mRNA_H-paniculata_contig7188.15164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7188.15164.1
Unique NamemRNA_H-paniculata_contig7188.15164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 7.910e-58
Identity = 99/114 (86.84%), Postives = 107/114 (93.86%), Query Frame = 3 
Query: 5280 LNVCS--NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 5615
            +  CS  NNIM+PKENK +RKL+Y+C+RC Y+ED +SGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS
Sbjct:  124 MRFCSECNNIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS 237
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.930e-37
Identity = 70/106 (66.04%), Postives = 84/106 (79.25%), Query Frame = 3 
Query: 5295 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 5612
            NNI++PKEN+  R L YAC+RC Y+E+    SCVY NNL+ T   KLDIV  DVV+DPTLQRSK+ IC++CNY+EAVFFQAD+ AKS SLSLIFVCT+  CG KWV
Sbjct:    8 NNILHPKENRTTRTLFYACNRCAYREEAGQ-SCVYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSLSLIFVCTH--CGKKWV 110
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS)

HSP 1 Score: 110 bits (275), Expect = 1.420e-24
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 3 
Query: 5295 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEG-AKSQSLSLIFVCTNRACGHKWVS 5615
            ++++YPKEN+ ERKL+YAC  C Y E    G  +Y+N L    GN L  V + V DDPTL RS+NA C+KC +NEAVFFQ+D    ++ +L+LIFVC N  C HKWV+
Sbjct:    8 SSMLYPKENRNERKLLYACRLCRYTE-YAPGQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A1Y1IMB2_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMB2_KLENI)

HSP 1 Score: 110 bits (275), Expect = 1.550e-24
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 3 
Query: 5295 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 5609
            NNI+YP+ENKAE++L YAC RC + ED E  SCVYRN +  TA  +  ++Q DV  DPTL RSK   C  C + EAVFFQA    + + ++L FVC N  C H+W
Sbjct:   11 NNILYPRENKAEKRLEYACGRCDFSEDAEQ-SCVYRNEIHHTADERTQVLQ-DVTSDPTLPRSKALRCPVCKHGEAVFFQATSRGE-EGMTLFFVCCNPNCQHRW 112
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: UPI001BF53CE6 (Uncharacterized protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI001BF53CE6)

HSP 1 Score: 108 bits (271), Expect = 1.290e-23
Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 3 
Query: 5289 CSNNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 5609
            CSNNI+YPKE++A + L+YAC +C ++E  +S +CVYRN +   AG    ++  DV  DPTL R+K+  C  C + EAVFFQA    +   ++L FVC N +CGH+W
Sbjct:   38 CSNNILYPKEDRANKVLLYACRKCEHQEVADS-NCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSVRCAACGHGEAVFFQATTRGED-GMTLFFVCCNPSCGHRW 142
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: UPI00192A156F (DNA-directed RNA polymerases II, IV and V subunit 9A-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A156F)

