mRNA_H-paniculata_contig71950.15172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 6.370e-9 Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1
Query: 1 LFSNDCTTPKNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
++ D K+ E++ V +L H+R GH+ ++ K K KPGVC CE+ K +K+ T ER EPLELVHTD+ GPV+
Sbjct: 1 MYMLDYYYGKSREEANVVYSPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIK-KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVE 94
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 7.280e-9 Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 28 KNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
K+ E++ V +L H+R GH+ ++ K K KPG+C+ CE+ K +K+ T ER EPLELVHTD+ GPV+
Sbjct: 60 KSREEANVVSSPELWHQRFGHINYEYLRQMGEIDDTGVPKGIK-KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVE 144
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: A0A0H2R8D4_9AGAM (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2R8D4_9AGAM) HSP 1 Score: 57.8 bits (138), Expect = 7.630e-9 Identity = 32/101 (31.68%), Postives = 47/101 (46.53%), Query Frame = 1
Query: 1 LFSNDCTTPKNNEKSQQVVDTKLLHERLGHV--------------RDVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
L+ T + +++ +D +LH R+GH+ +D+ TV P +C C GK K P K +RTT PLE VH+D+ GPVD
Sbjct: 9 LYQLHATPAIHQDQAMAAIDINVLHRRMGHIGIDRLQRMVTKGQLKDIDTVLGS------PQLCEPCVLGKLKKLPFKHEESQRTTRPLERVHSDVGGPVD 103
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 1.360e-8 Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1
Query: 1 LFSNDCTTPKNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
++ D K+ E++ V +L H+R GH+ ++ K K KPGVC CE+ K +K+ T ER EPLELVHTD+ GPV+
Sbjct: 1 MYMLDYYYGKSREEANVVYAPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIK-KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVE 94
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.900e-8 Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 1
Query: 28 KNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
K+ E++ V +L H+R GH+ ++ K K KPGVC CE+ K +K+ T ER EPLELVHTD+ GPV+
Sbjct: 56 KSCEEANVVSTPELWHQRFGHINYEYLKQMGEIDDTGVPKGIK-KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVE 140
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 57.4 bits (137), Expect = 6.510e-8 Identity = 31/73 (42.47%), Postives = 41/73 (56.16%), Query Frame = 1
Query: 67 LLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
L H+R GH+ ++ K K KPGVC+ CE+ K +K+ T ER EPLELVHTD+ GPV+
Sbjct: 3 LWHQRFGHINYEYLRQMGEIDDTGVPKGIK-KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVE 74
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 4.230e-7 Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1
Query: 136 KPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
KPGVC CE+ K +K+ T ER EPLELVHTD+ GPV+
Sbjct: 15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVE 56
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: W7THS2_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THS2_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.330e-6 Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 28 KNNEKSQQVVDTKLLHERLGHVR--------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
+++E++ V +L HERLGH ++ K K KPGVC E+ K +K T ER +PLELVHTD+ GPV+
Sbjct: 123 ESHEEANMVSSPELWHERLGHTNFKYLRQMGEIHGTGIPKGIK-KPGVCGPYERAKQTKVSFGTKSRERAEKPLELVHTDVLGPVE 207
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: A0A5N6LQL6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LQL6_9ASTR) HSP 1 Score: 54.3 bits (129), Expect = 1.500e-6 Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 1
Query: 37 EKSQQVVDTKLLHERLGHVR--------------DVPTVARQKDNKVKPGVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPV 258
EK++ T+L H+RLGHV +P + QKD GVCS C+ GKA + P K+ + T PLELVHTD+ GPV
Sbjct: 500 EKTKGNQTTELWHQRLGHVGLDKLSLIVKQKLLVGLPNLEVQKD-----GVCSGCQYGKAIQLPFKSSEYKAAT-PLELVHTDVFGPV 581
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Match: A0A438DQG7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DQG7_VITVI) HSP 1 Score: 53.1 bits (126), Expect = 3.830e-6 Identity = 32/86 (37.21%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 22 TPKNNEKSQQVVDTKLLHERLGHVRDVPTVARQKDNKVKP------GVCSACEKGKASKQPIKTYREERTTEPLELVHTDIAGPVD 261
TPK + S DT L H RLGH+ KD +K VC +C +GK +K+P + + ER PLE++HTD+ GP++
Sbjct: 8 TPKRRKISNDKNDTYLWHLRLGHINIGRIERLAKDGPLKELKVGTLPVCESCLEGKMTKRPF-SAKGERAKVPLEIIHTDVCGPLN 92 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71950.15172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig71950.15172.1 >prot_H-paniculata_contig71950.15172.1 ID=prot_H-paniculata_contig71950.15172.1|Name=mRNA_H-paniculata_contig71950.15172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp LFSNDCTTPKNNEKSQQVVDTKLLHERLGHVRDVPTVARQKDNKVKPGVCback to top mRNA from alignment at H-paniculata_contig71950:310..570- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig71950.15172.1 ID=mRNA_H-paniculata_contig71950.15172.1|Name=mRNA_H-paniculata_contig71950.15172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig71950:310..570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig71950:310..570- >mRNA_H-paniculata_contig71950.15172.1 ID=mRNA_H-paniculata_contig71950.15172.1|Name=mRNA_H-paniculata_contig71950.15172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig71950:310..570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |