paniculata_contig72121.15190.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length43
Homology
[Close]
BLAST of mRNA_H-paniculata_contig72121.15190.1 vs. uniprot
Match: D8LTM3_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.790e-15
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:    1 DNCGHHFCGGCLERWLGNTSQGECPVCREPCEKLVPVRMVDDV 43
            DNCGH FCG C+ERW+ N  QGECPVCR P +KLVPVR +D++
Sbjct:  199 DNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEM 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72121.15190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTM3_ECTSI4.790e-1567.44RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 2..28
e-value: 8.2E-9
score: 35.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 3..28
score: 9.952
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..43
e-value: 5.3E-11
score: 43.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 3..12
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72121contigH-paniculata_contig72121:313..441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72121.15190.1mRNA_H-paniculata_contig72121.15190.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig72121 313..441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig72121.15190.1 ID=prot_H-paniculata_contig72121.15190.1|Name=mRNA_H-paniculata_contig72121.15190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
DNCGHHFCGGCLERWLGNTSQGECPVCREPCEKLVPVRMVDDV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS