mRNA_H-paniculata_contig71029.15070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig71029.15070.1
Unique NamemRNA_H-paniculata_contig71029.15070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5KAM4_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.310e-10
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 2 
Query:    2 LSEKKPKVQRMCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPLQKP-------LVRE----TRSLTTDEQLQLQWSDIQDSLSLTSP 349
            L+EK  +VQR  D LS + + ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+ L  +   +            +V E    + SLTTDE     W+ IQ    +++P
Sbjct:  208 LAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMIGASGVIPSRLGPVYTEREALAGSNHRDDFVVGEGGCTSASLTTDELADKTWALIQRGKDVSNP 335
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BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5JWR4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.700e-10
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 2 
Query:    2 LSEKKPKVQRMCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPLQKP-------LVRE----TRSLTTDEQLQLQWSDIQDSLSLTSP 349
            L+EK  +VQR  D LS + + ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+ L  +   +            +V E    + SLTTDE     W+ IQ    +++P
Sbjct:  208 LAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMIGASGVIPSRLGPVYTEREALAGSNHRDDFVVGEGGCTSASLTTDELADKTWALIQRGKDVSNP 335
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BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5JJN6_9PHAE (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.910e-9
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = 2 
Query:    2 LSEKKPKVQRMCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPLQKP-------LVRET----RSLTTDEQLQLQWSDIQDSLSLTSP 349
            L+EK  +VQR  D LS + + ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +  SG+ P+ L  +   +            +V E+     SLTTDE     W+ IQ    +++P
Sbjct:  208 LAEKNNRVQRWYDFLSAYTYELKYRPGRENANADLMSRLPLPATKEDEAPDVRLTDPSDLDVYMINASGVLPSRLDPVYTEREALAGSNHRDDFVVGESGCTPASLTTDELADKTWALIQRGKGVSNP 335
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BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5K4J2_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.080e-9
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = 2 
Query:    2 LSEKKPKVQRMCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMVQPL-------QKPLVRET----RSLTTDEQLQLQWSDIQDSLSLTSP 349
            L+EK  +VQR  D LS     ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+ L  +   +            +V E+     SLTTDE     W+ IQ    +++P
Sbjct:  115 LAEKNNRVQRWYDCLSACTNKLKYRPGRDNANADLMSRLPLPATKEDEAPDARLTDPSDLDVYMIGASGVLPSRLGPVYTEREALAGSNHRDDVVVGESGCTPASLTTDELADKTWALIQRGKGVSNP 242
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BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5JWI6_9PHAE (RT_RNaseH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.810e-8
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 2 
Query:    5 SEKKPKVQRMCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSLRSIPMV 241
            ++K  +VQR  D LS +   ++Y+PG+ N  A  +SRLP+PAT++DE    R+ DP ++ V  +G SG+ P+  RS P++
Sbjct:  295 ADKNNRVQRWYDFLSAYTHELKYRPGRENANADLMSRLPLPATKEDEAPYVRLTDPPDLDVYMIGASGVLPS--RSGPVI 372
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BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Match: A0A6H5KN45_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN45_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.780e-8
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:    2 LSEKKPKVQRMCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENA-CRMLDPHEVTVCFVGRSGITPTSL 223
            L+EK  +VQ+  D LS + + ++Y+PG+ N     +SRLP+PAT++DE    R+  P ++ V  +G SG+ P+ L
Sbjct:  391 LAEKNNRVQKWYDFLSAYTYKLKYRPGRENANVDLMSRLPLPATKEDEAPDVRLTGPSDLDVHMIGASGVLPSRL 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig71029.15070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KAM4_9PHAE3.310e-1034.38RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWR4_9PHAE3.700e-1034.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJN6_9PHAE1.910e-933.59RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6H5K4J2_9PHAE4.080e-934.38RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JWI6_9PHAE2.810e-840.00RT_RNaseH domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KN45_9PHAE7.780e-838.67Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig71029contigH-paniculata_contig71029:40..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size528