HSP 1 Score: 105 bits (262), Expect = 8.550e-23
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 3 
Query: 5295 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 5609
            NNI+YPKENK ++ L++AC  C ++E + + +CVYRN ++ + G +  ++Q DV  DPTL R+K   C KCN+ E VFFQA    + + ++L FVC N  CGH+W
Sbjct:   11 NNILYPKENKEQKTLLFACRNCEHQE-ISNDNCVYRNEVLHSVGERTQVLQ-DVAADPTLPRTKTIRCTKCNHPEVVFFQAAARGE-EGMTLFFVCCNPDCGHRW 112
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A6J1AX74_9ROSI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6J1AX74_9ROSI)

HSP 1 Score: 105 bits (261), Expect = 1.170e-22
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 3 
Query: 5295 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 5609
            NNI+YPKE++ ++ L+YAC  C ++E V   +CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:   11 NNILYPKEDREQKILLYACRNCDHQE-VADNNCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI)

HSP 1 Score: 104 bits (260), Expect = 1.590e-22
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 3 
Query: 5295 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 5609
            NNI+YPKE++ ++ L+YAC  C ++E  E  +CVYRN +  +AG +  I+Q DV  DPTL R+K+ IC  C + EAVFFQA    + + ++L FVC N  CGH+W
Sbjct:   11 NNILYPKEDREQKILLYACRNCDHQEVAED-NCVYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQATARGE-EGMTLFFVCCNPNCGHRW 112
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A0K9RIQ4_SPIOL (DNA-directed RNA polymerase subunit n=3 Tax=Spermatophyta TaxID=58024 RepID=A0A0K9RIQ4_SPIOL)

HSP 1 Score: 104 bits (259), Expect = 2.170e-22
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 3 
Query: 5295 NNIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKW 5609
            NNI+YPKE+K ++ L YAC  C ++E  E+ +CVYRN +    G +  ++Q DV  DPTL R+K+  C +CN+ EAVFFQA    + + ++L FVC N +CGH+W
Sbjct:   11 NNILYPKEDKDQKILQYACRNCDHQEIAEN-NCVYRNEIHHAVGERTQVLQ-DVAADPTLPRTKSVRCTQCNHGEAVFFQATSRGE-EGMTLFFVCCNPSCGHRW 112
[Close]
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Match: A0A7S3NJ32_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJ32_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.780e-22
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 3 
Query: 5298 NIMYPKENKAERKLVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWV 5612
            N+  P+E +  R L+  C  C Y+E   S   VY N +      +LDI+  ++ DDPTLQRS + +CE CNY+EAV FQA+ G  ++SLSLIFVC N  C HKW+
Sbjct:   41 NMWQPREERTTRTLMLNCRNCGYEEPATSYK-VYENRIKKEVSTRLDIINPEITDDPTLQRSNDVVCENCNYSEAVLFQAESGITAKSLSLIFVCCN--CKHKWI 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7188.15164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE56_ECTSI7.910e-5886.84TFIIS-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A835YYP5_9STRA3.930e-3766.04DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
