prot_H-paniculata_contig7027.14976.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7027.14976.1
Unique Nameprot_H-paniculata_contig7027.14976.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length305
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7027.14976.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 151..166
e-value: 0.023
score: 15.2
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 152..168
e-value: 8.9E-4
score: 17.0
NoneNo IPR availablePANTHERPTHR19862FAMILY NOT NAMEDcoord: 17..291
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 4..221
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 212..304

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7027contigH-paniculata_contig7027:4799..10476 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7027.14976.1mRNA_H-paniculata_contig7027.14976.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7027 4799..10476 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7027.14976.1 ID=prot_H-paniculata_contig7027.14976.1|Name=mRNA_H-paniculata_contig7027.14976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp
MIVTNGTTLKIVSSNSSDVAIDGDGTQQLFDVHDATLSISNVNLENGNGT
NGGAIYGHYADVRCSDCRFFGNRASEEGGAITLKESNVSFTGETYCLRNS
AGSDGGFLSATGSSSVVFEGNSTFEDNISDGRGGVIFAYYVEQVTFKGPS
RFYKNTAYDSGGAIYVQGTPLSFPREDSTVEFVNNNVTTLFGGALAVAGK
EPLTMNVSALFKNNSASTGGAAYVTGRAANSIISRARFVSNSASLDGGAL
VMNRNGGSIGTDTPESVVVINCTFEDNHASRGGGAMVVASGNVEINDTIF
RNNIA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence