mRNA_H-paniculata_contig7027.14976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7027.14976.1
Unique NamemRNA_H-paniculata_contig7027.14976.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7027.14976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7027contigH-paniculata_contig7027:4799..10476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog2880.D7FHH1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size915
Cds size915
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930847.0735798-CDS-H-paniculata_contig7027:4798..48501622930847.0735798-CDS-H-paniculata_contig7027:4798..4850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7027 4799..4850 +
1691481479.194411-CDS-H-paniculata_contig7027:4798..48501691481479.194411-CDS-H-paniculata_contig7027:4798..4850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7027 4799..4850 +
1622930847.0931737-CDS-H-paniculata_contig7027:9613..104761622930847.0931737-CDS-H-paniculata_contig7027:9613..10476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7027 9614..10476 +
1691481479.209994-CDS-H-paniculata_contig7027:9613..104761691481479.209994-CDS-H-paniculata_contig7027:9613..10476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7027 9614..10476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7027.14976.1prot_H-paniculata_contig7027.14976.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7027 4799..10476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7027.14976.1

>prot_H-paniculata_contig7027.14976.1 ID=prot_H-paniculata_contig7027.14976.1|Name=mRNA_H-paniculata_contig7027.14976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=305bp
MIVTNGTTLKIVSSNSSDVAIDGDGTQQLFDVHDATLSISNVNLENGNGT
NGGAIYGHYADVRCSDCRFFGNRASEEGGAITLKESNVSFTGETYCLRNS
AGSDGGFLSATGSSSVVFEGNSTFEDNISDGRGGVIFAYYVEQVTFKGPS
RFYKNTAYDSGGAIYVQGTPLSFPREDSTVEFVNNNVTTLFGGALAVAGK
EPLTMNVSALFKNNSASTGGAAYVTGRAANSIISRARFVSNSASLDGGAL
VMNRNGGSIGTDTPESVVVINCTFEDNHASRGGGAMVVASGNVEINDTIF
RNNIA
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mRNA from alignment at H-paniculata_contig7027:4799..10476+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7027.14976.1 ID=mRNA_H-paniculata_contig7027.14976.1|Name=mRNA_H-paniculata_contig7027.14976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5678bp|location=Sequence derived from alignment at H-paniculata_contig7027:4799..10476+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGTAACCAACGGCACCACCCTCAAGATCGTCTCTTCTAATAGCTC
AGGTACCACTTGCATTCCCTACTCTGCCTAGTTTCAGATGTACCATTCAA
CTCCGTCACTGGATGTGGTAATCAATAAAGGATGTCACGGTTAGCGTTCA
TCTACTCCTCGCATGCACAGTAGGACAATCGCTGCATATAGTACAGCACA
GACAGCACCGTGTTCTTCAGCTTGTTCACGCATAGCAAACTTACTACCAA
AAGTTGTTGTACAGCAGGTACGCATTTCACGACAATGTGTGTCGAGGTGT
TGGCCTCCATGTGCCGATATGTTTCTGAGCCTTTTTCACCCCTAGAAAAT
ACTGCTGCGGGTTTTCAACCAGTACAAACTCGCTTGAAACTACATATACG
ACTTGGCAATTTTGGTGATTTTCGGCTATTTGTGCTGGAGAGAGGGTCGT
TGATTGGTTCATGCTTGGTGTCGCCTCGACGCAAGCAGAACCAATGCTGG
AACTACCGTTACCCCTAAATCTAACCCTCATCGCCCATGCATCGTGTGCG
TTGCCAGGGTTCATCTCGACGCCGTTGGCACCATGTCACCCCCCGGACAA
ACACGATCTTAATATATGTAATTATTTTTCTTGGGCAAACACATATGTAT
TATTTTGCGAGTGTATGAATGGTCACTCTAAAGATGGTCACCGGCGAACA
GTCGCACGTTCAGATCTTGTTTATTTTCAAGTGGTACTGTACAGGCTGAA
TATTTGCGGGAGCTTTTCGATGCGCCATCCTGTATCAAGTATCCTGCATA
TTATTCGGGTGACATGGACACCTTTCCCAACTCAAACAGATTAGAGTACT
CATTCCAGATTTCTCGTATTTATTCGTGTCTTGTATACGTGTTTGCCTGG
GGTTCACCATTTTAAGTCAAATCATGTTTTGGGAAATGTTTTCGAGCGTG
TAGTCCGCTTGGGGTCTCTAGTTCCAGCTAGGTCTCCCCGTGGTCTTGGA
TGCTGAGTTTGTTTCAACCATGTTTCAACCTATTCCATGGGGGCGGGTGT
CGTCGTTTACTTACAAAAATAACGTGCTGGTTGAAGGCTAACTTGCAATT
CGGATAATCTTGTTTATCAGACCTTGAGTGAATGGTGTTACTTTGATTTC
TTTAGATAGTATCCAGGTTTAATACGTGATTCTTGGGGCTGTCAACGTGT
GGCATATGTTGTTCGCATCAGAACGGATATACTCAACGCCAGAATGAGCT
ATCACTTTTAGTTCCAATCCCACTGTAACCACCTGCAAGACGGCCGGTTC
AGACAAGGCATGTCGAACATTCGTCAGAGTCCTGTGTCGTGGGAACACGA
TGCCTTGTTCAGTTTTTAGCTGGACACAATCCAGTGAAATCTAGAAAAAA
ACCTCGTTCTTTTGTGCGGGGCCCTATAGGGCAGGCGTGAGAGTGAAACT
ACTTGGATGTAGAAGAAGCAGAATCACACCACTTCGATAATGGTTCAAAT
GTCTCTGAAGCCTTCAGGCTGGTGTTTTTGTCTTCCGCTTTCGTGAAAAG
GGTCGATACGGAATGTTGTGGGCCGTATTGTCTAGCGTCGGGTGGTGTTT
CGGACTAAAAAAGAGGCTCATGTAGGTGAAGACTTCCCTGCGACCGTCTG
TCGAGCATCCTTGTAAGCTGTCTATTAATTGTTTTCATGATAACTTACTT
TTTTGCGAGACACTGTGCCGGTCAAAGTCGCGAGCGCCCACACCAACTCA
