mRNA_H-paniculata_contig7028.14978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7028.14978.1
Unique NamemRNA_H-paniculata_contig7028.14978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A8C9X5X3_SANLU (Retinoblastoma binding protein 4, like n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8C9X5X3_SANLU)

HSP 1 Score: 74.3 bits (181), Expect = 3.200e-16
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVS--GCYSLWRHSTVLVF 168
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +++WR S +  F
Sbjct:   11 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVSSWAMWRKSNITTF 66
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A669B092_ORENI (CAF1C_H4-bd domain-containing protein n=8 Tax=Euteleostomi TaxID=117571 RepID=A0A669B092_ORENI)

HSP 1 Score: 72.0 bits (175), Expect = 1.700e-15
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 147
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRVWR 58
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A669BZA1_ORENI (CAF1C_H4-bd domain-containing protein n=17 Tax=Euteleostomi TaxID=117571 RepID=A0A669BZA1_ORENI)

HSP 1 Score: 71.6 bits (174), Expect = 2.740e-15
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 147
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   13 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVSRVWR 59
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A7N5ZR26_ANATE (CAF1C_H4-bd domain-containing protein n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N5ZR26_ANATE)

HSP 1 Score: 69.3 bits (168), Expect = 2.690e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVS--GCYSLW 144
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+   G + LW
Sbjct:   11 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVGSWLLW 58
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A4W5Q2S7_9TELE (Retinoblastoma binding protein 4 n=3 Tax=Protacanthopterygii TaxID=41705 RepID=A0A4W5Q2S7_9TELE)

HSP 1 Score: 69.7 bits (169), Expect = 2.850e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCY-SLWR 147
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     S+WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRSIWR 59
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A8C2QHW4_CRIGR (CAF1C_H4-bd domain-containing protein n=1 Tax=Cricetulus griseus TaxID=10029 RepID=A0A8C2QHW4_CRIGR)

HSP 1 Score: 68.6 bits (166), Expect = 4.430e-14
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 147
             EE  I EEYK+WKKN PFLYD+VMTHALEWP     W+     +WR
Sbjct:   12 VEEHVINEEYKIWKKNNPFLYDLVMTHALEWPSLTAQWLPDVTRIWR 58
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A2K6Q1F1_RHIRO (RB binding protein 4, chromatin remodeling factor n=20 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K6Q1F1_RHIRO)

HSP 1 Score: 68.9 bits (167), Expect = 5.320e-14
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCY-SLWR 147
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     S WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRSFWR 59
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A8C3YZT6_9TELE (Histone-binding protein RBBP4-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3YZT6_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 5.700e-14
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 147
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTTQWLPD--VIWR 56
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A4W4EAR2_ELEEL (Histone-binding protein RBBP7 n=9 Tax=Clupeocephala TaxID=186625 RepID=A0A4W4EAR2_ELEEL)

