prot_H-paniculata_contig7028.14978.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7028.14978.1
Unique Nameprot_H-paniculata_contig7028.14978.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length57
Homology
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A8C9X5X3_SANLU (Retinoblastoma binding protein 4, like n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9X5X3_SANLU)

HSP 1 Score: 74.3 bits (181), Expect = 3.200e-16
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVS--GCYSLWRHSTVLVF 56
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +++WR S +  F
Sbjct:   11 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVSSWAMWRKSNITTF 66          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A669B092_ORENI (CAF1C_H4-bd domain-containing protein n=8 Tax=Euteleostomi TaxID=117571 RepID=A0A669B092_ORENI)

HSP 1 Score: 72.0 bits (175), Expect = 1.700e-15
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 49
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVWR 58          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A669BZA1_ORENI (CAF1C_H4-bd domain-containing protein n=17 Tax=Euteleostomi TaxID=117571 RepID=A0A669BZA1_ORENI)

HSP 1 Score: 71.6 bits (174), Expect = 2.740e-15
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 49
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   13 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVSRVWR 59          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A7N5ZR26_ANATE (CAF1C_H4-bd domain-containing protein n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N5ZR26_ANATE)

HSP 1 Score: 69.3 bits (168), Expect = 2.690e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVS--GCYSLW 48
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+   G + LW
Sbjct:   11 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVGSWLLW 58          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A4W5Q2S7_9TELE (Retinoblastoma binding protein 4 n=3 Tax=Protacanthopterygii TaxID=41705 RepID=A0A4W5Q2S7_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 2.850e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCY-SLWR 49
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     S+WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRSIWR 59          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A8C2QHW4_CRIGR (CAF1C_H4-bd domain-containing protein n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A8C2QHW4_CRIGR)

HSP 1 Score: 68.6 bits (166), Expect = 4.430e-14
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 49
             EE  I EEYK+WKKN PFLYD+VMTHALEWP     W+     +WR
Sbjct:   12 VEEHVINEEYKIWKKNNPFLYDLVMTHALEWPSLTAQWLPDVTRIWR 58          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A2K6Q1F1_RHIRO (RB binding protein 4, chromatin remodeling factor n=20 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K6Q1F1_RHIRO)

HSP 1 Score: 68.9 bits (167), Expect = 5.320e-14
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCY-SLWR 49
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     S WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRSFWR 59          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A8C3YZT6_9TELE (Histone-binding protein RBBP4-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3YZT6_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 5.700e-14
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 49
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTTQWLPD--VIWR 56          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A4W4EAR2_ELEEL (Histone-binding protein RBBP7 n=9 Tax=Clupeocephala TaxID=186625 RepID=A0A4W4EAR2_ELEEL)

HSP 1 Score: 68.2 bits (165), Expect = 5.840e-14
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    3 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 49
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   11 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPD--VIWR 55          
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A6H5JAT4_9PHAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.140e-14
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 EQAEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYS 46
            E+AEE+ ITEEYKVWKKNTPFLYDVVMTHALEWP     W+    S
Sbjct:   80 EEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWPSLTVQWLPSVKS 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C9X5X3_SANLU3.200e-1657.14Retinoblastoma binding protein 4, like n=1 Tax=San... [more]
A0A669B092_ORENI1.700e-1563.83CAF1C_H4-bd domain-containing protein n=8 Tax=Eute... [more]
A0A669BZA1_ORENI2.740e-1563.83CAF1C_H4-bd domain-containing protein n=17 Tax=Eut... [more]
A0A7N5ZR26_ANATE2.690e-1464.58CAF1C_H4-bd domain-containing protein n=1 Tax=Anab... [more]
A0A4W5Q2S7_9TELE2.850e-1464.58Retinoblastoma binding protein 4 n=3 Tax=Protacant... [more]
A0A8C2QHW4_CRIGR4.430e-1459.57CAF1C_H4-bd domain-containing protein n=1 Tax=Cric... [more]
A0A2K6Q1F1_RHIRO5.320e-1464.58RB binding protein 4, chromatin remodeling factor ... [more]
A0A8C3YZT6_9TELE5.700e-1463.83Histone-binding protein RBBP4-like n=1 Tax=Dentice... [more]
A0A4W4EAR2_ELEEL5.840e-1463.83Histone-binding protein RBBP7 n=9 Tax=Clupeocephal... [more]
A0A6H5JAT4_9PHAE7.140e-1471.74CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..52
e-value: 3.8E-11
score: 44.6
IPR022052Histone-binding protein RBBP4, N-terminalPFAMPF12265CAF1C_H4-bdcoord: 10..40
e-value: 1.1E-11
score: 44.8
NoneNo IPR availablePANTHERPTHR22850WD40 REPEAT FAMILYcoord: 3..42
NoneNo IPR availablePANTHERPTHR22850:SF90HISTONE-BINDING PROTEIN RBBP4coord: 3..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7028contigH-paniculata_contig7028:8696..8866 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7028.14978.1mRNA_H-paniculata_contig7028.14978.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7028 8696..8866 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7028.14978.1 ID=prot_H-paniculata_contig7028.14978.1|Name=mRNA_H-paniculata_contig7028.14978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
EQAEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWRH
STVLVF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR022052Histone-bd_RBBP4_N