mRNA_H-paniculata_contig72.15178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig72.15178.1
Unique NamemRNA_H-paniculata_contig72.15178.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig72.15178.1 vs. uniprot
Match: D7FJQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ2_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 4.220e-50
Identity = 141/356 (39.61%), Postives = 177/356 (49.72%), Query Frame = 1 
Query:    1 AVRYNLLLAKCAEIGAWETAISTYRSMKARCDTHNSGSKRGNTTLDQPLPGPIVYQHLLRAAKNAMPPRPRAALSVLWEMRSRGATPSASHYNIVVSACARAAAVAGTQSIASVVH---TTGELCSCRS----------GIKIKGNCANDGDQGDTGTPGKTEDARDLGASSDGGPDLGKTECNREDSGRKCVGEAKASRTSTSSRKSGARKESLASAKAADLPLPDTRCTLQPRLRINKATEPATAQQAVRLALDVVVDMGEHSIVPSEATYKTLVEAGRCSALGPALPCSLAGGVRAALDERGLDVLSSACSPKDVYAALKTVGIPESWCYDAGIGNALRGGRRYPAYVAQTYR 1029
            A RYNLLL +CAE+G W TA+S YRS +AR       S R +      L  P+VYQHLLRAAKNA PP+PRAAL VL EMR RG  P+A+HYN+VVSACARAAAVA + S    +    T G    C            G K +GNC                 A  L + S GG  +  TE       + C G  +      + R  G    +   AK     LPD  C L       +      A +  RLALDV+ DM +  + P+  T+KTLVE  RC+A    L  ++ GG          + L    +P +VY ALK  GIP  +CY AG+ NAL GGR +P YVA+  R
Sbjct:  159 AARYNLLLVRCAEVGGWATAVSAYRSARARGVITKPLSNRRDAVGSFSLE-PLVYQHLLRAAKNATPPQPRAALLVLREMRLRGEEPAATHYNLVVSACARAAAVAASTSALMPLDRDDTEGHAVLCEDRLYQGIGGADGHKKEGNCG----------------AIHLESDSSGG--VVATENETPKPAKLCSGHEEG--VEENMRLKG----TAFGAKVDVEDLPDRCCLLPTAGDAVECRGAEAAGETWRLALDVIADMRKRGVTPTLVTFKTLVECCRCAAAASVL--NIGGG----------EGLGKGSTPAEVYTALKEAGIPARFCYQAGLRNALNGGRCFPGYVAEISR 477
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BLAST of mRNA_H-paniculata_contig72.15178.1 vs. uniprot
Match: A0A6H5L7G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G8_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.100e-49
Identity = 140/359 (39.00%), Postives = 178/359 (49.58%), Query Frame = 1 
Query:    7 RYNLLLAKCAEIGAWETAISTYRSMKARCDTHNSGSKRGNTTLDQPLPGPIVYQHLLRAAKNAMPPRPRAALSVLWEMRSRGATPSASHYNIVVSACARAAAVAGTQSIASVVHTTG----------ELCSCRSGI---KIKGNCA-----NDGDQGDTGTPGKTEDARDLGASSDGGPDLGKTECNREDSGRKCVGEAKASRTSTSSRKSGARKESLASAKAADLPLPDTRCTLQPRLRINKATEPATAQQAVRLALDVVVDMGEHSIVPSEATYKTLVEAGRCSALGPALPCSLAGGVRAALDERGLDVLSSACSPKDVYAALKTVGIPESWCYDAGIGNALRGGRRYPAYVAQTYR 1029
            RYNLLLA+CAE+G W  A+S Y+S +AR       + R +      L  P+VYQHLLRAAKNA PP+PRAAL VL EMR RG  P A+HYN+VVSACARAAAVA + S    +   G           LC    G    K +G C      +D   G   T  +T     LG                  SG KCV  AK  R           K++   AK     +PD  C L       +      A  + RLALDV+ DM    + P+  T+KTLVE  RC+A    L  ++ GG          + L    +P +VY+ALK  GIP  +CY AG+GNA++G R +PAYVA+  R
Sbjct:  161 RYNLLLARCAEVGGWAIAVSAYQSARARGVITKPMNNRRDANPSFSLK-PLVYQHLLRAAKNATPPQPRAALHVLREMRLRGEEPVATHYNLVVSACARAAAVAASTSALMPLDRDGTEGHAVLREDRLCQDIGGADGHKKEGFCGAIHLESDSSGGVVATENETPKPAKLG------------------SGHKCV--AKNMRL----------KQTAFGAKVDVEDVPDRCCLLPTAGDAMQCRGAEAAGDSWRLALDVIADMRMSGVTPTLVTFKTLVECCRCAAAASVL--NIGGG----------EGLGKGSTPAEVYSALKEAGIPTRFCYQAGLGNAVKGRRCFPAYVAEISR 476
