mRNA_H-paniculata_contig7130.15107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7130.15107.1
Unique NamemRNA_H-paniculata_contig7130.15107.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: D8LD33_ECTSI (50S ribosomal protein L4P n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD33_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.260e-48
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 288
            +L P+VFGV +RRDVVH+V+RWQLA+RRKGN +TKRIGEI GSGRKVRPQKG G+ARAGHSRPPHWRGGAKAHGPR RD+S+KLNKKFV+LGLRV+
Sbjct:  115 SLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVA 210
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A6H5KTL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.130e-47
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 288
            +L P+VFGV +RRDVVH+V+RWQLA+RRKGN +TKRIGEI GSGRKVRPQKG G+ARAGHSRPPHWRGGAKAHGPR RD+S+KLNKKFV+LGLRV+
Sbjct:  193 SLAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHSRPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVA 288
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A835ZAZ5_9STRA (Ribosomal protein L4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.000e-38
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 1 
Query:    4 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPR-IRDWSYKLNKKFVKLGLRVS 288
            LDP +FG  IRRDVVH V+RWQLA RR+G AKTK I E+ GSG+K+RPQKG G AR GH RPPHWRGGAKAHGP+  RDWSYKL+KK  K+GLRV+
Sbjct:  150 LDPFIFGHEIRRDVVHAVVRWQLACRRQGAAKTKLISEVSGSGKKMRPQKGSGQARCGHKRPPHWRGGAKAHGPKGNRDWSYKLHKKVRKMGLRVA 245
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A7S2DV07_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DV07_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.440e-32
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRD-WSYKLNKKFVKLGLRVSAELEHATG 312
            +LD  VFG  +R D++H V+RWQLAKRR+G A TK I E+ GSG+K+RPQKG G ARAGHSRPPHWR GA AHGPR    W++KLNKK  +LGL  +   + + G
Sbjct:  141 SLDSRVFGRPLRIDILHQVVRWQLAKRRRGTAHTKNISEVSGSGKKMRPQKGTGQARAGHSRPPHWRHGAVAHGPRGETIWTFKLNKKVRRLGLLTALSQKLSEG 245
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A6G0XNJ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNJ9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.180e-28
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELEHATG 312
            TL  +VFG  +R+D++H V++WQLA RR GN KTK   E+ GS +KV  QKG G AR G+ RPP WRGG +AHGP +RD SY L KK   +GLRV+   + A G
Sbjct:   80 TLSRSVFGTPVRKDLLHRVVKWQLANRRSGNHKTKTRSEVSGSTKKVWKQKGSGRARVGNRRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEG 183
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: F0VZD3_9STRA (50S ribosomal protein L4 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZD3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.430e-28
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    4 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 288
            LDP+VF V +R+D++H V+RWQLA RR GN K K   E RGS RKVRPQKG G AR G  R P WRGG   HGP +RD SY L KK    G+RV+
Sbjct:   89 LDPSVFNVPLRKDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKGSGQARVGDVRAPQWRGGYCVHGPVVRDHSYTLQKKVRAFGIRVA 183
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A1V9ZKR4_9STRA (50S ribosomal protein L4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZKR4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.650e-28
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELEHATG 312
            +L+ +VFG  +R+D++H V++WQLA RR GN KTK   E+ GS RK   QKG G AR G+ RPP WRGG +AHGP +RD SY L KK   +GLRV+   + A G
Sbjct:   73 SLNRSVFGAPLRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTRKAWAQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKMAEG 176
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: W7T0B7_9STRA (50s ribosomal protein l4 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0B7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.670e-28
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:    4 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRV--SAELEHATGHRQ 321
            LD  VFGV +R+D++H ++ WQ AK+R G A+TKR+G+IRGS +K+RPQKG G ARAG      +RGGAKAHGP  RD+S+KLN+K   LG+R+  SA+     G R+
Sbjct:  262 LDSRVFGVPVRKDIIHRLVTWQRAKQRVGMARTKRVGDIRGSTKKLRPQKGTGRARAGKKHAAQFRGGAKAHGPVPRDFSFKLNRKVRALGVRMALSAKAREGEGGRE 369
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A9UV13_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UV13_MONBE)