AACCCTGGCCCTGACCCTGACCCCTACAAATATATCTCTTCTGGTGTCAA
ATCTGACTTGGGTCGATCTAAAATCGCCCAAGCGCTGCATCGCTTCATGT
CGTCGCCAAAGCCCTGGAGTTTGGTTCGTGAACGGTTTGGGCAGTACGCA
ACAGAGATAGTACCGTGAAGCAAGCACTGCAAAACCCATGAGCAGTATAA
GTCTGTTTTGTTAAAAGAAATTTAGACATACTTTGGTAAAATACGCATGA
AATATCGGATAAAATGTTTTGCTTCAGCCTTGCGTGGGTGTAAAAAAAAA
GATGAGCAGTTTTGACATATGAGGCGAACACTACTGTCTCTGAGAGTCCC
TCCGCGGAAGACGGTGGGGGTCGGTGGAAGGGCAAAGCTCGGAGTAATTG
CTGGAGTAGTACGTCGTGAGCGTGGTTCATTTTGTTTGCCATCATCCAGC
CGTCCATAAGAAGGGAAGAGGCAAAGGAGAGTGTTAACGAGGATGGTTTT
GCACAGAGAACCAAAACTCATGACGCATAAAAAGGTATCGTAGTGTGGTG
AAAAAGCGGGGGTATGGACGAGTTTCGACGGAAATTGTATGGATCCTCTA
GCGCGTGTTGAATGAATACGAAAATTAACCCGATACGATATTCTGATATC
CTATCCGATGTATCGCGATGTATCGGATATTCATATCACATCGGATATCA
GTTGATATGTAATATGAAATGATCGGCGCGCCGTCATCCTCTAGTATCTA
TCTTTATGCATGAACAGGTCTTTGAAATATCAGATGTTTGTATCCTGCCG
TAGACTGTACTGACTCAGTTACTGGGAAGAGTGTCAAACAGCATATTGGT
GAAATGGGGACCCTGGGTAATATTGGAAATAGGCTGTATCCTGAAGATCC
GAAATTGATTTTCAGGAAACAGCCTATTTCCAATATTACCCAGGGTCCCC
ATCTCAAAGTTGGGTCCCCATTTCACCAATATGCTGTTATCATTGGTCAG
TGCTATATGATTTGTCGCAAGCCCCAGCAGTTTTCTTACAGCTTCCAAAA
GGGAGACTGCACATTGTCGATTGCGAGCGATGTATTGATATAAAGAAAAA
TAGGAATTTATATCTACAACGACTTTCGTCCAACGGAGAACACGACCTCG
AAAAGAGAACAAGCGAACATATTGACTTTGCCTCGATTTTGACCTACAAC
GCAGGCATTTCAGTGAAAGCACCTTGAAGAGAATTTGGAGCCATTGGTCG
TGCAAAAACATGCTGCTTGAAATTCGGGATCCGACAAGGTCCGACCAAGT
TCGGAAAATCGGACAATTTTTCATGTCGAGCCCGATGAAACGAATTGGCG
ATATCGAATAATTGACTGATTTTCCTCACTCGACTGGGCTTTGTCGGAAT
CGGAAATCGAACATGGCAATTCTTTCGCATGATCCATGGCTTCAAGTTCT
CTTCAAGATTCTTCGACTGAAGTGCTTGCCTTGCAAGTCAACATCAACAA
AACTCAAAACGATCGCTCGTTCTCTTGTATATTAAGCATATCAACTGATA
TAATATACGGATATGCATCACCAATACCGTCATACGGAGTGAGTGAATGA
TTGATAGCCGAGTCGTCCTACGGCAGAGGGGCGTCAACGGTTTAACGAAG
GTATCTTTGCAAAAGCGGTGCAAAAAGACGCGAAAGAAATGTTATGAAAT
TGCATGTGTTTGTGTAATCGCTAAACGTGCACATTCCACGAGTTCACATG
GGATTTTTCTTGAAGGAGGGGCAATAAAACCAAAAAAGAAAAGCCCGACC
CTCTTCTTAAAGTGACTCCTTTGTTAAACAAAGCGATTCAAATACCCCCG
CCCCCCTATCGTAGAATGACTCTGCGCCTTCAGCGATCGTTGTGTAATAG
GAGGATCCCGAATGATTGCGGAAGGTTCTGAATACTTTTATGGCAACGTA
GAAAATTGGGTTGATGAAGATTCATTTATTATATAGGGACCGCCCAAAGT
CGCTAATAGTTCACTCGATGTTGCGTAAATCCATGTTTTAACTGAAACTC