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72.15178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJQ2_ECTSI4.220e-5039.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7G8_9PHAE3.100e-4939.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72contigH-paniculata_contig72:55349..56506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1032
Cds size1032
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930876.1186507-CDS-H-paniculata_contig72:55348..556921622930876.1186507-CDS-H-paniculata_contig72:55348..55692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72 55349..55692 -
1691481492.2277884-CDS-H-paniculata_contig72:55348..556921691481492.2277884-CDS-H-paniculata_contig72:55348..55692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72 55349..55692 -
1622930876.133339-CDS-H-paniculata_contig72:55818..565061622930876.133339-CDS-H-paniculata_contig72:55818..56506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72 55819..56506 -
1691481492.2450888-CDS-H-paniculata_contig72:55818..565061691481492.2450888-CDS-H-paniculata_contig72:55818..56506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72 55819..56506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72.15178.1prot_H-paniculata_contig72.15178.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig72 55349..56506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig72.15178.1

>prot_H-paniculata_contig72.15178.1 ID=prot_H-paniculata_contig72.15178.1|Name=mRNA_H-paniculata_contig72.15178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=344bp
AVRYNLLLAKCAEIGAWETAISTYRSMKARCDTHNSGSKRGNTTLDQPLP
GPIVYQHLLRAAKNAMPPRPRAALSVLWEMRSRGATPSASHYNIVVSACA
RAAAVAGTQSIASVVHTTGELCSCRSGIKIKGNCANDGDQGDTGTPGKTE
DARDLGASSDGGPDLGKTECNREDSGRKCVGEAKASRTSTSSRKSGARKE
SLASAKAADLPLPDTRCTLQPRLRINKATEPATAQQAVRLALDVVVDMGE
HSIVPSEATYKTLVEAGRCSALGPALPCSLAGGVRAALDERGLDVLSSAC
SPKDVYAALKTVGIPESWCYDAGIGNALRGGRRYPAYVAQTYR*
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mRNA from alignment at H-paniculata_contig72:55349..56506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig72.15178.1 ID=mRNA_H-paniculata_contig72.15178.1|Name=mRNA_H-paniculata_contig72.15178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig72:55349..56506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTTAGATACAACCTGCTACTGGCAAAGTGTGCCGAAATCGGAGCTTG
GGAGACCGCCATCTCTACGTACCGCTCGATGAAAGCACGATGTGACACAC
ATAATAGCGGCAGCAAGAGGGGAAATACCACACTTGATCAACCTTTGCCA
GGTCCTATCGTATACCAGCACCTGCTCCGCGCGGCCAAGAACGCCATGCC
CCCACGTCCACGGGCAGCGCTGTCTGTCCTGTGGGAAATGCGCTCCAGAG
GCGCTACCCCTTCGGCTTCTCATTATAACATCGTTGTGAGCGCGTGTGCT
CGCGCTGCAGCCGTGGCGGGTACCCAAAGCATCGCAAGTGTCGTGCATAC
CACTGGTGAGCTGTGTTCTTGTCGAAGCGGAATCAAAATAAAAGGCAACT
GTGCGAATGATGGCGACCAGGGTGATACGGGTACACCTGGCAAAACCGAG
GACGCAAGAGACCTGGGCGCGAGCTCGGACGGTGGTCCTGATCTCGGCAA
GACTGAGTGTAACCGGGAAGACAGCGGGAGGAAGTGCGTAGGTGAGGCCA
AAGCCAGTCGTACTAGTACCAGCAGCAGAAAATCAGGGGCCAGAAAGGAA
AGTTTAGCATCGGCCAAAGCCGCCGATCTTCCTTTGCCCGACACACGCTG
CACATTACAGCCGAGGTTACGAATCAATAAGGCCACTGGTAATGCCTTAA
ATGATGGGGGGGCACTTACGCTCCGTCGACGCCCGCGGTTCCGCCTTGGA
ACTAGCAGCATTGCTGGCGCCGTTACAGACACGTCCAAAATGGCATCACA
ATCAAGCACCTCAGAACCGGCAACAGCGCAGCAGGCGGTGCGGCTCGCCT
TAGACGTCGTTGTCGATATGGGTGAACACAGCATTGTTCCTAGTGAGGCC
ACATACAAGACTTTGGTAGAGGCGGGTCGGTGTTCCGCTCTTGGGCCGGC
ACTACCTTGTTCTCTTGCTGGGGGGGTTAGAGCGGCGCTTGACGAGAGGG
GATTAGATGTGCTGTCCTCGGCATGTTCGCCAAAAGATGTCTATGCTGCG
TTGAAAACTGTTGGAATTCCGGAAAGTTGGTGTTACGATGCCGGCATCGG
AAACGCGTTGAGAGGAGGGCGTCGATACCCTGCTTACGTTGCGCAAACCT
ATCGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig72:55349..56506-

>mRNA_H-paniculata_contig72.15178.1 ID=mRNA_H-paniculata_contig72.15178.1|Name=mRNA_H-paniculata_contig72.15178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2064bp|location=Sequence derived from alignment at H-paniculata_contig72:55349..56506- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTTAGATACAACCTGCTACTGGCAAAGTGTGCCGAAATCGGAGCTTG
GGAGACCGCCATCTCTACGTACCGCTCGATGAAAGCACGATGTGACACAC
ATAATAGCGGCAGCAAGAGGGGAAATACCACACTTGATCAACCTTTGCCA
GGTCCTATCGTATACCAGCACCTGCTCCGCGCGGCCAAGAACGCCATGCC
CCCACGTCCACGGGCAGCGCTGTCTGTCCTGTGGGAAATGCGCTCCAGAG
GCGCTACCCCTTCGGCTTCTCATTATAACATCGTTGTGAGCGCGTGTGCT
CGCGCTGCAGCCGTGGCGGGTACCCAAAGCATCGCAAGTGTCGTGCATAC
CACTGGTGAGCTGTGTTCTTGTCGAAGCGGAATCAAAATAAAAGGCAACT
GTGCGAATGATGGCGACCAGGGTGATACGGGTACACCTGGCAAAACCGAG
GACGCAAGAGACCTGGGCGCGAGCTCGGACGGTGGTCCTGATCTCGGCAA
GACTGAGTGTAACCGGGAAGACAGCGGGAGGAAGTGCGTAGGTGAGGCCA
AAGCCAGTCGTACTAGTACCAGCAGCAGAAAATCAGGGGCCAGAAAGGAA
AGTTTAGCATCGGCCAAAGCCGCCGATCTTCCTTTGCCCGACACACGCTG
CACATTACAGCCGAGGTTACGAATCAATAAGGCCACTGGCGGTTAGATAC
AACCTGCTACTGGCAAAGTGTGCCGAAATCGGAGCTTGGGAGACCGCCAT
CTCTACGTACCGCTCGATGAAAGCACGATGTGACACACATAATAGCGGCA
GCAAGAGGGGAAATACCACACTTGATCAACCTTTGCCAGGTCCTATCGTA
TACCAGCACCTGCTCCGCGCGGCCAAGAACGCCATGCCCCCACGTCCACG
GGCAGCGCTGTCTGTCCTGTGGGAAATGCGCTCCAGAGGCGCTACCCCTT
CGGCTTCTCATTATAACATCGTTGTGAGCGCGTGTGCTCGCGCTGCAGCC
GTGGCGGGTACCCAAAGCATCGCAAGTGTCGTGCATACCACTGGTGAGCT
GTGTTCTTGTCGAAGCGGAATCAAAATAAAAGGCAACTGTGCGAATGATG
GCGACCAGGGTGATACGGGTACACCTGGCAAAACCGAGGACGCAAGAGAC
CTGGGCGCGAGCTCGGACGGTGGTCCTGATCTCGGCAAGACTGAGTGTAA
CCGGGAAGACAGCGGGAGGAAGTGCGTAGGTGAGGCCAAAGCCAGTCGTA
CTAGTACCAGCAGCAGAAAATCAGGGGCCAGAAAGGAAAGTTTAGCATCG
GCCAAAGCCGCCGATCTTCCTTTGCCCGACACACGCTGCACATTACAGCC
GAGGTTACGAATCAATAAGGCCACTGAACCGGCAACAGCGCAGCAGGCGG
TGCGGCTCGCCTTAGACGTCGTTGTCGATATGGGTGAACACAGCATTGTT
CCTAGTGAGGCCACATACAAGACTTTGGTAGAGGCGGGTCGGTGTTCCGC
TCTTGGGCCGGCACTACCTTGTTCTCTTGCTGGGGGGGTTAGAGCGGCGC
TTGACGAGAGGGGATTAGATGTGCTGTCCTCGGCATGTTCGCCAAAAGAT
GTCTATGCTGCGTTGAAAACTGTTGGAATTCCGGAAAGTTGGTGTTACGA
TGCCGGCATCGGAAACGCGTTGAGAGGAGGGCGTCGATACCCTGCTTACG
TTGCGCAAACCTATCGATAGAACCGGCAACAGCGCAGCAGGCGGTGCGGC
TCGCCTTAGACGTCGTTGTCGATATGGGTGAACACAGCATTGTTCCTAGT
GAGGCCACATACAAGACTTTGGTAGAGGCGGGTCGGTGTTCCGCTCTTGG
GCCGGCACTACCTTGTTCTCTTGCTGGGGGGGTTAGAGCGGCGCTTGACG
AGAGGGGATTAGATGTGCTGTCCTCGGCATGTTCGCCAAAAGATGTCTAT
GCTGCGTTGAAAACTGTTGGAATTCCGGAAAGTTGGTGTTACGATGCCGG
CATCGGAAACGCGTTGAGAGGAGGGCGTCGATACCCTGCTTACGTTGCGC
AAACCTATCGATAG
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