B8BUI2_THAPS1.420e-2451.85DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A1Y1IMB2_KLENI1.550e-2451.43DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
UPI001BF53CE61.290e-2346.73Uncharacterized protein n=1 Tax=Sorghum bicolor Ta... [more]
UPI00192A156F8.550e-2345.71DNA-directed RNA polymerases II, IV and V subunit ... [more]
A0A6J1AX74_9ROSI1.170e-2247.62DNA-directed RNA polymerase subunit n=2 Tax=Malvac... [more]
A0A6P5Z8D8_DURZI1.590e-2247.62DNA-directed RNA polymerase subunit n=2 Tax=Malvac... [more]
A0A0K9RIQ4_SPIOL2.170e-2246.67DNA-directed RNA polymerase subunit n=3 Tax=Sperma... [more]
A0A7S3NJ32_9STRA2.780e-2246.67Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7188contigH-paniculata_contig7188:1655..9278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue4.7e-52
Seed eggNOG ortholog2880.D8LE56
Preferred namePOLR2I
KEGG rclassRC02795
KEGG koko:K03017
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0001192,GO:0001193,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0042221,GO:0042795,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and or for immediate growth after restoration of oxygen
EggNOG OGsCOG1594@1,KOG2691@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Exons3
Model size6440
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7188.15164.1prot_H-paniculata_contig7188.15164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7188 6691..8456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.0693173-UTR-H-paniculata_contig7188:1654..66901622930873.0693173-UTR-H-paniculata_contig7188:1654..6690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7188 1655..6690 +
1691481490.6171575-UTR-H-paniculata_contig7188:1654..66901691481490.6171575-UTR-H-paniculata_contig7188:1654..6690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7188 1655..6690 +
1622930873.136539-UTR-H-paniculata_contig7188:8456..92781622930873.136539-UTR-H-paniculata_contig7188:8456..9278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7188 8457..9278 +
1691481490.6664128-UTR-H-paniculata_contig7188:8456..92781691481490.6664128-UTR-H-paniculata_contig7188:8456..9278Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7188 8457..9278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930873.0877235-CDS-H-paniculata_contig7188:6690..70791622930873.0877235-CDS-H-paniculata_contig7188:6690..7079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7188 6691..7079 +
1691481490.6330945-CDS-H-paniculata_contig7188:6690..70791691481490.6330945-CDS-H-paniculata_contig7188:6690..7079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7188 6691..7079 +