TTCCTCTACTGCAATGGTGTGTAGGTGATTCATGATGCTGGGCACTTTTC
TCAAGCATGATCATGCAAGAGGCCGAGGCTACTGTCCAGACCAACAAACA
GTGTGCCACTTGGTCCGTCCCCACCATTGGTAGAAAGCTTTACACGCATA
GCTGGTAAATGTTATGGCTGCTGGAGTAAGACCACAAATTGGTGGCGAAC
TAGAGGGACTCTCCGAACAAAACACTGCCGTGCATTAGCCACCCTCATCG
AGCTTCAATCACCCTTACCCGAGGTTGCTCGTGAAATTATTACGTTGTTG
ATTCAAAATTATACAATACTATTGACACCAGCATTATCATTCGATTTATG
TATGGTACACCGAAATTGCCACTTGGTCTTTAAAGTGATCTATCAGGCAT
TAAATGAAACTGATGTTCGCGTGCGAAGCTCCTCACCGACATTTAGCTTT
CGTGATACAGTATAGTTGCGTTGACTGAGAAATTGTTGCCAAAAGGATTG
CGCTATAGGGCTTTTGAGATCAAAATATATTTGGTAGGAGGAATGGTGGG
TAGGGTATCGTGTGTTATACCTGGCGGCGAGGTACATAAACATCGGCTCC
GCTCCCCAACCTTTCAGGGCGATATAGCTGGTGCTTAGATGATCAAGAGC
TACGGCTCGAGCTACCACGTGTTTCTATACCGGGGGGCAGTGATTCGTTT
ATGCTTATGACGCGCACTGTACCCCTTTGTCACCGTCTGCAACGCATCAC
TTCTGTTTCAGTTCAACGCAGTGTACTATTCACTACTACCGGCTGCCTTC
TTCGCGCCCTGCTGATCCCACCGCCACGGCAGGCCAAGTGGACAAACTTT
CATTAGTGGCGACTTTGAAGATGAAGACCGGTTGTGTGGGTACAAGTTTT
GTCATGGTCCGAATAGAGTGGAACCAGCTTGTTTGATTTTACGTGTACAT
TTCCAGGTGATGTATACTCTTATAATCTCCTTCCATTCTTGCACCCATTT
TTTGCTTTTTGGCAGATGTCGCGATCGATGGAGATGGCACTCAGCAGTTA
TTCGATGTACATGACGCCACGCTCAGTATATCAAACGTCAACTTGGAAAA
CGGGAACGGTACAAATGGTGGGGCCATATACGGGCACTACGCTGATGTGA
GATGTTCCGACTGCAGATTTTTTGGTAATCGAGCCAGCGAAGAGGGTGGC
GCAATAACGCTGAAGGAGTCCAACGTTTCATTTACGGGAGAAACATACTG
TCTCAGGAACAGTGCTGGCAGCGACGGAGGGTTCCTTTCGGCGACGGGAA
GCTCCTCAGTTGTCTTCGAAGGAAACTCAACTTTCGAGGACAACATCTCG
GACGGGCGAGGGGGGGTAATATTTGCCTATTACGTCGAACAAGTTACGTT
TAAAGGACCCAGCAGATTCTACAAGAATACGGCATATGACTCAGGCGGCG
CCATATATGTGCAAGGCACTCCCTTGAGCTTCCCCAGGGAGGACAGTACG
GTTGAGTTTGTCAATAATAACGTGACTACGCTATTCGGCGGTGCCCTCGC
TGTGGCCGGAAAAGAGCCGTTAACGATGAACGTAAGTGCCTTGTTCAAAA
ACAACTCGGCGTCGACGGGTGGGGCCGCATACGTGACCGGGCGAGCAGCT
AATAGCATAATCAGCCGGGCACGCTTCGTATCTAACTCGGCAAGCCTGGA
TGGTGGAGCCTTAGTGATGAATCGTAATGGTGGTAGTATTGGTACTGACA
CGCCGGAGTCCGTTGTGGTGATCAATTGCACTTTTGAGGACAACCATGCA
TCGAGGGGCGGAGGTGCGATGGTCGTGGCTTCGGGGAATGTGGAAATTAA
TGACACCATTTTCAGGAACAACATAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig7027:4799..10476+