HSP 1 Score: 68.2 bits (165), Expect = 5.840e-14
Identity = 30/47 (63.83%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    7 AEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWR 147
             EER I EEYK+WKKNTPFLYD+VMTHALEWP     W+     +WR
Sbjct:   11 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPD--VIWR 55
[Close]
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Match: A0A6H5JAT4_9PHAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.140e-14
Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 EQAEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYS 138
            E+AEE+ ITEEYKVWKKNTPFLYDVVMTHALEWP     W+    S
Sbjct:   80 EEAEEKMITEEYKVWKKNTPFLYDVVMTHALEWPSLTVQWLPSVKS 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7028.14978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8C9X5X3_SANLU3.200e-1657.14Retinoblastoma binding protein 4, like n=1 Tax=San... [more]
A0A669B092_ORENI1.700e-1563.83CAF1C_H4-bd domain-containing protein n=8 Tax=Eute... [more]
A0A669BZA1_ORENI2.740e-1563.83CAF1C_H4-bd domain-containing protein n=17 Tax=Eut... [more]
A0A7N5ZR26_ANATE2.690e-1464.58CAF1C_H4-bd domain-containing protein n=1 Tax=Anab... [more]
A0A4W5Q2S7_9TELE2.850e-1464.58Retinoblastoma binding protein 4 n=3 Tax=Protacant... [more]
A0A8C2QHW4_CRIGR4.430e-1459.57CAF1C_H4-bd domain-containing protein n=1 Tax=Cric... [more]
A0A2K6Q1F1_RHIRO5.320e-1464.58RB binding protein 4, chromatin remodeling factor ... [more]
A0A8C3YZT6_9TELE5.700e-1463.83Histone-binding protein RBBP4-like n=1 Tax=Dentice... [more]
A0A4W4EAR2_ELEEL5.840e-1463.83Histone-binding protein RBBP7 n=9 Tax=Clupeocephal... [more]
A0A6H5JAT4_9PHAE7.140e-1471.74CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7028contigH-paniculata_contig7028:8696..8866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.9
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog51511.ENSCSAVP00000010999
Preferred nameRBBP4
KEGG koko:K10752,ko:K11659
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000118,GO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001558,GO:0001708,GO:0002244,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007548,GO:0008150,GO:0008152,GO:0008283,GO:0008285,GO:0008406,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010286,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0014070,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0016580,GO:0016581,GO:0016589,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0019213,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030308,GO:0031010,GO:0031055,GO:0031099,GO:0031101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033186,GO:0033554,GO:0033558,GO:0033993,GO:0034080,GO:0034508,GO:0034605,GO:0034622,GO:0034708,GO:0034723,GO:0034724,GO:0034728,GO:0035097,GO:0035098,GO:0035239,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042127,GO:0042221,GO:0042246,GO:0042393,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043565,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046661,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0061458,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0070822,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0098732,GO:0140096,GO:1901363,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.cellular heat acclimation
EggNOG OGs38E9H@33154,3BC0N@33208,3CUFN@33213,47ZEP@7711,KOG0264@1,KOG0264@2759
COG Functional cat.B
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.2558296-CDS-H-paniculata_contig7028:8695..88661622930847.2558296-CDS-H-paniculata_contig7028:8695..8866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7028 8696..8866 +
1691481479.261289-CDS-H-paniculata_contig7028:8695..88661691481479.261289-CDS-H-paniculata_contig7028:8695..8866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7028 8696..8866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7028.14978.1prot_H-paniculata_contig7028.14978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7028 8696..8866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7028.14978.1

>prot_H-paniculata_contig7028.14978.1 ID=prot_H-paniculata_contig7028.14978.1|Name=mRNA_H-paniculata_contig7028.14978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
EQAEERNITEEYKVWKKNTPFLYDVVMTHALEWPRCVCFWVSGCYSLWRH
STVLVF*
back to top

mRNA from alignment at H-paniculata_contig7028:8696..8866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7028.14978.1 ID=mRNA_H-paniculata_contig7028.14978.1|Name=mRNA_H-paniculata_contig7028.14978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig7028:8696..8866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGCTGAGGAGAGGAACATCACGGAGGAGTATAAAGTGTGGAAGAA
GAACACGCCGTTCTTGTACGACGTCGTTATGACTCATGCCTTGGAATGGC
CGAGGTGCGTGTGTTTCTGGGTGTCGGGGTGTTACAGTTTGTGGAGGCAC
TCTACAGTGTTGGTTTTTTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7028:8696..8866+

>mRNA_H-paniculata_contig7028.14978.1 ID=mRNA_H-paniculata_contig7028.14978.1|Name=mRNA_H-paniculata_contig7028.14978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig7028:8696..8866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGCTGAGGAGAGGAACATCACGGAGGAGTATAAAGTGTGGAAGAA
GAACACGCCGTTCTTGTACGACGTCGTTATGACTCATGCCTTGGAATGGC
CGAGGTGCGTGTGTTTCTGGGTGTCGGGGTGTTACAGTTTGTGGAGGCAC
TCTACAGTGTTGGTTTTTTAAGAGCAGGCTGAGGAGAGGAACATCACGGA
GGAGTATAAAGTGTGGAAGAAGAACACGCCGTTCTTGTACGACGTCGTTA
TGACTCATGCCTTGGAATGGCCGAGGTGCGTGTGTTTCTGGGTGTCGGGG
TGTTACAGTTTGTGGAGGCACTCTACAGTGTTGGTTTTTTAA
back to top