1622930873.1077657-CDS-H-paniculata_contig7188:7397..75151622930873.1077657-CDS-H-paniculata_contig7188:7397..7515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7188 7398..7515 +
1691481490.6444077-CDS-H-paniculata_contig7188:7397..75151691481490.6444077-CDS-H-paniculata_contig7188:7397..7515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7188 7398..7515 +
1622930873.1230485-CDS-H-paniculata_contig7188:8381..84561622930873.1230485-CDS-H-paniculata_contig7188:8381..8456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7188 8382..8456 +
1691481490.6552458-CDS-H-paniculata_contig7188:8381..84561691481490.6552458-CDS-H-paniculata_contig7188:8381..8456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7188 8382..8456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7188.15164.1

>prot_H-paniculata_contig7188.15164.1 ID=prot_H-paniculata_contig7188.15164.1|Name=mRNA_H-paniculata_contig7188.15164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MTDYSGNTCHLNLLASFEDPQTLWTVLLYRSPISLWPSEIDLVNGLTKKR
TTRKTQVPPPSLYHSSVHVAQVIFCAPSLLILNVCSNNIMYPKENKAERK
LVYACSRCTYKEDVESGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSK
NAICEKCNYNEAVFFQADEGAKSQSLSLIFVCTNRACGHKWVS*
back to top

mRNA from alignment at H-paniculata_contig7188:1655..9278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7188.15164.1 ID=mRNA_H-paniculata_contig7188.15164.1|Name=mRNA_H-paniculata_contig7188.15164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7624bp|location=Sequence derived from alignment at H-paniculata_contig7188:1655..9278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGAATACAGTCGTTCTAAGCGCCTCTACTGTATGCTGCACGATCATCT
CTTTGCACGTAAACGACGTCTCTGACCTCTGCCAGGGCAATAAAATCGCA
GTGCTTAACCGAGTTGGTCAACTTCTCTCCTGCTGGCAAGGACTCTCTGT
ACTGACTGTTGTACTACCAGCACCCTTCTTGTGCCGCAAAATTTAAATTT
TGAGCACTCTCTTCTGAGGTGCCGCACCTCACTAGTACAGTACAACATAG
CGAGGTGCCAGCAGCAGCGAGCGAGGCGCCTGACCAAAAACCTCATCAAC
AAGTGAGTTACACGCGACATGATCGTGAGTAGTAGGCAATACAGCTGTTG
TCGTCTATTGTGCTGCCTAGTACTGCATACTCAGGTGAGGACCTGGTGTG
ATTTTTGTCTATATAGACAGAGAGTACAGAGTACAGCACCTTCAGGAGAA
GCGATCTGGGATGATTTTTATTTTTCTGCATTCTAAAAAGAAAAAAAAAA
CTATTTAAATCCTCGTTTTTTCCTGGCGTCACGCCTACACCTACTTAGAG
TGAGTTAATTTGATATTAGTTTTTGTTGATCGATTTTTCACCATTTTTTT
GGATTGTAGTGTCCAAGCAACTATCTTTGATGACCCCTTGACTGCTCCGC
TATCGCTTCAGCAACGATAGCCTTATCCGAAAGGAATGCATCGTGACGAA
TTCATCAAAAGGGCTGCCTTCTAAGCGTGCTTCCACACCCTCGGTGTCAT
CATCGGCAGCATAAAATTCTAACCGTCGCCTGCTTAGTGTCAACGCAAGT
GTCAATTTCGGGGTCGAGATGCCATCGTGTCACATTCTTGATCATCGGAC
CACGTGCCCGTGCATGCTGCGTCTACCGGCAACAGTTCAGGTGTCTGGTA
TCTCAGTATCCGGCTGCATGTGATAGGCATCAATGCCTCATTCTGCTCTG
CCAGATACTCGTTAAACTGAAGATTGCACACCATCTACATCACTTGCCTT
ATGAGTTTAGGAAACAATACGTTTGACTGCATGCTTCGGACACGCGTGTT
TCCCCGGAATATCGGCGCTGGATAGCGGAGGAAGTTGTGAACTACATTTC
