prot_H-paniculata_contig7188.15164.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7188.15164.1
Unique Nameprot_H-paniculata_contig7188.15164.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length194
Homology
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 1.270e-65
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 0
Query:   82 LNVCS--NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 193
            +  CS  NNIM+PKENK +RKL+Y+C+RC Y+ED +SGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS
Sbjct:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.030e-42
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 0
Query:   87 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 192
            NNI++PKEN+  R L YAC+RC Y+E+    SCVY NNL+ T   KLDIV  DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+  CG KWV
Sbjct:    8 NNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS)

HSP 1 Score: 110 bits (275), Expect = 5.910e-28
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 0
Query:   87 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 193
            ++++YPKEN+ ERKL+YAC  C Y E    G  +Y+N L    GN L  V + V DDPTL RS+NA C+KC +NEAVFFQ+D    ++ +L+LIFVC N  C HKWV+
Sbjct:    8 SSMLYPKENRNERKLLYACRLCRYTE-YAPGQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI)

HSP 1 Score: 110 bits (275), Expect = 6.440e-28
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 0
Query:   87 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 191
            NNI+YP+ENKAE++L YAC RC + ED E  SCVYRN +  TA  +  ++Q DV  DPTL RSK   C  C + EAVFFQA    + + ++L FVC N  C H+W
Sbjct:   11 NNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: UPI001BF53CE6 (Uncharacterized protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI001BF53CE6)

HSP 1 Score: 108 bits (271), Expect = 5.900e-27
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 0
Query:   85 CSNNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 191
            CSNNI+YPKE++A + L+YAC +C ++E  +S +CVYRN +   AG    ++  DV  DPTL R+K+  C  C + EAVFFQA    +   ++L FVC N +CGH+W
Sbjct:   38 CSNNILYPKEDRANKVLLYACRKCEHQEVADS-NCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSVRCAACGHGEAVFFQATTRGED-GMTLFFVCCNPSCGHRW 142          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: UPI00192A156F (DNA-directed RNA polymerases II, IV and V subunit 9A-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A156F)

HSP 1 Score: 105 bits (262), Expect = 5.660e-26
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 0
Query:   87 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 191
            NNI+YPKENK ++ L++AC  C ++E + + +CVYRN ++ + G +  ++Q DV  DPTL R+K   C KCN+ E VFFQA    + + ++L FVC N  CGH+W
Sbjct:   11 NNILYPKENKEQKTLLFACRNCEHQE-ISNDNCVYRNEVLHSVGERTQVLQ-DVAADPTLPRTKTIRCTKCNHPEVVFFQAAARGE-EGMTLFFVCCNPDCGHRW 112          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A6J1AX74_9ROSI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6J1AX74_9ROSI)

HSP 1 Score: 105 bits (261), Expect = 8.000e-26
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 0
Query:   87 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 191
            NNI+YPKE++ ++ L+YAC  C ++E V   +CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:   11 NNILYPKEDREQKILLYACRNCDHQE-VADNNCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI)

HSP 1 Score: 104 bits (260), Expect = 1.130e-25
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 0
Query:   87 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 191
            NNI+YPKE++ ++ L+YAC  C ++E  E  +CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:   11 NNILYPKEDREQKILLYACRNCDHQEVAED-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A0K9RIQ4_SPIOL (DNA-directed RNA polymerase subunit n=3 Tax=Spermatophyta TaxID=58024 RepID=A0A0K9RIQ4_SPIOL)

HSP 1 Score: 104 bits (259), Expect = 1.600e-25
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 0
Query:   87 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 191
            NNI+YPKE+K ++ L YAC  C ++E  E+ +CVYRN +    G +  ++Q DV  DPTL R+K+  C +CN+ EAVFFQA    + + ++L FVC N +CGH+W
Sbjct:   11 NNILYPKEDKDQKILQYACRNCDHQEIAEN-NCVYRNEIHHAVGERTQVLQ-DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGE-EGMTLFFVCCNPSCGHRW 112          
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.820e-25
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   88 NIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 192
            N+  P+E +  R L+  C  C Y+E   S   VY N +      +LDI+  ++ DDPTLQRS + +CE CNY+EAV FQA+ G  ++SLSLIFVC N  C HKW+
Sbjct:   41 NMWQPREERTTRTLMLNCRNCGYEEPATSYK-VYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI1.270e-6586.84TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA5.030e-4266.04DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
B8BUI2_THAPS5.910e-2851.85DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A1Y1IMB2_KLENI6.440e-2851.43DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
UPI001BF53CE65.900e-2746.73Uncharacterized protein n=1 Tax=Sorghum bicolor Ta... [more]
UPI00192A156F5.660e-2645.71DNA-directed RNA polymerases II, IV and V subunit ... [more]
A0A6J1AX74_9ROSI8.000e-2647.62DNA-directed RNA polymerase subunit n=2 Tax=Malvac... [more]
A0A6P5Z8D8_DURZI1.130e-2547.62DNA-directed RNA polymerase subunit n=2 Tax=Malvac... [more]
A0A0K9RIQ4_SPIOL1.600e-2546.67DNA-directed RNA polymerase subunit n=3 Tax=Sperma... [more]
A0A7S3NJ32_9STRA1.820e-2546.67Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 152..193
e-value: 0.0023
score: 21.3
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 153..191
e-value: 4.4E-5
score: 23.2
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 150..192
score: 9.338
NoneNo IPR availableGENE3D2.20.25.10coord: 124..193
e-value: 6.3E-21
score: 75.7
NoneNo IPR availableGENE3D2.20.25.10coord: 71..123
e-value: 1.4E-12
score: 48.9
NoneNo IPR availablePANTHERPTHR11239:SF1DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9coord: 86..192
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 86..192
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 131..191
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 86..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7188contigH-paniculata_contig7188:6691..8456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7188.15164.1mRNA_H-paniculata_contig7188.15164.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7188 1655..9278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7188.15164.1 ID=prot_H-paniculata_contig7188.15164.1|Name=mRNA_H-paniculata_contig7188.15164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MTDYSGNTCHLNLLASFEDPQTLWTVLLYRSPISLWPSEIDLVNGLTKKR
TTRKTQVPPPSLYHSSVHVAQVIFCAPSLLILNVCSNNIMYPKENKAERK
LVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSK
NAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS