prot_H-paniculata_contig71950.15172.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig71950.15172.1
Unique Nameprot_H-paniculata_contig71950.15172.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length87
Homology
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.370e-9
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 0
Query:    1 LFSNDCTTPKNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            ++  D    K+ E++  V   +L H+R GH+         ++      K  K KPGVC  CE+ K +K+   T   ER  EPLELVHTD+ GPV+
Sbjct:    1 MYMLDYYYGKSREEANVVYSPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIK-KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVE 94          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.280e-9
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 0
Query:   10 KNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            K+ E++  V   +L H+R GH+         ++      K  K KPG+C+ CE+ K +K+   T   ER  EPLELVHTD+ GPV+
Sbjct:   60 KSREEANVVSSPELWHQRFGHINYEYLRQMGEIDDTGVPKGIK-KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVE 144          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: A0A0H2R8D4_9AGAM (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2R8D4_9AGAM)

HSP 1 Score: 57.8 bits (138), Expect = 7.630e-9
Identity = 32/101 (31.68%), Postives = 47/101 (46.53%), Query Frame = 0
Query:    1 LFSNDCTTPKNNEKSQQVVDTKLLHERLGHV--------------RDVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            L+    T   + +++   +D  +LH R+GH+              +D+ TV         P +C  C  GK  K P K    +RTT PLE VH+D+ GPVD
Sbjct:    9 LYQLHATPAIHQDQAMAAIDINVLHRRMGHIGIDRLQRMVTKGQLKDIDTVLGS------PQLCEPCVLGKLKKLPFKHEESQRTTRPLERVHSDVGGPVD 103          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-8
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 0
Query:    1 LFSNDCTTPKNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            ++  D    K+ E++  V   +L H+R GH+         ++      K  K KPGVC  CE+ K +K+   T   ER  EPLELVHTD+ GPV+
Sbjct:    1 MYMLDYYYGKSREEANVVYAPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIK-KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVE 94          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.900e-8
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 0
Query:   10 KNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            K+ E++  V   +L H+R GH+         ++      K  K KPGVC  CE+ K +K+   T   ER  EPLELVHTD+ GPV+
Sbjct:   56 KSCEEANVVSTPELWHQRFGHINYEYLKQMGEIDDTGVPKGIK-KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVE 140          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 57.4 bits (137), Expect = 6.510e-8
Identity = 31/73 (42.47%), Postives = 41/73 (56.16%), Query Frame = 0
Query:   23 LLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            L H+R GH+         ++      K  K KPGVC+ CE+ K +K+   T   ER  EPLELVHTD+ GPV+
Sbjct:    3 LWHQRFGHINYEYLRQMGEIDDTGVPKGIK-KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVE 74          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.230e-7
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 0
Query:   46 KPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            KPGVC  CE+ K +K+   T   ER  EPLELVHTD+ GPV+
Sbjct:   15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVE 56          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7THS2_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THS2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.330e-6
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 0
Query:   10 KNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 87
            +++E++  V   +L HERLGH          ++      K  K KPGVC   E+ K +K    T   ER  +PLELVHTD+ GPV+
Sbjct:  123 ESHEEANMVSSPELWHERLGHTNFKYLRQMGEIHGTGIPKGIK-KPGVCGPYERAKQTKVSFGTKSRERAEKPLELVHTDVLGPVE 207          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: A0A5N6LQL6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LQL6_9ASTR)

HSP 1 Score: 54.3 bits (129), Expect = 1.500e-6
Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 0
Query:   13 EKSQQVVDTKLLHERLGHVR--------------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPV 86
            EK++    T+L H+RLGHV                +P +  QKD     GVCS C+ GKA + P K+   +  T PLELVHTD+ GPV
Sbjct:  500 EKTKGNQTTELWHQRLGHVGLDKLSLIVKQKLLVGLPNLEVQKD-----GVCSGCQYGKAIQLPFKSSEYKAAT-PLELVHTDVFGPV 581          
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: A0A2K3NI74_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NI74_TRIPR)

HSP 1 Score: 53.1 bits (126), Expect = 3.830e-6
Identity = 30/93 (32.26%), Postives = 46/93 (49.46%), Query Frame = 0
Query:    2 FSNDCTTPKNNEKSQQVVDTKLLHERLGHVRDVPTVARQKDN--------KVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPV 86
            F+ D    +     ++V  T L H+RLGH      +  +K+N        +V P  C AC+ GK  + P +     R T+ L+LVHTD+ GP+
Sbjct:  439 FALDFMNKEQAAMHKEVSSTMLWHKRLGHFHHAALIFMKKNNLVNDLPKLEVMPPECIACQYGKQKRLPFQQNNTWRATQKLQLVHTDVGGPM 531          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TGQ6_9STRA6.370e-936.84Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7T9I7_9STRA7.280e-938.37Copia-like retrotransposable element n=1 Tax=Nanno... [more]
A0A0H2R8D4_9AGAM7.630e-931.68gag_pre-integrs domain-containing protein (Fragmen... [more]
W7TIQ5_9STRA1.360e-836.84Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA1.900e-839.53Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
K8YS61_NANGC6.510e-842.47Retrovirus-related pol polyprotein from transposon... [more]
W7SYS1_9STRA4.230e-757.14Retrovirus-related pol polyprotein from transposon... [more]
W7THS2_9STRA1.330e-638.37Retrovirus-related pol polyprotein from transposon... [more]
A0A5N6LQL6_9ASTR1.500e-640.91Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A2K3NI74_TRIPR3.830e-632.26Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71950contigH-paniculata_contig71950:310..570 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71950.15172.1mRNA_H-paniculata_contig71950.15172.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig71950 310..570 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig71950.15172.1 ID=prot_H-paniculata_contig71950.15172.1|Name=mRNA_H-paniculata_contig71950.15172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
LFSNDCTTPKNNEKSQQVVDTKLLHERLGHVRDVPTVARQKDNKVKPGVC
SACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD
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