mRNA_H-paniculata_contig72121.15190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig72121.15190.1
Unique NamemRNA_H-paniculata_contig72121.15190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig72121.15190.1 vs. uniprot
Match: D8LTM3_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM3_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.790e-15
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 DNCGHHFCGGCLERWLGNTSQGECPVCREPCEKLVPVRMVDDV 129
            DNCGH FCG C+ERW+ N  QGECPVCR P +KLVPVR +D++
Sbjct:  199 DNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEM 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72121.15190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTM3_ECTSI4.790e-1567.44RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72121contigH-paniculata_contig72121:313..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-28_003550.1
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930878.5359752-CDS-H-paniculata_contig72121:312..4411622930878.5359752-CDS-H-paniculata_contig72121:312..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72121 313..441 +
1691481493.3503747-CDS-H-paniculata_contig72121:312..4411691481493.3503747-CDS-H-paniculata_contig72121:312..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72121 313..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72121.15190.1prot_H-paniculata_contig72121.15190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig72121 313..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig72121.15190.1

>prot_H-paniculata_contig72121.15190.1 ID=prot_H-paniculata_contig72121.15190.1|Name=mRNA_H-paniculata_contig72121.15190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
DNCGHHFCGGCLERWLGNTSQGECPVCREPCEKLVPVRMVDDV
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mRNA from alignment at H-paniculata_contig72121:313..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig72121.15190.1 ID=mRNA_H-paniculata_contig72121.15190.1|Name=mRNA_H-paniculata_contig72121.15190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig72121:313..441+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAACTGCGGGCATCACTTCTGCGGCGGGTGCTTGGAGCGTTGGCTGGG
CAACACGTCGCAGGGCGAGTGCCCTGTGTGCCGTGAACCCTGTGAAAAGC
TCGTGCCGGTTCGCATGGTTGACGATGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig72121:313..441+

>mRNA_H-paniculata_contig72121.15190.1 ID=mRNA_H-paniculata_contig72121.15190.1|Name=mRNA_H-paniculata_contig72121.15190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig72121:313..441+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAACTGCGGGCATCACTTCTGCGGCGGGTGCTTGGAGCGTTGGCTGGG
CAACACGTCGCAGGGCGAGTGCCCTGTGTGCCGTGAACCCTGTGAAAAGC
TCGTGCCGGTTCGCATGGTTGACGATGTAGATAACTGCGGGCATCACTTC
TGCGGCGGGTGCTTGGAGCGTTGGCTGGGCAACACGTCGCAGGGCGAGTG
CCCTGTGTGCCGTGAACCCTGTGAAAAGCTCGTGCCGGTTCGCATGGTTG
ACGATGTA
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