prot_H-paniculata_contig71029.15070.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig71029.15070.1
Unique Nameprot_H-paniculata_contig71029.15070.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length176
Homology
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-7
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 0
Query:    3 DILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPLQKP-------LVRE----TRSLTTDEQLQLQWSDIQDSLSLTSP 106
            D LS + + ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+ L  +   +            +V E    + SLTTDE     W+ IQ    +++P
Sbjct:  220 DFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMIGASGVIPSRLGPVYTEREALAGSNHRDDFVVGEGGCTSASLTTDELADKTWALIQRGKDVSNP 335          
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.290e-7
Identity = 38/116 (32.76%), Postives = 62/116 (53.45%), Query Frame = 0
Query:    3 DILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPLQKP-------LVRE----TRSLTTDEQLQLQWSDIQDSLSLTSP 106
            D LS + + ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+ L  +   +            +V E    + SLTTDE     W+ IQ    +++P
Sbjct:  220 DFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMIGASGVIPSRLGPVYTEREALAGSNHRDDFVVGEGGCTSASLTTDELADKTWALIQRGKDVSNP 335          
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5JJN6_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 6.780e-7
Identity = 37/116 (31.90%), Postives = 61/116 (52.59%), Query Frame = 0
Query:    3 DILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPLQKP-------LVRET----RSLTTDEQLQLQWSDIQDSLSLTSP 106
            D LS + + ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +  SG+ P+ L  +   +            +V E+     SLTTDE     W+ IQ    +++P
Sbjct:  220 DFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMINASGVLPSRLDPVYTEREALAGSNHRDDFVVGESGCTPASLTTDELADKTWALIQRGKGVSNP 335          
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5JWI6_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.190e-6
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 0
Query:    3 DILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMV 70
            D LS +   ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+  RS P++
Sbjct:  306 DFLSAYTHELKYRPGRENANADLMSRLPLPATKEDEAPYVRLTDPPDLDVYMIGASGVLPS--RSGPVI 372          
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5K4J2_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J2_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.910e-6
Identity = 38/116 (32.76%), Postives = 60/116 (51.72%), Query Frame = 0
Query:    3 DILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPL-------QKPLVRET----RSLTTDEQLQLQWSDIQDSLSLTSP 106
            D LS     ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+ L  +   +            +V E+     SLTTDE     W+ IQ    +++P
Sbjct:  127 DCLSACTNKLKYRPGRDNANADLMSRLPLPATKEDEAPDARLTDPSDLDVYMIGASGVLPSRLGPVYTEREALAGSNHRDDVVVGESGCTPASLTTDELADKTWALIQRGKGVSNP 242          
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5KN45_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN45_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.090e-5
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    3 DILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSL 64
            D LS + + ++Y+PG+ N     +SRLP+PAT++DE    R+  P ++ V  +G SG+ P+ L
Sbjct:  403 DFLSAYTYKLKYRPGRENANVDLMSRLPLPATKEDEAPDVRLTGPSDLDVHMIGASGVLPSRL 465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KAM4_9PHAE1.160e-732.76RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWR4_9PHAE1.290e-732.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJN6_9PHAE6.780e-731.90RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5JWI6_9PHAE1.190e-640.58RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K4J2_9PHAE1.910e-632.76RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KN45_9PHAE1.090e-538.10Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71029contigH-paniculata_contig71029:71..598 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71029.15070.1mRNA_H-paniculata_contig71029.15070.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig71029 40..598 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig71029.15070.1 ID=prot_H-paniculata_contig71029.15070.1|Name=mRNA_H-paniculata_contig71029.15070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENACRMLDPHEVT
VCFVGRSGITPTSLRSIPMVQPLQKPLVRETRSLTTDEQLQLQWSDIQDS
LSLTSPTSTYRTQQPVENIRVLPSNVIVPPSVPPCQGQLNTGIMLHAFPV
APYGPSEDPAPVFSEAQERQTRLFGE
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