CCCCATCCCCACGACGGTGTCAAACTTACACATGCTATCGTTATCGCCGA
GACACTCCATACACAACGCCCGTGGAACTTGATGAAGAAAACGAGTCGTT
CCCACACGCGGTATCAATGTGGGAACGGTCAACGATTGTACACTTGGCGT
TTGTTAGACCGCTCGCGAACCCTCGTCGGCAATCCTGGCGCTCTCTGAAT
TGCCCAACGCACCCCGGTAAAAAGAGTAACGGACCGGAGTTCCGGGAACT
GTGAATGAAAAGGGAGACATACTTTTAACATCCAGACACTCACGACCGGA
GCCGATTATACCACCGGCACGCACTCGAAAATCGCACTCCAGTGCTAAAA
GAAACATATACGTAAATCCCAGTAATTGTGGAACATGTTGGTAATACTTG
AGTATCACGCTGGTCATGATTGGAGACCAAAACCCAATGTGCCTCTAGCG
GCGCTGTTCTCCTTTGGCGGAAACTGACGCATTGCTTGTCGCGGATAAGG
GAATGTAACCATTAAAAAAATACTAAAGTCAGAGTGAGGGGGCCCAAGCC
CCTCCAGATCTGTTTTTTGGTCACCTACATTCGTTTTTTGGCAGCGATCT
TTGAACACTCGACATTCTTTGAGTCAAGACGAATTGCGTGTAGATCTTCG
ACCACTACGCCCTCCCCTTGGATGTTTAACTGGATTTTCCGGGCGATAAG
GAGGCCTTCTGAACTCAGTTGGTACAAAGGGGTTGATAGTGTACTCAATT
ACTGTTAGGAGAAGCGATCTGGGTGATTTCTCGTGGAGATCGTGTTCCAT
AAAAAACACAAAAATTTACACGGTTCAACCCCAATTATCCAATCAAATGA
AACTACGAGCGTATTTGAATTCAAACACTGGCGTAATTTTTTTTTTTATC
CTTACACAGAATAGCCAGTAATCATCATGCGATTGCATCAAGAACATGAA
ATGAGTGCTGCTGCCCTGCGCGGCTGTGATACCCATCAGCACATATAGAC
AGACAGATAGTACAGACAACAGTCAGTAGTACAATCAACAGTGCCACGAT
AAAATGGAGCATTCTTCTCCGTCACGACCTGCACCCTTCCTGGTCACTCT
TACTGAGCTGGCAAGGCTTTCGTAGGACTCTGACTGTTGTCCTGGTCGAA
AATCGGCTCGATCCTGGGTCTTGAATCGACCGTGTGAACTCACTCTTTGG
AGTCTTTCTTGCCCATCTTAGAAACAGTCCAACTTTTGAACTACTGAGAC
GCGTCGAGCGTCGCTTGGTGTGTCTTGTGTGCGAAAAACCCAGCTAGGAA
AGCATTAGATCAGATTTTCGAGCGCAGGTGCATTTCTCTAATAAAATAGT
GAATCGACGTTCCTCACTTTTTTCCTGACGCGCTCAAAATTCTGATCTAA
GGAGATCCTAACTCTTTTTTGTAGAAATCTAGTGGTACTAGTATCAATGC
TGGAATCGTTGCCAGTCAGCAAATGGACTGCTTATAACGGGAAAAGCGGA
TTGATGAGCACAAAGGGCAACTACCTCGTATTTGATTCCAGTGTTGGCAC
TCCAGCAACATCAATGGGCTGGCAAGGCGCAAAATACATGAAGGTCGCTG
CAGACTACTACAACAGAATATGTTCTTGGGATGTATTGATGCACGAATAC
GAGAACAAAACCGGCCGCAACATGTTTGTTTTTCTTTTCAACATTTGCTA
TCAAATTATAAGCTTGTGAAAGCAACGAGCTGAATTTGCGACGTAAACGT
GTGCTTACAGCCAATGCCGCAGGCTGGTGTCCCGCCAAAAATGTAACTAA
AAAATCCGGTGATCCTTTTTATCACAGCTGAGAGGTATGGGTTCCAAAAA
TATGGATTTTGATGACCCCCTGGGGCAGCAGTCAGGATATTGCCAACTCG
CTGAAGCACGCCGGTATGCCGACACATTGACCACTCCTCCATCAAGTGAC
ATAGCAGTATACCAGTATTCTCGGAGGATAATTTTTCGAGAGTTTATGCT
GCTGGAGGTCAACATTGGGCCCAGTGGAATGGGGTATACTTTTGCTTCCG
TCACGCAGACTTGACACCACGCCTCATAACACTGCCGCCATTAGATACAA
GCGTACACGGTTGCAGGATCGATTATATCCTCCAAGTACTTCAATTTTTA
TTCTTGCGTGAGCCTGGGTGAAGCTCCATCGTTATCCATTGTGGGTGAGG
ATACCAAAGGCGGCGGGAGCCCACACTACTACTACATGCATGCTTGGGAG
AAAATGGCTGAGATCGAAAGATACGGGCTGCAGGATGTTCGCCACCGCAC
GGATATCACGAGCAGAGATGCTACATCGCAACCCATGTGGCTCTTGGAGA
CGAATCTCCCTGTAGAAAGTGGGACCTTCGGCAACGGCTTACTGCATGAA
CCAGGTCAAAGTGTACCCGAAGCCTATATAACTAGATGTAAAAGGAAGTA
GCCCTACAACTCTGGACGCCGGACGGAGCTGAGTGAAGTCACCTGTTGTA
CTGGCTACGTACTGTATGTGCTGCGTATATCAAGCGTATACACTCCATCG
TTTCGAGAGAGCTTGATCTACAACGAGTGTCGGAGCTGCAGTGGACCATG
TAATACATACACTAAATGCGTAGTGGGAGAACCAACTGGCGCTATCATGA