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930858.6252174-UTR-H-paniculata_contig71029:39..701622930858.6252174-UTR-H-paniculata_contig71029:39..70Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig71029 40..70 +
1691481484.4231362-UTR-H-paniculata_contig71029:39..701691481484.4231362-UTR-H-paniculata_contig71029:39..70Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig71029 40..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930858.642319-CDS-H-paniculata_contig71029:70..5981622930858.642319-CDS-H-paniculata_contig71029:70..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71029 71..598 +
1691481484.4336214-CDS-H-paniculata_contig71029:70..5981691481484.4336214-CDS-H-paniculata_contig71029:70..598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig71029 71..598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig71029.15070.1prot_H-paniculata_contig71029.15070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig71029 71..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig71029.15070.1

>prot_H-paniculata_contig71029.15070.1 ID=prot_H-paniculata_contig71029.15070.1|Name=mRNA_H-paniculata_contig71029.15070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=176bp
MCDILSQFQFNMRYKPGKRNQLAGALSRLPVPATEDDENACRMLDPHEVT
VCFVGRSGITPTSLRSIPMVQPLQKPLVRETRSLTTDEQLQLQWSDIQDS
LSLTSPTSTYRTQQPVENIRVLPSNVIVPPSVPPCQGQLNTGIMLHAFPV
APYGPSEDPAPVFSEAQERQTRLFGE
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mRNA from alignment at H-paniculata_contig71029:40..598+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig71029.15070.1 ID=mRNA_H-paniculata_contig71029.15070.1|Name=mRNA_H-paniculata_contig71029.15070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=559bp|location=Sequence derived from alignment at H-paniculata_contig71029:40..598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGTCAGAGAAAAAGCCGAAGGTCCAACGGATGTGCGATATACTTAGCC
AGTTCCAGTTTAATATGCGGTACAAACCCGGCAAGCGGAATCAGTTAGCA
GGTGCCTTGTCCCGTCTGCCCGTCCCTGCCACAGAAGACGACGAAAACGC
TTGCCGTATGCTAGACCCACATGAAGTTACAGTTTGTTTTGTCGGACGCA
GCGGTATTACGCCCACGTCTTTGCGTTCGATTCCGATGGTGCAGCCGCTG
CAGAAGCCACTGGTCCGGGAAACACGTTCCTTGACCACCGACGAGCAACT
GCAATTACAATGGTCAGATATTCAAGACAGTCTTTCGCTCACTAGCCCAA
CATCGACGTATCGTACGCAACAACCCGTTGAGAATATTCGAGTACTGCCT
TCGAATGTTATTGTGCCCCCCTCTGTCCCTCCCTGTCAAGGGCAGCTGAA
TACCGGTATAATGCTCCACGCTTTTCCGGTTGCACCATACGGTCCTTCTG
AGGATCCCGCCCCAGTATTTTCGGAAGCACAAGAGCGACAGACACGCCTT
TTTGGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig71029:40..598+

>mRNA_H-paniculata_contig71029.15070.1 ID=mRNA_H-paniculata_contig71029.15070.1|Name=mRNA_H-paniculata_contig71029.15070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1056bp|location=Sequence derived from alignment at H-paniculata_contig71029:40..598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGATATACTTAGCCAGTTCCAGTTTAATATGCGGTACAAACCCGG
CAAGCGGAATCAGTTAGCAGGTGCCTTGTCCCGTCTGCCCGTCCCTGCCA
CAGAAGACGACGAAAACGCTTGCCGTATGCTAGACCCACATGAAGTTACA
GTTTGTTTTGTCGGACGCAGCGGTATTACGCCCACGTCTTTGCGTTCGAT
TCCGATGGTGCAGCCGCTGCAGAAGCCACTGGTCCGGGAAACACGTTCCT
TGACCACCGACGAGCAACTGCAATTACAATGGTCAGATATTCAAGACAGT
CTTTCGCTCACTAGCCCAACATCGACGTATCGTACGCAACAACCCGTTGA
GAATATTCGAGTACTGCCTTCGAATGTTATTGTGCCCCCCTCTGTCCCTC
CCTGTCAAGGGCAGCTGAATACCGGTATAATGCTCCACGCTTTTCCGGTT
GCACCATACGGTCCTTCTGAGGATCCCGCCCCAGTATTTTCGGAAGCACA
AGAGCGACAGACACGCCTTTTTGGGGAGATGTGCGATATACTTAGCCAGT
TCCAGTTTAATATGCGGTACAAACCCGGCAAGCGGAATCAGTTAGCAGGT
GCCTTGTCCCGTCTGCCCGTCCCTGCCACAGAAGACGACGAAAACGCTTG
CCGTATGCTAGACCCACATGAAGTTACAGTTTGTTTTGTCGGACGCAGCG
GTATTACGCCCACGTCTTTGCGTTCGATTCCGATGGTGCAGCCGCTGCAG
AAGCCACTGGTCCGGGAAACACGTTCCTTGACCACCGACGAGCAACTGCA
ATTACAATGGTCAGATATTCAAGACAGTCTTTCGCTCACTAGCCCAACAT
CGACGTATCGTACGCAACAACCCGTTGAGAATATTCGAGTACTGCCTTCG
AATGTTATTGTGCCCCCCTCTGTCCCTCCCTGTCAAGGGCAGCTGAATAC
CGGTATAATGCTCCACGCTTTTCCGGTTGCACCATACGGTCCTTCTGAGG
ATCCCGCCCCAGTATTTTCGGAAGCACAAGAGCGACAGACACGCCTTTTT
GGGGAG
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