>mRNA_H-paniculata_contig7027.14976.1 ID=mRNA_H-paniculata_contig7027.14976.1|Name=mRNA_H-paniculata_contig7027.14976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at H-paniculata_contig7027:4799..10476+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGTAACCAACGGCACCACCCTCAAGATCGTCTCTTCTAATAGCTC
AGATGATTGTAACCAACGGCACCACCCTCAAGATCGTCTCTTCTAATAGC
TCAGATGTCGCGATCGATGGAGATGGCACTCAGCAGTTATTCGATGTACA
TGACGCCACGCTCAGTATATCAAACGTCAACTTGGAAAACGGGAACGGTA
CAAATGGTGGGGCCATATACGGGCACTACGCTGATGTGAGATGTTCCGAC
TGCAGATTTTTTGGTAATCGAGCCAGCGAAGAGGGTGGCGCAATAACGCT
GAAGGAGTCCAACGTTTCATTTACGGGAGAAACATACTGTCTCAGGAACA
GTGCTGGCAGCGACGGAGGGTTCCTTTCGGCGACGGGAAGCTCCTCAGTT
GTCTTCGAAGGAAACTCAACTTTCGAGGACAACATCTCGGACGGGCGAGG
GGGGGTAATATTTGCCTATTACGTCGAACAAGTTACGTTTAAAGGACCCA
GCAGATTCTACAAGAATACGGCATATGACTCAGGCGGCGCCATATATGTG
CAAGGCACTCCCTTGAGCTTCCCCAGGGAGGACAGTACGGTTGAGTTTGT
CAATAATAACGTGACTACGCTATTCGGCGGTGCCCTCGCTGTGGCCGGAA
AAGAGCCGTTAACGATGAACGTAAGTGCCTTGTTCAAAAACAACTCGGCG
TCGACGGGTGGGGCCGCATACGTGACCGGGCGAGCAGCTAATAGCATAAT
CAGCCGGGCACGCTTCGTATCTAACTCGGCAAGCCTGGATGGTGGAGCCT
TAGTGATGAATCGTAATGGTGGTAGTATTGGTACTGACACGCCGGAGTCC
GTTGTGGTGATCAATTGCACTTTTGAGGACAACCATGCATCGAGGGGCGG
AGGTGCGATGGTCGTGGCTTCGGGGAATGTGGAAATTAATGACACCATTT
TCAGGAACAACATAGCAATGTCGCGATCGATGGAGATGGCACTCAGCAGT
TATTCGATGTACATGACGCCACGCTCAGTATATCAAACGTCAACTTGGAA
AACGGGAACGGTACAAATGGTGGGGCCATATACGGGCACTACGCTGATGT
GAGATGTTCCGACTGCAGATTTTTTGGTAATCGAGCCAGCGAAGAGGGTG
GCGCAATAACGCTGAAGGAGTCCAACGTTTCATTTACGGGAGAAACATAC
TGTCTCAGGAACAGTGCTGGCAGCGACGGAGGGTTCCTTTCGGCGACGGG
AAGCTCCTCAGTTGTCTTCGAAGGAAACTCAACTTTCGAGGACAACATCT
CGGACGGGCGAGGGGGGGTAATATTTGCCTATTACGTCGAACAAGTTACG
TTTAAAGGACCCAGCAGATTCTACAAGAATACGGCATATGACTCAGGCGG
CGCCATATATGTGCAAGGCACTCCCTTGAGCTTCCCCAGGGAGGACAGTA
CGGTTGAGTTTGTCAATAATAACGTGACTACGCTATTCGGCGGTGCCCTC
GCTGTGGCCGGAAAAGAGCCGTTAACGATGAACGTAAGTGCCTTGTTCAA
AAACAACTCGGCGTCGACGGGTGGGGCCGCATACGTGACCGGGCGAGCAG
CTAATAGCATAATCAGCCGGGCACGCTTCGTATCTAACTCGGCAAGCCTG
GATGGTGGAGCCTTAGTGATGAATCGTAATGGTGGTAGTATTGGTACTGA
CACGCCGGAGTCCGTTGTGGTGATCAATTGCACTTTTGAGGACAACCATG
CATCGAGGGGCGGAGGTGCGATGGTCGTGGCTTCGGGGAATGTGGAAATT
AATGACACCATTTTCAGGAACAACATAGCA
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