CCATCCACAATCGTGGCGATCCTCACTGCCTGCTGCTGCTTTGTCTTCTG
CGTGTTCTACAGTGTGGATGTTTAGTTCATCGATTGCTATGCGCAATAGC
CCTGCTGAATGACTCACGACTCTGAATACGTTTGTTCTATGGAGGAGTAG
CCACGAATCAACTAATGCTATATTCAATTTGCGACGAACAAGACTTCTCT
CGCCTGTAATATCGCCTCTATAGTTCTTTTCTAGCATATAACCTCTTTTT
GTATGGGAAAAAATGGTACTAAACAGATGCCGAAAAATAGTTTTTGAAGG
GGCTAGTCCCTAAAGGTTCAATAGTGCACTGTAATGTACAGAGTGCAGAC
GATTCAGTTCATAAGTCCCGCTCGAGTAGATGCAGGGGTGACACCAGAAA
CAGACACAAGAGGAGGGCGGCACCTAGTATGCTGATGTGACAACTGGCTG
TTGGGCCAGCGATTCCACTCGATTGTATGTGAATTTTTAGGTTGGTGGAA
AATAGACAAACCAAAAAATGTGAAGACATTTTGTCTGCCGAGCCGCTTAT
TGCCGTTTGCGCTGTTCCGACTCGTGACTCTGGATGTTTGCTGCTTGGGA
CGGTCTGTCCCCACCAACCACCCATCTCATTTTAGTGGCGGACACTATGC
GATTCTGCAACGAGTGGTGAGTGCGGTGCAGTGCTGAAGTTGCCGCACAC
TCATGATGCTGATTGCCTGTTGTTGTAGCTCGCTGTTGATTACTTTTCCT
GTTGACACGGGTAACGTTTCTTGCGCCATGAGATGGCTGATGTAGTAGAT
GATGGCGTTGGCTTTTTCAATCCCTGTACCGATGGTAGTGTTGCATAGCA
CAGATGAAACGAGGCATAACCGGAAGACCTATCTAGGAGGCGAATGTGGG
CCGAACGTGCAGTACGTTGGTGCTGCACGGCGGTCTAGACCAACGATGAC
CAGGATGGAATCTAATGTGCAATAGGGTATGAAATTTGCCATGACTGACT
GGACATGAGAGTGTCGCGAAAGAAATGGTCGGAATACGGGCCGAAATAAC
CCCAGTAAATACAGGAGATCTTTTCAACTTGGTCAAAGCCTCTGTCTGCA
GCTGAAAGCTCTAGTCCACGGTACAGTAGCACGTAACCACTTTCTCGGGT
TTCGCGTTTGGAACCACGTACATACTGTATATGTGGTGGGGAGGACTTTG
TTTATCAGTAGCTTCGTCTCGTTGCCGATAGGGTCGAAGGCCAATCCGAA
AATGGAATTTGTGCCAACTGCAGACTGGAAATCGCCATGACCGATTACTC
CGGAAACACTTGTCACCTCAATTTGCTTGCTTCTTTCGAAGATCCTCAGA
CGCTGTGGACCGTGTTGTTATATCGCTCCCCTATATCGCTCTGGCCATCG
GAAATCGATTTGGTCAATGGTCTAACGAAAAAACGTACGACGCGCAAAAC
ACAAGTACCTCCCCCCTCCCTGTATCACTCTTCTGTACACGTGGCCCAAG
TGATTTTCTGCGCCCCGTCTCTCCTCATCCTGAACGTGTGCAGCAATAAC
ATCATGTATCCAAAGGAGAACAAGGCGGAGCGAAAGTTGGTATACGCGTG
CAGCCGCTGTACGTACAAGGAAGATGTGGAGTCTGGGTCGTGCGTGTACA
GGAATAACCTCATCACCACAGCAGGGTCAGTGCTGCGCTGTGTGCATCTT
CCACCCTCCACAACATGCGCTTGAAATAATGTTTCACCGAAACCTTGCGC
AGTGCAGTTGAAGTGGAATGCATTATGGCTGGAACCTTGAAGTAAGGTAG
AATATTGAATACTGTCATTCTGAGCTTAAAGCTCCCACTACTCATGAGCG
GATTGTGATATGTCTCCTCTCGCTCCTGACGTTGACGGAGAGGTCTCGTG
GTGCTTTTACGCATCCTGTGTCCGCCTCATACATTTTGCACTCTCTGGCG
TCTTTTGCACCAAATTTTGAGTTTTTTTGTTGACTTGTTTCAGGAACAAA
TTGGACATTGTACAAACGGACGTCGTGGACGACCCCACGTTACAACGAAG
CAAGAACGCCATCTGCGAAAAGTGTAACTACAACGAGGCTGTTTTCTTCC
AGGCAGATGAGGCAAGTCAATTGACCATTTTGGATTATTAGAAGTGAACA
CCATGTTCATGTCTGATTTAGAATCAGAACTGCAAATTATCCCTACTGCA
GGTATTGTCATGATTAAGGCAATTTTGTAGATCACTCGCAGGAATGCCGC
TATTACGCCAGTGGCTCGTGACACTTTGAAAAACCTCTTGGATAGAGAAT
CAAAAACGCTCTGAGGGAGCGTCATCATCATCATAATGACCGTCGTCAAT
AGAAAAGGATCACTCAATTCGTTCGTTGTGTGTTTACCTGCTGGTGATGC
CCACCTGTGTTTGTTTCGGCGTCCACAGTACTAATCTTTCAGTGTCAGTA
GTGCATTTTTTTTGTGCGGCGGGTACCTCTTATAGGAGGCATAACTGTAA
TGTGATTTGTGTTAATAATATGCAGAATCTGACCATTTTTATGCAACTTC
AAACGAACCCTACTGTTGGGTATCTCACCAATACTGGCATCATTGATATA
CTCACGTTGCCGATATAGTAAAGCGCGCAACAGTAGAGTCGCACCGTAAG
ACTAACCTCTCTCGTTTCCAAACCGCTAGGCGCCATGTTCCTCTTGCAGT
