prot_H-paniculata_contig7130.15107.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7130.15107.1
Unique Nameprot_H-paniculata_contig7130.15107.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length108
Homology
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: D8LD33_ECTSI (50S ribosomal protein L4P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD33_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.260e-48
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 0
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 96
            +L P+VFGV +RRDVVH+V+RWQLA+RRKGN +TKRIGEI GSGRKVRPQKG G+ARAGHSRPPHWRGGAKAHGPR RD+S+KLNKKFV+LGLRV+
Sbjct:  115 SLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVA 210          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A6H5KTL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.130e-47
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 0
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 96
            +L P+VFGV +RRDVVH+V+RWQLA+RRKGN +TKRIGEI GSGRKVRPQKG G+ARAGHSRPPHWRGGAKAHGPR RD+S+KLNKKFV+LGLRV+
Sbjct:  193 SLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVA 288          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A835ZAZ5_9STRA (Ribosomal protein L4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.000e-38
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0
Query:    2 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPR-IRDWSYKLNKKFVKLGLRVS 96
            LDP +FG  IRRDVVH V+RWQLA RR+G AKTK I E+ GSG+K+RPQKG G AR GH RPPHWRGGAKAHGP+  RDWSYKL+KK  K+GLRV+
Sbjct:  150 LDPFIFGHEIRRDVVHAVVRWQLACRRQGAAKTKLISEVSGSGKKMRPQKGSGQARCGHKRPPHWRGGAKAHGPKGNRDWSYKLHKKVRKMGLRVA 245          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A7S2DV07_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DV07_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.440e-32
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 0
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRD-WSYKLNKKFVKLGLRVSAELEHATG 104
            +LD  VFG  +R D++H V+RWQLAKRR+G A TK I E+ GSG+K+RPQKG G ARAGHSRPPHWR GA AHGPR    W++KLNKK  +LGL  +   + + G
Sbjct:  141 SLDSRVFGRPLRIDILHQVVRWQLAKRRRGTAHTKNISEVSGSGKKMRPQKGTGQARAGHSRPPHWRHGAVAHGPRGETIWTFKLNKKVRRLGLLTALSQKLSEG 245          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A6G0XNJ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNJ9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.180e-28
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 0
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELEHATG 104
            TL  +VFG  +R+D++H V++WQLA RR GN KTK   E+ GS +KV  QKG G AR G+ RPP WRGG +AHGP +RD SY L KK   +GLRV+   + A G
Sbjct:   80 TLSRSVFGTPVRKDLLHRVVKWQLANRRSGNHKTKTRSEVSGSTKKVWKQKGSGRARVGNRRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEG 183          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: F0VZD3_9STRA (50S ribosomal protein L4 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZD3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.430e-28
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 0
Query:    2 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 96
            LDP+VF V +R+D++H V+RWQLA RR GN K K   E RGS RKVRPQKG G AR G  R P WRGG   HGP +RD SY L KK    G+RV+
Sbjct:   89 LDPSVFNVPLRKDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKGSGQARVGDVRAPQWRGGYCVHGPVVRDHSYTLQKKVRAFGIRVA 183          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A1V9ZKR4_9STRA (50S ribosomal protein L4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZKR4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.650e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 0
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELEHATG 104
            +L+ +VFG  +R+D++H V++WQLA RR GN KTK   E+ GS RK   QKG G AR G+ RPP WRGG +AHGP +RD SY L KK   +GLRV+   + A G
Sbjct:   73 SLNRSVFGAPLRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTRKAWAQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKMAEG 176          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: W7T0B7_9STRA (50s ribosomal protein l4 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0B7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.670e-28
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 0
Query:    2 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRV--SAELEHATGHRQ 107
            LD  VFGV +R+D++H ++ WQ AK+R G A+TKR+G+IRGS +K+RPQKG G ARAG      +RGGAKAHGP  RD+S+KLN+K   LG+R+  SA+     G R+
Sbjct:  262 LDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGRE 369          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A9UV13_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UV13_MONBE)

HSP 1 Score: 109 bits (273), Expect = 1.380e-27
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 0
Query:    2 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 96
            LDP VFG  IR D++H V+ WQ A  RKGNAKTK  GE+RG GRK  PQKG G AR G  R P+WRGG   HGP  RDWS KL +K  + G+RV+
Sbjct:   18 LDPTVFGEEIRVDIMHRVVVWQRALWRKGNAKTKTRGEVRGGGRKPHPQKGTGRARTGSIRVPNWRGGGVVHGPIPRDWSQKLPRKVRQKGVRVA 112          
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A024UTI0_9STRA (50S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UTI0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.550e-27
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELEHATG 104
            TL+  VFG  +R+D++H V++WQLA RR GN KTK   E+ GS +K   QKG G AR G+ RPP WRGG +AHGP +RD SY L KK   +GLRV+   + A G
Sbjct:   98 TLNRNVFGCPVRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTKKAWKQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEG 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD33_ECTSI3.260e-4881.2550S ribosomal protein L4P n=1 Tax=Ectocarpus silic... [more]
A0A6H5KTL0_9PHAE2.130e-4781.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAZ5_9STRA1.000e-3871.88Ribosomal protein L4 domain-containing protein n=1... [more]
A0A7S2DV07_9STRA1.440e-3259.05Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6G0XNJ9_9STRA3.180e-2853.85Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0VZD3_9STRA7.430e-2858.9550S ribosomal protein L4 putative n=1 Tax=Albugo l... [more]
A0A1V9ZKR4_9STRA7.650e-2852.8850S ribosomal protein L4 n=1 Tax=Thraustotheca cla... [more]
W7T0B7_9STRA7.670e-2853.7050s ribosomal protein l4 (Fragment) n=1 Tax=Nannoc... [more]
A9UV13_MONBE1.380e-2758.95Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A024UTI0_9STRA3.550e-2752.8850S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 2..95
e-value: 5.0E-35
score: 120.9
IPR023574Ribosomal protein L4 domain superfamilyGENE3D3.40.1370.10coord: 1..102
e-value: 6.6E-40
score: 138.9
IPR023574Ribosomal protein L4 domain superfamilySUPERFAMILY52166Ribosomal protein L4coord: 2..95
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 1..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7130contigH-paniculata_contig7130:10186..10910 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7130.15107.1mRNA_H-paniculata_contig7130.15107.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7130 10186..10910 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7130.15107.1 ID=prot_H-paniculata_contig7130.15107.1|Name=mRNA_H-paniculata_contig7130.15107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQ
KGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELE
HATGHRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002136Ribosomal_L4/L1e
IPR023574Ribosomal_L4_dom_sf
IPR013005Ribosomal_uL4/L1e