HSP 1 Score: 109 bits (273), Expect = 1.380e-27
Identity = 56/95 (58.95%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:    4 LDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVS 288
            LDP VFG  IR D++H V+ WQ A  RKGNAKTK  GE+RG GRK  PQKG G AR G  R P+WRGG   HGP  RDWS KL +K  + G+RV+
Sbjct:   18 LDPTVFGEEIRVDIMHRVVVWQRALWRKGNAKTKTRGEVRGGGRKPHPQKGTGRARTGSIRVPNWRGGGVVHGPIPRDWSQKLPRKVRQKGVRVA 112
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BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Match: A0A024UTI0_9STRA (50S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UTI0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.550e-27
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQKGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELEHATG 312
            TL+  VFG  +R+D++H V++WQLA RR GN KTK   E+ GS +K   QKG G AR G+ RPP WRGG +AHGP +RD SY L KK   +GLRV+   + A G
Sbjct:   98 TLNRNVFGCPVRKDILHRVVKWQLANRRSGNHKTKTRSEVSGSTKKAWKQKGSGRARVGNIRPPQWRGGYRAHGPVVRDHSYSLPKKVRAMGLRVALSTKLAEG 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7130.15107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD33_ECTSI3.260e-4881.2550S ribosomal protein L4P n=1 Tax=Ectocarpus silic... [more]
A0A6H5KTL0_9PHAE2.130e-4781.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAZ5_9STRA1.000e-3871.88Ribosomal protein L4 domain-containing protein n=1... [more]
A0A7S2DV07_9STRA1.440e-3259.05Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6G0XNJ9_9STRA3.180e-2853.85Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0VZD3_9STRA7.430e-2858.9550S ribosomal protein L4 putative n=1 Tax=Albugo l... [more]
A0A1V9ZKR4_9STRA7.650e-2852.8850S ribosomal protein L4 n=1 Tax=Thraustotheca cla... [more]
W7T0B7_9STRA7.670e-2853.7050s ribosomal protein l4 (Fragment) n=1 Tax=Nannoc... [more]
A9UV13_MONBE1.380e-2758.95Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A024UTI0_9STRA3.550e-2752.8850S ribosomal protein L4 n=3 Tax=Aphanomyces TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7130contigH-paniculata_contig7130:10186..10910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog2880.D8LD33
Preferred nameyml6
KEGG koko:K02926
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022626,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0088@1,KOG1624@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930864.2542644-CDS-H-paniculata_contig7130:10185..102841622930864.2542644-CDS-H-paniculata_contig7130:10185..10284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7130 10186..10284 +
1691481486.8552632-CDS-H-paniculata_contig7130:10185..102841691481486.8552632-CDS-H-paniculata_contig7130:10185..10284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7130 10186..10284 +
1622930864.2780168-CDS-H-paniculata_contig7130:10685..109101622930864.2780168-CDS-H-paniculata_contig7130:10685..10910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7130 10686..10910 +
1691481486.867727-CDS-H-paniculata_contig7130:10685..109101691481486.867727-CDS-H-paniculata_contig7130:10685..10910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7130 10686..10910 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7130.15107.1prot_H-paniculata_contig7130.15107.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7130 10186..10910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7130.15107.1

>prot_H-paniculata_contig7130.15107.1 ID=prot_H-paniculata_contig7130.15107.1|Name=mRNA_H-paniculata_contig7130.15107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
TLDPAVFGVSIRRDVVHDVIRWQLAKRRKGNAKTKRIGEIRGSGRKVRPQ
KGQGMARAGHSRPPHWRGGAKAHGPRIRDWSYKLNKKFVKLGLRVSAELE
HATGHRQ*
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mRNA from alignment at H-paniculata_contig7130:10186..10910+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7130.15107.1 ID=mRNA_H-paniculata_contig7130.15107.1|Name=mRNA_H-paniculata_contig7130.15107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=725bp|location=Sequence derived from alignment at H-paniculata_contig7130:10186..10910+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTGGATCCGGCGGTGTTCGGGGTGTCTATTCGGCGTGACGTGGTGCA
CGATGTCATTCGGTGGCAATTGGCTAAGCGCCGAAAGGGTAACGCGAAGG
TCAGTCGGTAATGTTTGTTGCCGTCCGGGGGGGACTGGCACATAGTCGTG
TTATTGTCTCTTGGTGAAGTCCCGTTGTGCATGAAGGAGACAGTAGACCC
CACTGTCCATATTCCTATGGTGTACAACAAGCGAGTAGCATCAACCTAAT
CCAACAAATTACGACTGATGGAATTATACGATCACCACCAGCTCCGACAG
ATTTATTCAGGTCGTCTAGTACAGGTGAAAGCTCACACCGTTTTATCGGA
CATCTTCTTGCTAAGTAATACGAGAGAAGAAAAACAGTCAACCCAGTCAA
CAGCCAGTCTGAGAATTTTTTGTCCACTCACAAAATATAGGCATACTCGC
CTCAACTCACGTACGTCTTGTTTTCGGCGTTGAACTTGATAATCATTCAG
ACCAAGCGGATAGGGGAAATCCGAGGATCGGGCCGGAAAGTCCGACCCCA
GAAGGGACAGGGCATGGCGCGGGCGGGCCACAGCCGCCCCCCGCACTGGA
GAGGCGGTGCGAAAGCGCATGGACCTCGCATCCGAGACTGGTCATACAAA
CTGAACAAGAAATTTGTCAAGCTGGGCCTAAGGGTGAGTGCTGAGCTTGA
ACATGCAACGGGTCATCGCCAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7130:10186..10910+

>mRNA_H-paniculata_contig7130.15107.1 ID=mRNA_H-paniculata_contig7130.15107.1|Name=mRNA_H-paniculata_contig7130.15107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig7130:10186..10910+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTTGGATCCGGCGGTGTTCGGGGTGTCTATTCGGCGTGACGTGGTGCA
CGATGTCATTCGGTGGCAATTGGCTAAGCGCCGAAAGGGTAACGCGAAGA
CTTTGGATCCGGCGGTGTTCGGGGTGTCTATTCGGCGTGACGTGGTGCAC
GATGTCATTCGGTGGCAATTGGCTAAGCGCCGAAAGGGTAACGCGAAGAC
CAAGCGGATAGGGGAAATCCGAGGATCGGGCCGGAAAGTCCGACCCCAGA
AGGGACAGGGCATGGCGCGGGCGGGCCACAGCCGCCCCCCGCACTGGAGA
GGCGGTGCGAAAGCGCATGGACCTCGCATCCGAGACTGGTCATACAAACT
GAACAAGAAATTTGTCAAGCTGGGCCTAAGGGTGAGTGCTGAGCTTGAAC
ATGCAACGGGTCATCGCCAATAGACCAAGCGGATAGGGGAAATCCGAGGA
TCGGGCCGGAAAGTCCGACCCCAGAAGGGACAGGGCATGGCGCGGGCGGG
CCACAGCCGCCCCCCGCACTGGAGAGGCGGTGCGAAAGCGCATGGACCTC
GCATCCGAGACTGGTCATACAAACTGAACAAGAAATTTGTCAAGCTGGGC
CTAAGGGTGAGTGCTGAGCTTGAACATGCAACGGGTCATCGCCAATAG
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