AGAGTGCCAAGCGGCGATGTGACGATTCACCGTCTTCAGTTTCCCTACAC
ATATATTTTGACCCCTTTTTGGATGTGTTAACTGTTAGTTACATGTTTCA
TTTCACGGAAGGGTGATTTGTTCATTGGTCACGAACCATGTCCAGTTTGA
TGTTTGTTGAAATCATACAGATCCTCAGTACAGACTTTTTGATGAGTTGC
TGCAGTCCTCACACCCCGAAAGTGCTTTGTCTTGCTTTGTCGGTCGCAAA
ACTCGGTGTTTTGTTTGTCATTACCAGGGAGCAAAGTCTCAAAGCCTGTC
GCTTATCTTCGTGTGTACAAATCGCGCGTGCGGACACAAATGGGTAAGCT
GAGAGCCACAATACGTGTGTGCGATTTCTCAAGGCCAGAGTCGGAATATC
CAACGGTATCAAGTGCTACAGTGAGGGGATGGGGGCTGTGGCGAGGCGGG
GCGATATATAGCATTTCGTTGAGAGCGCACTCTGGCTTGCGAGTATGCAT
GGGACCCAAGCTGAGGAACCCCTTTGCCGATATCGTGGCCGAAGTGAAGC
GCGTTGCAAGACCGCGATTTGGAAAATAAATCCGCAGTTGTTTGTAGTGG
GTCAATGGGGGTCTGCTTGGCAGGCTGGAGGTGGCTTTGTTAACTAGAGT
TTCAGAGTCAGGAACTTAGTGTGCGTCAGACTCCCCAATATTATATACTG
ACATACATTTTGTGTGATTGCGGCGCTCTGTGGCTGGTTCGAGATGTAGA
TGCCTGAGTTGGGGTGTGTCCGAACTTGGTGGACTGTCCACCGTTCTGCA
GCTTTTTATGAGATCACAGATCGTACACTGATGATGCACGTGCGTAGTCG
TTTTTTTTCAAAGCTGTGAGGTGAGACACTGTACGACACTTCGTGCTTTA
TAATGTACGTGAGTATCTTTTTTTGGCTGATCAGTATGAGAAATTGGGCG
TCATGTATCACAAGCTACATACGACACCCGCTGTGTTAGGTTCGTTGGCA
GGAGACCTGCTAAGCGAGCATATCGCACGTTGCTCTGGAGAGGTAATTCA
TCTCCATGTGACTGTGCCCCCAATACGCCCAGTGGTGCACCTCAGCACAA
ATTGACCCTGTTTTGTGTCGTTTATGATGTGCGAGTGAAGTTTTTGTGGC
AATGTGAGGACGTTGTGATTGAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7188:1655..9278+

>mRNA_H-paniculata_contig7188.15164.1 ID=mRNA_H-paniculata_contig7188.15164.1|Name=mRNA_H-paniculata_contig7188.15164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig7188:1655..9278+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGATTACTCCGGAAACACTTGTCACCTCAATTTGCTTGCTTCTTT
CGAAGATCCTCAGACGCTGTGGACCGTGTTGTTATATCGCTCCCCTATAT
CGCTCTGGCCATCGGAAATCGATTTGGTCAATGGTCTAACGAAAAAACGT
ACGACGCGCAAAACACAAGTACCTCCCCCCTCCCTGTATCACTCTTCTGT
ACACGTGGCCCAAGTGATTTTCTGCGCCCCGTCTCTCCTCATCCTGAACG
TGTGCAGCAATAACATCATGTATCCAAAGGAGAACAAGGCGGAGCGAAAG
TTGGTATACGCGTGCAGCCGCTGTACGTACAAGGAAGATGTGGAGTCTGG
GTCGTGCGTGTACAGGAATAACCTCATCACCACAGCAGGATGACCGATTA
CTCCGGAAACACTTGTCACCTCAATTTGCTTGCTTCTTTCGAAGATCCTC
AGACGCTGTGGACCGTGTTGTTATATCGCTCCCCTATATCGCTCTGGCCA
TCGGAAATCGATTTGGTCAATGGTCTAACGAAAAAACGTACGACGCGCAA
AACACAAGTACCTCCCCCCTCCCTGTATCACTCTTCTGTACACGTGGCCC
AAGTGATTTTCTGCGCCCCGTCTCTCCTCATCCTGAACGTGTGCAGCAAT
AACATCATGTATCCAAAGGAGAACAAGGCGGAGCGAAAGTTGGTATACGC
GTGCAGCCGCTGTACGTACAAGGAAGATGTGGAGTCTGGGTCGTGCGTGT
ACAGGAATAACCTCATCACCACAGCAGGGAACAAATTGGACATTGTACAA
ACGGACGTCGTGGACGACCCCACGTTACAACGAAGCAAGAACGCCATCTG
CGAAAAGTGTAACTACAACGAGGCTGTTTTCTTCCAGGCAGATGAGGAAC
AAATTGGACATTGTACAAACGGACGTCGTGGACGACCCCACGTTACAACG
AAGCAAGAACGCCATCTGCGAAAAGTGTAACTACAACGAGGCTGTTTTCT
TCCAGGCAGATGAGGGAGCAAAGTCTCAAAGCCTGTCGCTTATCTTCGTG
TGTACAAATCGCGCGTGCGGACACAAATGGGTAAGCTGAGGAGCAAAGTC
TCAAAGCCTGTCGCTTATCTTCGTGTGTACAAATCGCGCGTGCGGACACA
AATGGGTAAGCTGA
back to top