prot_H-paniculata_contig72.15178.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig72.15178.1
Unique Nameprot_H-paniculata_contig72.15178.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length344
Homology
BLAST of mRNA_H-paniculata_contig72.15178.1 vs. uniprot
Match: D7FJQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ2_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 4.220e-50
Identity = 141/356 (39.61%), Postives = 177/356 (49.72%), Query Frame = 0
Query:    1 AVRYNLLLAKCAEIGAWETAISTYRSMKARCDTHNSGSKRGNTTLDQPLPGPIVYQHLLRAAKNAMPPRPRAALSVLWEMRSRGATPSASHYNIVVSACARAAAVAGTQSIASVVH---TTGELCSCRS----------GIKIKGNCANDGDQGDTGTPGKTEDARDLGASSDGGPDLGKTECNREDSGRKCVGEAKASRTSTSSRKSGARKESLASAKAADLPLPDTRCTLQPRLRINKATEPATAQQAVRLALDVVVDMGEHSIVPSEATYKTLVEAGRCSALGPALPCSLAGGVRAALDERGLDVLSSACSPKDVYAALKTVGIPESWCYDAGIGNALRGGRRYPAYVAQTYR 343
            A RYNLLL +CAE+G W TA+S YRS +AR       S R +      L  P+VYQHLLRAAKNA PP+PRAAL VL EMR RG  P+A+HYN+VVSACARAAAVA + S    +    T G    C            G K +GNC                 A  L + S GG  +  TE       + C G  +      + R  G    +   AK     LPD  C L       +      A +  RLALDV+ DM +  + P+  T+KTLVE  RC+A    L  ++ GG          + L    +P +VY ALK  GIP  +CY AG+ NAL GGR +P YVA+  R
Sbjct:  159 AARYNLLLVRCAEVGGWATAVSAYRSARARGVITKPLSNRRDAVGSFSLE-PLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSALMPLDRDDTEGHAVLCEDRLYQGIGGADGHKKEGNCG----------------AIHLESDSSGG--VVATENETPKPAKLCSGHEEG--VEENMRLKG----TAFGAKVDVEDLPDRCCLLPTAGDAVECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTLVECCRCAAAASVL--NIGGG----------EGLGKGSTPAEVYTALKEAGIPARFCYQAGLRNALNGGRCFPGYVAEISR 477          
BLAST of mRNA_H-paniculata_contig72.15178.1 vs. uniprot
Match: A0A6H5L7G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G8_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.100e-49
Identity = 140/359 (39.00%), Postives = 178/359 (49.58%), Query Frame = 0
Query:    3 RYNLLLAKCAEIGAWETAISTYRSMKARCDTHNSGSKRGNTTLDQPLPGPIVYQHLLRAAKNAMPPRPRAALSVLWEMRSRGATPSASHYNIVVSACARAAAVAGTQSIASVVHTTG----------ELCSCRSGI---KIKGNCA-----NDGDQGDTGTPGKTEDARDLGASSDGGPDLGKTECNREDSGRKCVGEAKASRTSTSSRKSGARKESLASAKAADLPLPDTRCTLQPRLRINKATEPATAQQAVRLALDVVVDMGEHSIVPSEATYKTLVEAGRCSALGPALPCSLAGGVRAALDERGLDVLSSACSPKDVYAALKTVGIPESWCYDAGIGNALRGGRRYPAYVAQTYR 343
            RYNLLLA+CAE+G W  A+S Y+S +AR       + R +      L  P+VYQHLLRAAKNA PP+PRAAL VL EMR RG  P A+HYN+VVSACARAAAVA + S    +   G           LC    G    K +G C      +D   G   T  +T     LG                  SG KCV  AK  R           K++   AK     +PD  C L       +      A  + RLALDV+ DM    + P+  T+KTLVE  RC+A    L  ++ GG          + L    +P +VY+ALK  GIP  +CY AG+GNA++G R +PAYVA+  R
Sbjct:  161 RYNLLLARCAEVGGWAIAVSAYQSARARGVITKPMNNRRDANPSFSLK-PLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVAASTSALMPLDRDGTEGHAVLREDRLCQDIGGADGHKKEGFCGAIHLESDSSGGVVATENETPKPAKLG------------------SGHKCV--AKNMRL----------KQTAFGAKVDVEDVPDRCCLLPTAGDAMQCRGAEAAGDSWRLALDVIADMRMSGVTPTLVTFKTLVECCRCAAAASVL--NIGGG----------EGLGKGSTPAEVYSALKEAGIPTRFCYQAGLGNAVKGRRCFPAYVAEISR 476          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72.15178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJQ2_ECTSI4.220e-5039.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7G8_9PHAE3.100e-4939.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 54..99
e-value: 0.0025
score: 17.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..140
e-value: 1.4E-10
score: 43.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72contigH-paniculata_contig72:55349..56506 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72.15178.1mRNA_H-paniculata_contig72.15178.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig72 55349..56506 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig72.15178.1 ID=prot_H-paniculata_contig72.15178.1|Name=mRNA_H-paniculata_contig72.15178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
AVRYNLLLAKCAEIGAWETAISTYRSMKARCDTHNSGSKRGNTTLDQPLP
GPIVYQHLLRAAKNAMPPRPRAALSVLWEMRSRGATPSASHYNIVVSACA
RAAAVAGTQSIASVVHTTGELCSCRSGIKIKGNCANDGDQGDTGTPGKTE
DARDLGASSDGGPDLGKTECNREDSGRKCVGEAKASRTSTSSRKSGARKE
SLASAKAADLPLPDTRCTLQPRLRINKATEPATAQQAVRLALDVVVDMGE
HSIVPSEATYKTLVEAGRCSALGPALPCSLAGGVRAALDERGLDVLSSAC
SPKDVYAALKTVGIPESWCYDAGIGNALRGGRRYPAYVAQTYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf